Wall clock time and date at job start Tue Mar 31 2020 12:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99847 * 2 1 4 4 O 1.20834 * 119.99799 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00342 * 179.97438 * 3 2 1 6 6 C 1.53002 * 110.29334 * 300.71075 * 5 3 2 7 7 C 1.54618 * 110.33003 * 178.56741 * 5 3 2 8 8 C 1.55108 * 102.76103 * 219.32143 * 7 5 3 9 9 N 1.48120 * 103.31431 * 37.26536 * 8 7 5 10 10 C 1.34779 * 127.03131 * 140.72233 * 9 8 7 11 11 O 1.21615 * 119.99822 * 174.92583 * 10 9 8 12 12 C 1.47426 * 120.00345 * 354.93353 * 10 9 8 13 13 C 1.39218 * 120.28249 * 42.84038 * 12 10 9 14 14 C 1.38234 * 120.09205 * 179.72145 * 13 12 10 15 15 C 1.38821 * 120.67171 * 0.56222 * 14 13 12 16 16 C 1.37597 * 120.57367 * 359.71606 * 15 14 13 17 17 C 1.40704 * 119.88047 * 0.02562 * 16 15 14 18 18 C 1.40888 * 120.32895 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00293 * 206.90584 * 18 17 16 20 20 C 1.40277 * 119.99884 * 26.90096 * 18 17 16 21 21 N 1.30634 * 119.99947 * 15.35889 * 20 18 17 22 22 Si 1.86800 * 119.99955 * 195.35413 * 20 18 17 23 23 H 1.48496 * 109.47066 * 60.00367 * 22 20 18 24 24 H 1.48502 * 109.47022 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47098 * 300.00273 * 22 20 18 26 26 C 1.47482 * 105.93249 * 320.76342 * 9 8 7 27 27 H 1.09000 * 109.47372 * 59.99626 * 1 2 3 28 28 H 1.08994 * 109.46651 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46847 * 299.99102 * 1 2 3 30 30 H 1.08999 * 109.47204 * 59.29310 * 6 5 3 31 31 H 1.08995 * 109.47434 * 179.29978 * 6 5 3 32 32 H 1.08998 * 109.46472 * 299.29300 * 6 5 3 33 33 H 1.08995 * 110.73953 * 337.60102 * 7 5 3 34 34 H 1.09001 * 110.73384 * 100.92758 * 7 5 3 35 35 H 1.08998 * 110.59293 * 278.82874 * 8 7 5 36 36 H 1.08996 * 110.82741 * 155.81831 * 8 7 5 37 37 H 1.07999 * 119.95684 * 0.02562 * 13 12 10 38 38 H 1.08000 * 119.65809 * 180.26039 * 14 13 12 39 39 H 1.08000 * 119.71335 * 179.74041 * 15 14 13 40 40 H 1.08000 * 120.06256 * 180.02562 * 16 15 14 41 41 H 0.97002 * 119.99572 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.91192 * 266.08224 * 26 9 8 43 43 H 1.09009 * 109.91150 * 144.80453 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.1341 0.5712 1.2348 7 6 4.0268 2.7506 -0.0358 8 6 5.2476 2.7050 -0.9914 9 7 4.8435 1.7126 -2.0140 10 6 5.0747 1.7737 -3.3404 11 8 4.7653 0.8397 -4.0552 12 6 5.7028 2.9726 -3.9248 13 6 6.7827 3.5797 -3.2896 14 6 7.3723 4.7004 -3.8441 15 6 6.8917 5.2404 -5.0292 16 6 5.8224 4.6660 -5.6771 17 6 5.2076 3.5215 -5.1366 18 6 4.1118 2.9260 -5.7919 19 1 3.3840 2.3642 -5.2253 20 6 3.9659 3.0629 -7.1803 21 7 4.9728 3.4709 -7.9058 22 14 2.3320 2.6616 -7.9919 23 1 1.2725 3.5385 -7.4317 24 1 2.4381 2.8861 -9.4560 25 1 1.9865 1.2407 -7.7332 26 6 4.1355 0.6444 -1.2840 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 3.8223 -0.4732 1.2331 31 1 5.2226 0.6255 1.2154 32 1 3.7620 1.0601 2.1351 33 1 3.2427 3.3897 -0.4418 34 1 4.3245 3.0865 0.9575 35 1 6.1380 2.3689 -0.4602 36 1 5.4189 3.6798 -1.4481 37 1 7.1634 3.1718 -2.3650 38 1 8.2123 5.1632 -3.3476 39 1 7.3615 6.1188 -5.4465 40 1 5.4555 5.0928 -6.5989 41 1 4.8720 3.5652 -8.8659 42 1 4.8314 -0.1547 -1.0285 43 1 3.3235 0.2517 -1.8961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601319141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:05 Heat of formation + Delta-G solvation = -96.054839 kcal Electronic energy + Delta-G solvation = -27104.528354 eV Core-core repulsion = 23307.610289 eV Total energy + Delta-G solvation = -3796.918065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98516 -39.31218 -37.66915 -36.61579 -36.22223 -33.83032 -32.83784 -30.06230 -29.63148 -29.43054 -27.83038 -26.62212 -25.41122 -24.15701 -22.60473 -21.54225 -20.94275 -19.65316 -18.81855 -17.33871 -17.26578 -16.97603 -16.53973 -15.93364 -15.45847 -15.42200 -14.82721 -14.37880 -13.99663 -13.92205 -13.62871 -13.32329 -13.07660 -12.81427 -12.71066 -12.46662 -12.37860 -12.17389 -11.98992 -11.92698 -11.64050 -11.54181 -11.17294 -11.14718 -11.01530 -10.88331 -10.87774 -10.68983 -10.50903 -10.37173 -9.96893 -9.67273 -9.24986 -8.71885 -8.17447 -7.55490 -7.47197 -6.85578 -4.42843 2.12274 2.45937 2.58003 2.81363 3.05301 3.10592 3.22486 3.53526 3.91278 3.93067 4.25157 4.49268 4.58441 4.64808 4.88265 4.98102 5.06622 5.17361 5.35792 5.37547 5.41619 5.55898 5.59752 5.71819 5.77632 5.81662 5.87078 5.98298 6.05616 6.07878 6.22343 6.31405 6.33269 6.51533 6.84258 6.96435 7.10313 7.20459 7.44478 7.65909 7.67113 7.87709 7.96825 8.13248 8.24911 8.54593 8.76569 8.84387 9.20824 10.08017 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.004749 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.106763 B = 5894.725899 C = 7436.671309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.476 3.524 4 O -0.500 6.500 5 C -0.069 4.069 6 C -0.134 4.134 7 C -0.121 4.121 8 C 0.101 3.899 9 N -0.631 5.631 10 C 0.599 3.401 11 O -0.534 6.534 12 C -0.257 4.257 13 C -0.058 4.058 14 C -0.251 4.251 15 C -0.092 4.092 16 C -0.158 4.158 17 C 0.147 3.853 18 C -0.425 4.425 19 H 0.083 0.917 20 C 0.077 3.923 21 N -0.781 5.781 22 Si 0.911 3.089 23 H -0.262 1.262 24 H -0.276 1.276 25 H -0.262 1.262 26 C 0.124 3.876 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.284 0.716 42 H 0.075 0.925 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 -3.366 15.166 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.318 3.682 4 O -0.387 6.387 5 C -0.070 4.070 6 C -0.192 4.192 7 C -0.159 4.159 8 C -0.022 4.022 9 N -0.368 5.368 10 C 0.393 3.607 11 O -0.410 6.410 12 C -0.262 4.262 13 C -0.077 4.077 14 C -0.270 4.270 15 C -0.111 4.111 16 C -0.177 4.177 17 C 0.143 3.857 18 C -0.453 4.453 19 H 0.101 0.899 20 C -0.143 4.143 21 N -0.406 5.406 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.201 1.201 25 H -0.186 1.186 26 C 0.000 4.000 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.707 -3.557 14.366 15.257 hybrid contribution -0.861 -0.154 -0.370 0.950 sum -4.569 -3.711 13.996 15.184 Atomic orbital electron populations 1.23279 0.76387 1.03676 1.02588 1.86504 1.23360 1.33323 1.84020 1.23496 0.91568 0.81346 0.71817 1.90659 1.66830 1.36352 1.44853 1.21499 0.87125 0.99693 0.98726 1.21863 1.01935 1.00750 0.94611 1.22941 0.99223 0.92830 1.00941 1.22648 0.95659 0.95127 0.88787 1.48912 1.58530 1.22950 1.06398 1.18268 0.76978 0.87357 0.78091 1.90713 1.52747 1.38685 1.58888 1.19282 1.03973 1.00017 1.02921 1.20672 0.95252 0.94810 0.96956 1.20249 1.04874 1.01716 1.00157 1.20783 0.96794 0.98363 0.95150 1.21332 0.98485 0.96695 1.01188 1.17352 0.90374 0.89491 0.88458 1.19670 1.07196 1.26331 0.92065 0.89918 1.26016 0.97940 0.92597 0.97774 1.69718 1.30521 1.32540 1.07774 0.86296 0.81935 0.80462 0.77789 1.18659 1.20095 1.18621 1.21793 0.97142 0.90899 0.90165 0.91745 0.88073 0.91994 0.90991 0.90473 0.91770 0.88794 0.89430 0.91398 0.88337 0.88866 0.89126 0.89142 0.86093 0.90452 0.90642 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.52 10.46 -39.25 -0.41 -4.93 16 3 C 0.48 6.79 6.37 36.00 0.23 7.02 16 4 O -0.50 -8.40 15.18 -18.76 -0.28 -8.68 16 5 C -0.07 -0.86 0.90 -154.29 -0.14 -1.00 16 6 C -0.13 -1.18 8.15 37.16 0.30 -0.88 16 7 C -0.12 -1.54 5.98 -24.77 -0.15 -1.69 16 8 C 0.10 1.46 5.49 -2.04 -0.01 1.44 16 9 N -0.63 -11.71 3.29 -170.91 -0.56 -12.27 16 10 C 0.60 14.27 6.91 -12.52 -0.09 14.19 16 11 O -0.53 -14.60 15.74 5.26 0.08 -14.52 16 12 C -0.26 -6.35 5.46 -104.37 -0.57 -6.92 16 13 C -0.06 -1.25 7.74 -39.22 -0.30 -1.55 16 14 C -0.25 -5.32 10.03 -39.37 -0.39 -5.71 16 15 C -0.09 -2.08 10.01 -39.60 -0.40 -2.48 16 16 C -0.16 -4.03 8.67 -38.88 -0.34 -4.36 16 17 C 0.15 3.97 5.57 -106.54 -0.59 3.38 16 18 C -0.42 -11.77 7.86 -37.81 -0.30 -12.07 16 19 H 0.08 2.37 6.77 -52.49 -0.36 2.01 16 20 C 0.08 1.98 5.18 -17.30 -0.09 1.89 16 21 N -0.78 -20.29 10.97 55.56 0.61 -19.68 16 22 Si 0.91 19.57 29.59 -169.99 -5.03 14.54 16 23 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 26 C 0.12 1.91 6.25 -2.98 -0.02 1.90 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 30 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 1.42 6.90 -51.93 -0.36 1.07 16 34 H 0.09 0.85 7.85 -51.93 -0.41 0.44 16 35 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 36 H 0.10 1.55 5.96 -51.93 -0.31 1.24 16 37 H 0.09 1.70 6.56 -52.49 -0.34 1.36 16 38 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.12 3.15 6.25 -52.49 -0.33 2.82 16 41 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 42 H 0.08 1.03 7.68 -51.93 -0.40 0.63 16 43 H 0.08 1.35 7.62 -51.92 -0.40 0.95 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -32.52 354.65 -7.87 -40.40 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.84 Total: 5.25 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.79 Total: -5.44 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.05 Total: -31.95 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.61 Total: -28.14 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.52 -7.87 -40.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601319141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.658 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds