Wall clock time and date at job start Tue Mar 31 2020 12:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99855 * 2 1 4 4 O 1.20829 * 120.00060 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00258 * 179.97438 * 3 2 1 6 6 C 1.53004 * 110.63959 * 59.30180 * 5 3 2 7 7 C 1.55151 * 110.72360 * 182.44341 * 5 3 2 8 8 C 1.55117 * 101.48978 * 153.73859 * 7 5 3 9 9 N 1.47428 * 104.93822 * 323.22292 * 8 7 5 10 10 C 1.34781 * 125.64534 * 203.96574 * 9 8 7 11 11 O 1.21612 * 119.99589 * 174.79217 * 10 9 8 12 12 C 1.47432 * 120.00289 * 354.79113 * 10 9 8 13 13 C 1.39226 * 120.28182 * 321.60384 * 12 10 9 14 14 C 1.38218 * 120.09056 * 179.71976 * 13 12 10 15 15 C 1.38822 * 120.67625 * 0.55539 * 14 13 12 16 16 C 1.37595 * 120.57164 * 359.72521 * 15 14 13 17 17 C 1.40706 * 119.88250 * 359.97438 * 16 15 14 18 18 C 1.40888 * 120.33249 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00338 * 150.42636 * 18 17 16 20 20 C 1.40269 * 119.99900 * 330.42905 * 18 17 16 21 21 N 1.30634 * 120.00230 * 349.71467 * 20 18 17 22 22 Si 1.86801 * 120.00501 * 169.71371 * 20 18 17 23 23 H 1.48506 * 109.46701 * 59.99696 * 22 20 18 24 24 H 1.48494 * 109.47520 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46954 * 300.00161 * 22 20 18 26 26 C 1.47015 * 108.70385 * 24.00413 * 9 8 7 27 27 H 1.09001 * 109.47357 * 299.99489 * 1 2 3 28 28 H 1.09002 * 109.47413 * 60.00217 * 1 2 3 29 29 H 1.08998 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47158 * 60.69861 * 6 5 3 31 31 H 1.08994 * 109.47368 * 180.70225 * 6 5 3 32 32 H 1.09003 * 109.46948 * 300.70430 * 6 5 3 33 33 H 1.09006 * 111.00733 * 271.94611 * 7 5 3 34 34 H 1.09000 * 111.00191 * 35.79415 * 7 5 3 35 35 H 1.08998 * 110.42309 * 204.29775 * 8 7 5 36 36 H 1.09000 * 110.20924 * 82.03950 * 8 7 5 37 37 H 1.08004 * 119.95370 * 359.97438 * 13 12 10 38 38 H 1.08001 * 119.66182 * 180.30275 * 14 13 12 39 39 H 1.08000 * 119.71599 * 179.73743 * 15 14 13 40 40 H 1.08006 * 120.06179 * 180.02562 * 16 15 14 41 41 H 0.96999 * 120.00240 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.88129 * 239.51993 * 26 9 8 43 43 H 1.09001 * 110.01333 * 118.43025 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.1436 0.5731 -1.2302 7 6 4.0385 2.7516 0.0623 8 6 5.4323 2.6027 0.7267 9 7 5.2697 1.5182 1.7120 10 6 6.0278 1.3357 2.8114 11 8 5.7445 0.4606 3.6069 12 6 7.2005 2.1969 3.0495 13 6 8.0095 2.5910 1.9871 14 6 9.1046 3.4032 2.2141 15 6 9.4188 3.8259 3.4986 16 6 8.6416 3.4482 4.5694 17 6 7.5176 2.6269 4.3647 18 6 6.7149 2.2349 5.4542 19 1 5.6625 2.0417 5.3077 20 6 7.2827 2.0956 6.7292 21 7 8.5805 2.1307 6.8738 22 14 6.1831 1.8598 8.2208 23 1 5.3761 0.6249 8.0505 24 1 7.0219 1.7382 9.4400 25 1 5.2769 3.0284 8.3573 26 6 4.1444 0.6684 1.2964 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.7753 1.0607 -2.1328 31 1 5.2318 0.6306 -1.2043 32 1 3.8350 -0.4724 -1.2304 33 1 4.1227 3.1771 -0.9377 34 1 3.3723 3.3491 0.6846 35 1 5.7167 3.5291 1.2256 36 1 6.1778 2.3284 -0.0197 37 1 7.7785 2.2651 0.9837 38 1 9.7245 3.7088 1.3843 39 1 10.2806 4.4568 3.6587 40 1 8.8934 3.7821 5.5651 41 1 8.9732 2.0348 7.7555 42 1 3.3806 0.6583 2.0740 43 1 4.4936 -0.3467 1.1069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601319140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:02 Heat of formation + Delta-G solvation = -96.868334 kcal Electronic energy + Delta-G solvation = -26889.900641 eV Core-core repulsion = 23092.947300 eV Total energy + Delta-G solvation = -3796.953341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.03609 -39.40872 -37.70329 -36.66316 -36.26535 -33.80164 -32.77599 -30.05337 -29.62641 -29.46441 -27.88671 -26.79519 -25.44228 -24.05986 -22.63709 -21.50501 -20.92564 -19.75730 -18.82841 -17.43213 -17.29929 -16.96595 -16.61347 -15.95446 -15.47234 -15.38391 -14.79518 -14.37088 -14.00494 -13.95031 -13.74361 -13.41817 -13.09058 -12.84585 -12.65658 -12.54299 -12.44002 -12.20287 -12.07245 -11.93080 -11.61003 -11.56087 -11.15972 -11.12891 -10.99870 -10.95977 -10.90096 -10.76982 -10.51868 -10.44789 -9.96281 -9.66549 -9.27082 -8.70376 -8.11090 -7.56426 -7.43447 -6.80836 -4.42635 2.01241 2.41740 2.50242 2.82430 3.07136 3.12439 3.23781 3.57422 3.94021 3.96531 4.14641 4.43225 4.60208 4.63135 4.80208 4.90204 4.97951 5.11541 5.29557 5.32160 5.41436 5.57909 5.60586 5.71748 5.74788 5.82177 5.86825 5.98345 6.03782 6.08546 6.18810 6.22054 6.32875 6.50450 6.86783 6.97992 7.10990 7.21386 7.45357 7.56140 7.66442 7.88238 7.96819 8.13171 8.24321 8.56598 8.77966 8.85012 9.22275 10.12144 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.004064 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.025312 B = 6888.127958 C = 8272.491485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.479 3.521 4 O -0.502 6.502 5 C -0.069 4.069 6 C -0.135 4.135 7 C -0.114 4.114 8 C 0.108 3.892 9 N -0.629 5.629 10 C 0.593 3.407 11 O -0.532 6.532 12 C -0.257 4.257 13 C -0.058 4.058 14 C -0.248 4.248 15 C -0.093 4.093 16 C -0.155 4.155 17 C 0.147 3.853 18 C -0.422 4.422 19 H 0.084 0.916 20 C 0.075 3.925 21 N -0.789 5.789 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.263 1.263 26 C 0.130 3.870 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.283 0.717 42 H 0.065 0.935 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.115 -1.123 -13.147 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.270 6.270 3 C 0.322 3.678 4 O -0.389 6.389 5 C -0.071 4.071 6 C -0.192 4.192 7 C -0.152 4.152 8 C -0.015 4.015 9 N -0.367 5.367 10 C 0.388 3.612 11 O -0.408 6.408 12 C -0.262 4.262 13 C -0.077 4.077 14 C -0.268 4.268 15 C -0.112 4.112 16 C -0.174 4.174 17 C 0.143 3.857 18 C -0.450 4.450 19 H 0.102 0.898 20 C -0.144 4.144 21 N -0.413 5.413 22 Si 0.738 3.262 23 H -0.186 1.186 24 H -0.202 1.202 25 H -0.188 1.188 26 C 0.006 3.994 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.141 0.859 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.261 -1.370 -12.414 15.548 hybrid contribution -0.619 -0.129 0.581 0.859 sum -9.880 -1.499 -11.833 15.488 Atomic orbital electron populations 1.23285 0.76383 1.03748 1.02539 1.86532 1.23348 1.33279 1.83864 1.23411 0.91289 0.81356 0.71785 1.90661 1.66856 1.36379 1.44991 1.21616 0.86946 0.99690 0.98799 1.21827 1.02223 1.00684 0.94491 1.22954 0.97030 0.92653 1.02593 1.22375 0.95501 0.92279 0.91341 1.48545 1.32957 1.29415 1.25763 1.18286 0.81842 0.83494 0.77621 1.90718 1.71526 1.34584 1.43999 1.19323 1.00728 1.10735 0.95380 1.20713 0.95016 0.95972 0.95957 1.20269 1.01773 1.08708 0.96039 1.20807 0.98070 0.99037 0.93305 1.21396 0.97675 1.00248 0.98082 1.17396 0.90757 0.87389 0.90132 1.19685 0.97314 1.36503 0.91540 0.89828 1.26005 0.95265 0.92399 1.00761 1.69693 1.11362 1.34514 1.25781 0.86249 0.80545 0.80297 0.79068 1.18618 1.20203 1.18752 1.21627 0.90082 0.94903 0.92783 0.91800 0.91958 0.88026 0.91759 0.90336 0.90935 0.89185 0.89215 0.89356 0.91512 0.88797 0.89153 0.89140 0.85905 0.90545 0.91695 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.13 10.51 -39.26 -0.41 -4.54 16 3 C 0.48 6.27 6.48 36.00 0.23 6.50 16 4 O -0.50 -7.61 15.48 -18.75 -0.29 -7.90 16 5 C -0.07 -0.84 0.86 -153.83 -0.13 -0.97 16 6 C -0.14 -1.26 8.35 37.16 0.31 -0.95 16 7 C -0.11 -1.39 5.67 -24.47 -0.14 -1.53 16 8 C 0.11 1.55 4.94 -2.41 -0.01 1.54 16 9 N -0.63 -11.43 3.33 -171.65 -0.57 -12.01 16 10 C 0.59 13.89 7.02 -12.51 -0.09 13.80 16 11 O -0.53 -14.35 15.40 5.27 0.08 -14.27 16 12 C -0.26 -6.24 5.41 -104.37 -0.56 -6.80 16 13 C -0.06 -1.22 8.20 -39.22 -0.32 -1.54 16 14 C -0.25 -5.21 10.03 -39.37 -0.39 -5.60 16 15 C -0.09 -2.09 10.01 -39.60 -0.40 -2.48 16 16 C -0.15 -3.91 8.65 -38.88 -0.34 -4.25 16 17 C 0.15 3.93 5.56 -106.54 -0.59 3.33 16 18 C -0.42 -11.58 7.73 -37.82 -0.29 -11.88 16 19 H 0.08 2.36 6.74 -52.49 -0.35 2.00 16 20 C 0.07 1.92 5.26 -17.30 -0.09 1.82 16 21 N -0.79 -20.41 10.87 55.56 0.60 -19.81 16 22 Si 0.91 19.58 29.57 -169.99 -5.03 14.55 16 23 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 26 C 0.13 2.01 6.04 -3.07 -0.02 1.99 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.72 7.52 -51.93 -0.39 0.33 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.87 8.04 -51.93 -0.42 0.45 16 34 H 0.09 1.23 7.44 -51.93 -0.39 0.84 16 35 H 0.09 1.36 7.33 -51.93 -0.38 0.98 16 36 H 0.07 0.83 6.60 -51.93 -0.34 0.49 16 37 H 0.09 1.69 5.95 -52.48 -0.31 1.38 16 38 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.12 3.18 6.27 -52.48 -0.33 2.85 16 41 H 0.28 6.67 8.29 -40.82 -0.34 6.33 16 42 H 0.06 1.10 7.81 -51.93 -0.41 0.69 16 43 H 0.08 1.14 7.84 -51.93 -0.41 0.73 16 LS Contribution 353.91 15.07 5.33 5.33 Total: -1.00 -31.80 353.91 -7.87 -39.67 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.82 Total: 4.65 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -1.77 Total: -5.67 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.03 Total: -31.81 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.62 Total: -26.72 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.80 -7.87 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601319140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.198 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds