Wall clock time and date at job start Tue Mar 31 2020 12:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99855 * 2 1 4 4 O 1.20829 * 120.00060 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00258 * 179.97438 * 3 2 1 6 6 C 1.53004 * 110.63959 * 59.30180 * 5 3 2 7 7 C 1.55151 * 110.72360 * 182.44341 * 5 3 2 8 8 C 1.55117 * 101.48978 * 153.73859 * 7 5 3 9 9 N 1.47428 * 104.93822 * 323.22292 * 8 7 5 10 10 C 1.34781 * 125.64534 * 203.96574 * 9 8 7 11 11 O 1.21612 * 119.99589 * 174.79217 * 10 9 8 12 12 C 1.47432 * 120.00289 * 354.79113 * 10 9 8 13 13 C 1.39226 * 120.28182 * 321.60384 * 12 10 9 14 14 C 1.38218 * 120.09056 * 179.71976 * 13 12 10 15 15 C 1.38822 * 120.67625 * 0.55539 * 14 13 12 16 16 C 1.37595 * 120.57164 * 359.72521 * 15 14 13 17 17 C 1.40706 * 119.88250 * 359.97438 * 16 15 14 18 18 C 1.40888 * 120.33249 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00338 * 150.42636 * 18 17 16 20 20 C 1.40269 * 119.99900 * 330.42905 * 18 17 16 21 21 N 1.30634 * 120.00230 * 349.71467 * 20 18 17 22 22 Si 1.86801 * 120.00501 * 169.71371 * 20 18 17 23 23 H 1.48506 * 109.46701 * 59.99696 * 22 20 18 24 24 H 1.48494 * 109.47520 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46954 * 300.00161 * 22 20 18 26 26 C 1.47015 * 108.70385 * 24.00413 * 9 8 7 27 27 H 1.09001 * 109.47357 * 299.99489 * 1 2 3 28 28 H 1.09002 * 109.47413 * 60.00217 * 1 2 3 29 29 H 1.08998 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47158 * 60.69861 * 6 5 3 31 31 H 1.08994 * 109.47368 * 180.70225 * 6 5 3 32 32 H 1.09003 * 109.46948 * 300.70430 * 6 5 3 33 33 H 1.09006 * 111.00733 * 271.94611 * 7 5 3 34 34 H 1.09000 * 111.00191 * 35.79415 * 7 5 3 35 35 H 1.08998 * 110.42309 * 204.29775 * 8 7 5 36 36 H 1.09000 * 110.20924 * 82.03950 * 8 7 5 37 37 H 1.08004 * 119.95370 * 359.97438 * 13 12 10 38 38 H 1.08001 * 119.66182 * 180.30275 * 14 13 12 39 39 H 1.08000 * 119.71599 * 179.73743 * 15 14 13 40 40 H 1.08006 * 120.06179 * 180.02562 * 16 15 14 41 41 H 0.96999 * 120.00240 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.88129 * 239.51993 * 26 9 8 43 43 H 1.09001 * 110.01333 * 118.43025 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.1436 0.5731 -1.2302 7 6 4.0385 2.7516 0.0623 8 6 5.4323 2.6027 0.7267 9 7 5.2697 1.5182 1.7120 10 6 6.0278 1.3357 2.8114 11 8 5.7445 0.4606 3.6069 12 6 7.2005 2.1969 3.0495 13 6 8.0095 2.5910 1.9871 14 6 9.1046 3.4032 2.2141 15 6 9.4188 3.8259 3.4986 16 6 8.6416 3.4482 4.5694 17 6 7.5176 2.6269 4.3647 18 6 6.7149 2.2349 5.4542 19 1 5.6625 2.0417 5.3077 20 6 7.2827 2.0956 6.7292 21 7 8.5805 2.1307 6.8738 22 14 6.1831 1.8598 8.2208 23 1 5.3761 0.6249 8.0505 24 1 7.0219 1.7382 9.4400 25 1 5.2769 3.0284 8.3573 26 6 4.1444 0.6684 1.2964 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.7753 1.0607 -2.1328 31 1 5.2318 0.6306 -1.2043 32 1 3.8350 -0.4724 -1.2304 33 1 4.1227 3.1771 -0.9377 34 1 3.3723 3.3491 0.6846 35 1 5.7167 3.5291 1.2256 36 1 6.1778 2.3284 -0.0197 37 1 7.7785 2.2651 0.9837 38 1 9.7245 3.7088 1.3843 39 1 10.2806 4.4568 3.6587 40 1 8.8934 3.7821 5.5651 41 1 8.9732 2.0348 7.7555 42 1 3.3806 0.6583 2.0740 43 1 4.4936 -0.3467 1.1069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601319140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:01 Heat of formation + Delta-G solvation = -115.519658 kcal Electronic energy + Delta-G solvation = -26890.709423 eV Core-core repulsion = 23092.947300 eV Total energy + Delta-G solvation = -3797.762123 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.11144 -40.88442 -39.19295 -38.20862 -37.49882 -35.64868 -34.12397 -31.85612 -31.32521 -30.69071 -28.65060 -28.02730 -27.15809 -25.40784 -23.78541 -23.09453 -22.71580 -20.79683 -20.43161 -19.12686 -18.49535 -18.23638 -17.64534 -17.27867 -17.25653 -16.73024 -16.42069 -15.99553 -15.41177 -15.11545 -14.90845 -14.73400 -14.55048 -14.33632 -14.01802 -13.74334 -13.66920 -13.53538 -13.43481 -13.09160 -12.99871 -12.87744 -12.83350 -12.64470 -12.55299 -12.24225 -12.13592 -11.85838 -11.84789 -11.80953 -11.48450 -11.44821 -11.14977 -10.53150 -9.66403 -9.35267 -9.28295 -8.68558 -6.40085 0.60027 0.97723 1.03254 1.29981 1.41219 1.48925 1.57678 2.05368 2.16952 2.26239 2.72994 3.10294 3.36230 3.65795 3.71592 3.86841 4.06610 4.15569 4.20238 4.26291 4.29765 4.43254 4.55105 4.62471 4.66094 4.68664 4.71150 4.81382 4.86565 4.87307 4.95466 5.05123 5.09090 5.24079 5.25757 5.30759 5.34507 5.44877 5.61894 5.87390 6.02678 6.12729 6.30124 6.52324 6.58348 6.68458 6.86985 6.95231 7.46226 8.26572 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.004064 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.025312 B = 6888.127958 C = 8272.491485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.480 3.520 4 O -0.527 6.527 5 C -0.058 4.058 6 C -0.131 4.131 7 C -0.106 4.106 8 C 0.102 3.898 9 N -0.624 5.624 10 C 0.586 3.414 11 O -0.584 6.584 12 C -0.272 4.272 13 C -0.052 4.052 14 C -0.235 4.235 15 C -0.091 4.091 16 C -0.183 4.183 17 C 0.115 3.885 18 C -0.464 4.464 19 H 0.057 0.943 20 C 0.037 3.963 21 N -0.817 5.817 22 Si 0.975 3.025 23 H -0.275 1.275 24 H -0.255 1.255 25 H -0.257 1.257 26 C 0.126 3.874 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.291 0.709 42 H 0.040 0.960 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.758 -0.812 -16.368 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.323 3.677 4 O -0.416 6.416 5 C -0.060 4.060 6 C -0.188 4.188 7 C -0.143 4.143 8 C -0.019 4.019 9 N -0.359 5.359 10 C 0.380 3.620 11 O -0.465 6.465 12 C -0.277 4.277 13 C -0.070 4.070 14 C -0.254 4.254 15 C -0.109 4.109 16 C -0.203 4.203 17 C 0.112 3.888 18 C -0.493 4.493 19 H 0.075 0.925 20 C -0.179 4.179 21 N -0.443 5.443 22 Si 0.796 3.204 23 H -0.201 1.201 24 H -0.178 1.178 25 H -0.181 1.181 26 C 0.003 3.997 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.146 0.854 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.909 -1.034 -15.694 18.076 hybrid contribution -0.752 -0.217 1.354 1.563 sum -9.661 -1.251 -14.340 17.336 Atomic orbital electron populations 1.23590 0.74642 1.05847 1.02584 1.86520 1.25102 1.32475 1.83332 1.23543 0.91605 0.81393 0.71129 1.90653 1.67444 1.37201 1.46286 1.21598 0.86542 0.99693 0.98183 1.21868 1.02565 1.00875 0.93465 1.22938 0.94974 0.92513 1.03909 1.22674 0.97879 0.90487 0.90889 1.48411 1.32284 1.30399 1.24845 1.18287 0.82355 0.82866 0.78463 1.90674 1.72889 1.36733 1.46158 1.19660 1.01766 1.10611 0.95642 1.21089 0.94093 0.95085 0.96780 1.20792 1.01297 1.06720 0.96556 1.21184 0.98080 0.98458 0.93212 1.21345 0.98722 1.01653 0.98556 1.17758 0.91643 0.88169 0.91237 1.19651 0.96459 1.39724 0.93473 0.92486 1.26671 0.96587 0.91912 1.02711 1.69717 1.12263 1.35681 1.26683 0.85375 0.78944 0.79542 0.76573 1.20064 1.17805 1.18074 1.21749 0.88732 0.95262 0.93970 0.92625 0.91084 0.84984 0.89505 0.89504 0.90398 0.85423 0.91271 0.90567 0.88168 0.84924 0.84806 0.86258 0.87612 0.89832 0.94147 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.36 -7.86 10.51 -51.44 -0.54 -8.40 16 3 C 0.48 11.92 6.48 71.24 0.46 12.38 16 4 O -0.53 -15.50 15.48 21.96 0.34 -15.16 16 5 C -0.06 -1.31 0.86 -51.74 -0.04 -1.35 16 6 C -0.13 -1.94 8.35 71.98 0.60 -1.34 16 7 C -0.11 -2.30 5.67 32.06 0.18 -2.12 16 8 C 0.10 2.68 4.94 86.93 0.43 3.11 16 9 N -0.62 -22.53 3.33 -815.24 -2.71 -25.25 16 10 C 0.59 28.30 7.02 86.66 0.61 28.91 16 11 O -0.58 -33.38 15.40 -4.07 -0.06 -33.45 16 12 C -0.27 -13.39 5.41 -19.70 -0.11 -13.50 16 13 C -0.05 -2.07 8.20 22.50 0.18 -1.88 16 14 C -0.23 -8.97 10.03 22.40 0.22 -8.75 16 15 C -0.09 -3.91 10.01 22.26 0.22 -3.69 16 16 C -0.18 -9.50 8.65 22.72 0.20 -9.30 16 17 C 0.12 6.42 5.56 -21.11 -0.12 6.30 16 18 C -0.46 -27.21 7.73 23.41 0.18 -27.03 16 19 H 0.06 3.51 6.74 -2.91 -0.02 3.49 16 20 C 0.04 1.98 5.26 85.36 0.45 2.43 16 21 N -0.82 -44.19 10.87 21.88 0.24 -43.95 16 22 Si 0.97 42.16 29.57 68.60 2.03 44.19 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 C 0.13 3.88 6.04 86.73 0.52 4.40 16 27 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 28 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16 29 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.09 1.19 7.52 -2.39 -0.02 1.17 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.13 1.88 8.04 -2.38 -0.02 1.86 16 34 H 0.07 1.83 7.44 -2.39 -0.02 1.81 16 35 H 0.08 2.22 7.33 -2.39 -0.02 2.20 16 36 H 0.10 2.01 6.60 -2.39 -0.02 1.99 16 37 H 0.13 4.16 5.95 -2.91 -0.02 4.14 16 38 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 39 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.11 5.74 6.27 -2.91 -0.02 5.72 16 41 H 0.29 14.15 8.29 -92.71 -0.77 13.39 16 42 H 0.04 1.43 7.81 -2.39 -0.02 1.41 16 43 H 0.08 2.44 7.84 -2.39 -0.02 2.42 16 Total: -1.00 -75.08 353.91 5.51 -69.57 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 1.03 Total: 22.25 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 5.19 Total: -9.81 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -2.47 Total: -69.20 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -0.26 Total: -57.00 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -75.08 5.51 -69.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601319140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.951 kcal (2) G-P(sol) polarization free energy of solvation -75.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds