Wall clock time and date at job start Tue Mar 31 2020 11:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38295 * 119.92473 * 2 1 4 4 C 1.38097 * 120.07123 * 179.97438 * 3 2 1 5 5 C 1.38921 * 119.92636 * 359.97438 * 4 3 2 6 6 N 1.39748 * 120.07191 * 179.97438 * 5 4 3 7 7 C 1.38692 * 119.99841 * 143.77018 * 6 5 4 8 8 N 1.29704 * 124.95013 * 173.62781 * 7 6 5 9 9 C 1.32073 * 116.87497 * 180.02562 * 8 7 6 10 10 C 1.50695 * 122.70981 * 180.02562 * 9 8 7 11 11 N 1.46896 * 109.47115 * 274.97588 * 10 9 8 12 12 C 1.46906 * 110.99825 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47140 * 34.99648 * 12 11 10 14 14 C 1.53003 * 109.46634 * 274.99412 * 12 11 10 15 15 C 1.50700 * 109.46875 * 154.99822 * 12 11 10 16 16 H 1.07998 * 120.00286 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99700 * 179.97438 * 15 12 11 18 18 N 1.31517 * 120.00131 * 0.02562 * 17 15 12 19 19 Si 1.86809 * 119.99975 * 180.02562 * 17 15 12 20 20 H 1.48507 * 109.46626 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47259 * 120.00437 * 19 17 15 22 22 H 1.48497 * 109.46889 * 240.00724 * 19 17 15 23 23 C 1.33365 * 114.58062 * 359.97438 * 9 8 7 24 24 S 1.70964 * 124.94908 * 353.62743 * 7 6 5 25 25 C 1.38917 * 119.84901 * 0.24948 * 5 4 3 26 26 C 1.38094 * 119.92454 * 359.52309 * 25 5 4 27 27 H 1.09002 * 109.47388 * 89.99736 * 1 2 3 28 28 H 1.08999 * 109.47698 * 210.00109 * 1 2 3 29 29 H 1.09001 * 109.47021 * 330.00462 * 1 2 3 30 30 H 1.07991 * 119.96129 * 359.97407 * 3 2 1 31 31 H 1.08001 * 120.03177 * 180.02562 * 4 3 2 32 32 H 0.97004 * 120.00482 * 323.77250 * 6 5 4 33 33 H 1.09004 * 109.47065 * 34.97791 * 10 9 8 34 34 H 1.08999 * 109.47051 * 154.97268 * 10 9 8 35 35 H 1.00900 * 110.99962 * 56.04586 * 11 10 9 36 36 H 1.09000 * 109.46574 * 180.02562 * 14 12 11 37 37 H 1.08994 * 109.47549 * 299.99984 * 14 12 11 38 38 H 1.08998 * 109.47022 * 60.00599 * 14 12 11 39 39 H 0.97003 * 119.99646 * 179.97438 * 18 17 15 40 40 H 1.07998 * 125.95196 * 179.97438 * 23 9 8 41 41 H 1.08001 * 120.03653 * 179.72025 * 25 5 4 42 42 H 1.08004 * 119.96030 * 180.21393 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2740 -0.0001 0.0016 6 7 5.6715 -0.0001 0.0016 7 6 6.3649 -0.9683 0.7124 8 7 7.6514 -1.1310 0.6855 9 6 8.1455 -2.1064 1.4263 10 6 9.6198 -2.4112 1.4936 11 7 9.9889 -3.2929 0.3782 12 6 11.4224 -3.6125 0.4119 13 1 11.7526 -3.6920 1.4476 14 6 12.2087 -2.5038 -0.2905 15 6 11.6616 -4.9225 -0.2936 16 1 10.8320 -5.4632 -0.7245 17 6 12.9399 -5.4300 -0.3901 18 7 13.9503 -4.7713 0.1341 19 14 13.2367 -7.0535 -1.2654 20 1 11.9449 -7.5906 -1.7634 21 1 14.1570 -6.8374 -2.4106 22 1 13.8440 -8.0226 -0.3182 23 6 7.2344 -2.7991 2.1109 24 16 5.6485 -2.1213 1.7517 25 6 3.5778 -1.2022 -0.0031 26 6 2.1968 -1.1985 0.0011 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6551 2.1327 -0.0004 31 1 4.1160 2.1385 0.0010 32 1 6.1566 0.6771 -0.4955 33 1 10.1863 -1.4824 1.4255 34 1 9.8457 -2.9060 2.4381 35 1 9.7300 -2.8837 -0.5071 36 1 13.2722 -2.7412 -0.2658 37 1 11.8785 -2.4243 -1.3262 38 1 12.0356 -1.5563 0.2199 39 1 14.8496 -5.1286 0.0665 40 1 7.4340 -3.6309 2.7701 41 1 4.1159 -2.1386 -0.0068 42 1 1.6550 -2.1328 0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:41 Heat of formation + Delta-G solvation = 75.227946 kcal Electronic energy + Delta-G solvation = -22584.607667 eV Core-core repulsion = 19270.162603 eV Total energy + Delta-G solvation = -3314.445064 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24593 -39.46018 -36.54389 -35.58674 -32.68420 -31.86313 -31.34673 -29.96653 -28.10482 -26.49175 -25.27717 -24.88257 -23.84121 -22.64199 -21.45438 -20.14918 -19.90455 -18.33861 -17.11706 -16.52094 -16.25441 -15.80568 -15.56400 -14.91045 -14.63311 -14.31857 -14.18940 -14.11598 -13.84483 -13.70053 -13.11502 -13.01354 -12.76336 -12.51430 -12.48324 -11.90827 -11.65546 -11.50690 -11.43731 -11.18119 -10.92042 -10.86131 -10.63916 -10.42714 -10.09818 -9.87341 -9.56871 -9.31548 -9.18883 -8.96827 -8.79035 -8.33176 -7.58208 -7.19222 -5.95067 -3.97957 0.70715 0.99508 1.19560 1.34926 1.92732 2.73737 3.06726 3.34158 3.41574 3.42128 3.47637 4.45059 4.47966 4.54429 4.64353 4.71366 4.94148 5.03339 5.23209 5.27590 5.36125 5.36462 5.50479 5.59740 5.62966 5.66540 5.71257 5.90866 5.97018 6.09596 6.23930 6.27462 6.37708 6.43935 6.75037 6.79917 6.90944 7.10748 7.14443 7.38776 7.78542 7.92319 8.02827 8.30136 8.57008 8.64238 9.09534 9.67084 11.11991 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.027400 B = 0.002307 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.664352 B =12132.134937 C =12400.680123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.111 4.111 3 C -0.090 4.090 4 C -0.144 4.144 5 C 0.163 3.837 6 N -0.637 5.637 7 C 0.289 3.711 8 N -0.523 5.523 9 C 0.119 3.881 10 C 0.131 3.869 11 N -0.677 5.677 12 C 0.211 3.789 13 H 0.035 0.965 14 C -0.169 4.169 15 C -0.492 4.492 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.276 4.276 24 S 0.106 5.894 25 C -0.156 4.156 26 C -0.083 4.083 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.420 0.580 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.330 0.670 36 H 0.089 0.911 37 H 0.027 0.973 38 H 0.006 0.994 39 H 0.259 0.741 40 H 0.177 0.823 41 H 0.134 0.866 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.962 12.006 2.259 28.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.108 4.108 4 C -0.166 4.166 5 C 0.066 3.934 6 N -0.269 5.269 7 C -0.081 4.081 8 N -0.246 5.246 9 C -0.011 4.011 10 C -0.001 4.001 11 N -0.307 5.307 12 C 0.103 3.897 13 H 0.053 0.947 14 C -0.228 4.228 15 C -0.531 4.531 16 H 0.081 0.919 17 C -0.147 4.147 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.416 4.416 24 S 0.355 5.645 25 C -0.179 4.179 26 C -0.102 4.102 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.259 0.741 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.146 0.854 36 H 0.108 0.892 37 H 0.046 0.954 38 H 0.025 0.975 39 H 0.068 0.932 40 H 0.195 0.805 41 H 0.152 0.848 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -26.660 11.473 2.650 29.145 hybrid contribution 1.951 0.162 -1.016 2.205 sum -24.709 11.636 1.634 27.361 Atomic orbital electron populations 1.20754 0.91010 1.02784 1.02281 1.19914 0.96273 0.93042 1.02017 1.20849 0.93120 0.97793 0.99075 1.20871 0.94456 0.96431 1.04811 1.17687 0.81366 0.94359 0.99967 1.41112 1.02794 1.30696 1.52281 1.23377 0.91410 0.95922 0.97342 1.66173 1.08663 1.23605 1.26137 1.20023 0.98316 0.90008 0.92765 1.20473 0.85874 0.96073 0.97694 1.60889 1.21776 1.44109 1.03907 1.19210 0.80214 0.93545 0.96690 0.94727 1.22425 1.05886 0.96290 0.98219 1.21183 0.92727 1.04474 1.34678 0.91903 1.24959 0.96120 0.97594 0.95984 1.69899 0.99323 1.38494 1.46046 0.86449 0.78099 0.83660 0.79228 1.19758 1.21249 1.21153 1.26597 0.93258 1.09257 1.12520 1.83938 1.10353 1.28384 1.41868 1.21157 0.94916 0.97330 1.04464 1.20864 0.92997 0.97908 0.98388 0.91267 0.91510 0.91622 0.85543 0.85440 0.74079 0.94480 0.89961 0.85389 0.89241 0.95360 0.97503 0.93161 0.80543 0.84848 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.01 36.00 0.36 -0.19 16 2 C -0.11 -0.82 5.88 -104.58 -0.62 -1.44 16 3 C -0.09 -0.65 9.69 -39.61 -0.38 -1.04 16 4 C -0.14 -1.20 9.97 -39.38 -0.39 -1.59 16 5 C 0.16 1.67 6.20 -83.74 -0.52 1.15 16 6 N -0.64 -7.36 5.48 -11.63 -0.06 -7.42 16 7 C 0.29 4.14 7.94 -87.59 -0.70 3.44 16 8 N -0.52 -8.89 10.59 -11.34 -0.12 -9.01 16 9 C 0.12 2.07 6.25 -84.19 -0.53 1.54 16 10 C 0.13 2.52 5.92 -4.98 -0.03 2.49 16 11 N -0.68 -15.14 6.22 -109.22 -0.68 -15.82 16 12 C 0.21 5.43 2.57 -68.86 -0.18 5.25 16 13 H 0.03 0.96 7.80 -51.93 -0.40 0.55 16 14 C -0.17 -4.20 8.94 37.16 0.33 -3.87 16 15 C -0.49 -13.87 8.84 -34.44 -0.30 -14.18 16 16 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 17 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 18 N -0.90 -25.99 11.32 55.43 0.63 -25.36 16 19 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 C -0.28 -4.17 11.09 29.03 0.32 -3.85 16 24 S 0.11 1.35 19.42 -107.50 -2.09 -0.74 16 25 C -0.16 -1.57 8.18 -39.38 -0.32 -1.90 16 26 C -0.08 -0.68 9.69 -39.62 -0.38 -1.07 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 29 H 0.06 0.27 8.08 -51.93 -0.42 -0.15 16 30 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 31 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.42 4.29 8.95 -40.82 -0.37 3.93 16 33 H 0.04 0.73 7.44 -51.93 -0.39 0.35 16 34 H 0.08 1.52 8.01 -51.93 -0.42 1.10 16 35 H 0.33 7.40 8.47 -39.29 -0.33 7.07 16 36 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 37 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 38 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.18 2.40 8.06 -52.49 -0.42 1.98 16 41 H 0.13 1.44 5.95 -49.19 -0.29 1.15 16 42 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -30.90 361.29 -11.15 -42.05 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.82 Total: 7.90 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -3.43 Total: -13.84 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.24 Total: -57.62 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.09 Total: -0.74 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.90 -11.15 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.274 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds