Wall clock time and date at job start Tue Mar 31 2020 12:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99847 * 2 1 4 4 O 1.20834 * 119.99799 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00342 * 179.97438 * 3 2 1 6 6 C 1.53002 * 110.29334 * 300.71075 * 5 3 2 7 7 C 1.54618 * 110.33003 * 178.56741 * 5 3 2 8 8 C 1.55108 * 102.76103 * 219.32143 * 7 5 3 9 9 N 1.48120 * 103.31431 * 37.26536 * 8 7 5 10 10 C 1.34779 * 127.03131 * 140.72233 * 9 8 7 11 11 O 1.21615 * 119.99822 * 174.92583 * 10 9 8 12 12 C 1.47426 * 120.00345 * 354.93353 * 10 9 8 13 13 C 1.39218 * 120.28249 * 42.84038 * 12 10 9 14 14 C 1.38234 * 120.09205 * 179.72145 * 13 12 10 15 15 C 1.38821 * 120.67171 * 0.56222 * 14 13 12 16 16 C 1.37597 * 120.57367 * 359.71606 * 15 14 13 17 17 C 1.40704 * 119.88047 * 0.02562 * 16 15 14 18 18 C 1.40888 * 120.32895 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00293 * 206.90584 * 18 17 16 20 20 C 1.40277 * 119.99884 * 26.90096 * 18 17 16 21 21 N 1.30634 * 119.99947 * 15.35889 * 20 18 17 22 22 Si 1.86800 * 119.99955 * 195.35413 * 20 18 17 23 23 H 1.48496 * 109.47066 * 60.00367 * 22 20 18 24 24 H 1.48502 * 109.47022 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47098 * 300.00273 * 22 20 18 26 26 C 1.47482 * 105.93249 * 320.76342 * 9 8 7 27 27 H 1.09000 * 109.47372 * 59.99626 * 1 2 3 28 28 H 1.08994 * 109.46651 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46847 * 299.99102 * 1 2 3 30 30 H 1.08999 * 109.47204 * 59.29310 * 6 5 3 31 31 H 1.08995 * 109.47434 * 179.29978 * 6 5 3 32 32 H 1.08998 * 109.46472 * 299.29300 * 6 5 3 33 33 H 1.08995 * 110.73953 * 337.60102 * 7 5 3 34 34 H 1.09001 * 110.73384 * 100.92758 * 7 5 3 35 35 H 1.08998 * 110.59293 * 278.82874 * 8 7 5 36 36 H 1.08996 * 110.82741 * 155.81831 * 8 7 5 37 37 H 1.07999 * 119.95684 * 0.02562 * 13 12 10 38 38 H 1.08000 * 119.65809 * 180.26039 * 14 13 12 39 39 H 1.08000 * 119.71335 * 179.74041 * 15 14 13 40 40 H 1.08000 * 120.06256 * 180.02562 * 16 15 14 41 41 H 0.97002 * 119.99572 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.91192 * 266.08224 * 26 9 8 43 43 H 1.09009 * 109.91150 * 144.80453 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.1341 0.5712 1.2348 7 6 4.0268 2.7506 -0.0358 8 6 5.2476 2.7050 -0.9914 9 7 4.8435 1.7126 -2.0140 10 6 5.0747 1.7737 -3.3404 11 8 4.7653 0.8397 -4.0552 12 6 5.7028 2.9726 -3.9248 13 6 6.7827 3.5797 -3.2896 14 6 7.3723 4.7004 -3.8441 15 6 6.8917 5.2404 -5.0292 16 6 5.8224 4.6660 -5.6771 17 6 5.2076 3.5215 -5.1366 18 6 4.1118 2.9260 -5.7919 19 1 3.3840 2.3642 -5.2253 20 6 3.9659 3.0629 -7.1803 21 7 4.9728 3.4709 -7.9058 22 14 2.3320 2.6616 -7.9919 23 1 1.2725 3.5385 -7.4317 24 1 2.4381 2.8861 -9.4560 25 1 1.9865 1.2407 -7.7332 26 6 4.1355 0.6444 -1.2840 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 3.8223 -0.4732 1.2331 31 1 5.2226 0.6255 1.2154 32 1 3.7620 1.0601 2.1351 33 1 3.2427 3.3897 -0.4418 34 1 4.3245 3.0865 0.9575 35 1 6.1380 2.3689 -0.4602 36 1 5.4189 3.6798 -1.4481 37 1 7.1634 3.1718 -2.3650 38 1 8.2123 5.1632 -3.3476 39 1 7.3615 6.1188 -5.4465 40 1 5.4555 5.0928 -6.5989 41 1 4.8720 3.5652 -8.8659 42 1 4.8314 -0.1547 -1.0285 43 1 3.3235 0.2517 -1.8961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601319141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:04 Heat of formation + Delta-G solvation = -115.722164 kcal Electronic energy + Delta-G solvation = -27105.381193 eV Core-core repulsion = 23307.610289 eV Total energy + Delta-G solvation = -3797.770904 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.12543 -40.83943 -39.17001 -38.22744 -37.50778 -35.69614 -34.17407 -31.89179 -31.36683 -30.65278 -28.68975 -27.93284 -27.08163 -25.48803 -23.80429 -23.15707 -22.75415 -20.74954 -20.43971 -19.14954 -18.46099 -18.28912 -17.63583 -17.34193 -17.25396 -16.80536 -16.40180 -16.04830 -15.45664 -15.13047 -14.98676 -14.54714 -14.47331 -14.38983 -13.96600 -13.75221 -13.66218 -13.51514 -13.43660 -13.08907 -13.01045 -12.91243 -12.86450 -12.68338 -12.55957 -12.25285 -12.12801 -11.88485 -11.85312 -11.73811 -11.49087 -11.45410 -11.14724 -10.55732 -9.71740 -9.36946 -9.34019 -8.74826 -6.42191 0.61611 0.99885 1.00340 1.26982 1.38239 1.46376 1.60197 1.97823 2.13613 2.24012 2.67462 3.18810 3.40461 3.65390 3.71328 3.91077 4.12770 4.15586 4.22948 4.24992 4.30121 4.41467 4.52732 4.61358 4.62270 4.68226 4.71880 4.83399 4.87502 4.89984 4.98103 5.05308 5.10342 5.22346 5.26022 5.31288 5.33368 5.43630 5.58641 5.85656 5.98996 6.10863 6.27164 6.52324 6.57829 6.66051 6.83736 6.92804 7.43721 8.21235 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.004749 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.106763 B = 5894.725899 C = 7436.671309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.533 6.533 5 C -0.060 4.060 6 C -0.128 4.128 7 C -0.115 4.115 8 C 0.096 3.904 9 N -0.630 5.630 10 C 0.591 3.409 11 O -0.587 6.587 12 C -0.275 4.275 13 C -0.052 4.052 14 C -0.237 4.237 15 C -0.090 4.090 16 C -0.187 4.187 17 C 0.114 3.886 18 C -0.468 4.468 19 H 0.054 0.946 20 C 0.039 3.961 21 N -0.810 5.810 22 Si 0.972 3.028 23 H -0.258 1.258 24 H -0.251 1.251 25 H -0.274 1.274 26 C 0.120 3.880 27 H 0.048 0.952 28 H 0.134 0.866 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.293 0.707 42 H 0.102 0.898 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 -3.190 18.192 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.314 3.686 4 O -0.423 6.423 5 C -0.062 4.062 6 C -0.185 4.185 7 C -0.153 4.153 8 C -0.026 4.026 9 N -0.365 5.365 10 C 0.385 3.615 11 O -0.468 6.468 12 C -0.279 4.279 13 C -0.071 4.071 14 C -0.256 4.256 15 C -0.108 4.108 16 C -0.206 4.206 17 C 0.111 3.889 18 C -0.496 4.496 19 H 0.072 0.928 20 C -0.178 4.178 21 N -0.435 5.435 22 Si 0.793 3.207 23 H -0.182 1.182 24 H -0.175 1.175 25 H -0.199 1.199 26 C -0.003 4.003 27 H 0.067 0.933 28 H 0.153 0.847 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.149 0.851 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.138 0.862 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.120 0.880 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.113 -3.363 17.454 17.901 hybrid contribution -1.271 -0.196 -1.113 1.701 sum -3.385 -3.559 16.341 17.063 Atomic orbital electron populations 1.23568 0.74890 1.05847 1.02331 1.86497 1.24919 1.32549 1.83467 1.23950 0.92452 0.81264 0.70901 1.90646 1.67708 1.37398 1.46500 1.21560 0.85952 0.99826 0.98867 1.21913 1.03091 1.00718 0.92770 1.22927 0.97478 0.92418 1.02431 1.23000 0.98024 0.93608 0.87926 1.48810 1.57423 1.24671 1.05577 1.18249 0.76946 0.86617 0.79719 1.90664 1.55035 1.40303 1.60830 1.19646 1.05069 1.00456 1.02763 1.21057 0.93606 0.94503 0.97918 1.20780 1.04955 1.00821 0.99064 1.21167 0.95465 0.98846 0.95366 1.21289 1.00414 0.97232 1.01658 1.17731 0.90972 0.90338 0.89860 1.19620 1.08231 1.28501 0.93289 0.92798 1.26689 1.01092 0.92386 0.97610 1.69733 1.31795 1.33676 1.08304 0.85414 0.77899 0.79315 0.78074 1.18199 1.17475 1.19874 1.22011 0.96671 0.90980 0.90656 0.93299 0.84743 0.90997 0.90370 0.88272 0.90003 0.91998 0.85148 0.87008 0.89667 0.84948 0.84760 0.86202 0.87725 0.89633 0.88030 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.36 -8.89 10.46 -51.40 -0.54 -9.43 16 3 C 0.47 13.22 6.37 71.23 0.45 13.68 16 4 O -0.53 -18.12 15.18 21.94 0.33 -17.79 16 5 C -0.06 -1.39 0.90 -52.04 -0.05 -1.44 16 6 C -0.13 -1.70 8.15 71.98 0.59 -1.11 16 7 C -0.11 -2.63 5.98 31.87 0.19 -2.44 16 8 C 0.10 2.49 5.49 86.79 0.48 2.97 16 9 N -0.63 -23.16 3.29 -812.90 -2.68 -25.83 16 10 C 0.59 29.13 6.91 86.66 0.60 29.73 16 11 O -0.59 -34.14 15.74 -4.08 -0.06 -34.21 16 12 C -0.27 -13.84 5.46 -19.70 -0.11 -13.94 16 13 C -0.05 -2.13 7.74 22.50 0.17 -1.96 16 14 C -0.24 -9.27 10.03 22.41 0.22 -9.05 16 15 C -0.09 -3.94 10.01 22.26 0.22 -3.72 16 16 C -0.19 -9.81 8.67 22.72 0.20 -9.61 16 17 C 0.11 6.49 5.57 -21.11 -0.12 6.37 16 18 C -0.47 -27.86 7.86 23.41 0.18 -27.68 16 19 H 0.05 3.39 6.77 -2.91 -0.02 3.37 16 20 C 0.04 2.12 5.18 85.37 0.44 2.56 16 21 N -0.81 -44.04 10.97 21.88 0.24 -43.80 16 22 Si 0.97 42.29 29.59 68.60 2.03 44.32 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 24 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 C 0.12 3.62 6.25 86.53 0.54 4.17 16 27 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 28 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 30 H 0.08 0.99 8.13 -2.39 -0.02 0.97 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 1.85 6.90 -2.39 -0.02 1.84 16 34 H 0.13 1.90 7.85 -2.39 -0.02 1.88 16 35 H 0.11 2.01 8.13 -2.39 -0.02 1.99 16 36 H 0.08 2.47 5.96 -2.39 -0.01 2.46 16 37 H 0.13 4.27 6.56 -2.91 -0.02 4.25 16 38 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 39 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 40 H 0.10 5.73 6.25 -2.91 -0.02 5.71 16 41 H 0.29 14.26 8.29 -92.71 -0.77 13.49 16 42 H 0.10 2.55 7.68 -2.39 -0.02 2.53 16 43 H 0.04 1.64 7.62 -2.38 -0.02 1.62 16 Total: -1.00 -78.59 354.65 5.57 -73.02 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 1.03 Total: 23.49 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 5.22 Total: -9.77 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: -2.44 Total: -69.64 kcal Atomic # 8 Polarization: -61.15 SS G_CDS: -0.27 Total: -61.42 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -78.59 5.57 -73.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601319141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.702 kcal (2) G-P(sol) polarization free energy of solvation -78.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds