Wall clock time and date at job start Tue Mar 31 2020 11:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38295 * 119.92473 * 2 1 4 4 C 1.38097 * 120.07123 * 179.97438 * 3 2 1 5 5 C 1.38921 * 119.92636 * 359.97438 * 4 3 2 6 6 N 1.39748 * 120.07191 * 179.97438 * 5 4 3 7 7 C 1.38692 * 119.99841 * 143.77018 * 6 5 4 8 8 N 1.29704 * 124.95013 * 173.62781 * 7 6 5 9 9 C 1.32073 * 116.87497 * 180.02562 * 8 7 6 10 10 C 1.50695 * 122.70981 * 180.02562 * 9 8 7 11 11 N 1.46896 * 109.47115 * 274.97588 * 10 9 8 12 12 C 1.46906 * 110.99825 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47140 * 34.99648 * 12 11 10 14 14 C 1.53003 * 109.46634 * 274.99412 * 12 11 10 15 15 C 1.50700 * 109.46875 * 154.99822 * 12 11 10 16 16 H 1.07998 * 120.00286 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99700 * 179.97438 * 15 12 11 18 18 N 1.31517 * 120.00131 * 0.02562 * 17 15 12 19 19 Si 1.86809 * 119.99975 * 180.02562 * 17 15 12 20 20 H 1.48507 * 109.46626 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47259 * 120.00437 * 19 17 15 22 22 H 1.48497 * 109.46889 * 240.00724 * 19 17 15 23 23 C 1.33365 * 114.58062 * 359.97438 * 9 8 7 24 24 S 1.70964 * 124.94908 * 353.62743 * 7 6 5 25 25 C 1.38917 * 119.84901 * 0.24948 * 5 4 3 26 26 C 1.38094 * 119.92454 * 359.52309 * 25 5 4 27 27 H 1.09002 * 109.47388 * 89.99736 * 1 2 3 28 28 H 1.08999 * 109.47698 * 210.00109 * 1 2 3 29 29 H 1.09001 * 109.47021 * 330.00462 * 1 2 3 30 30 H 1.07991 * 119.96129 * 359.97407 * 3 2 1 31 31 H 1.08001 * 120.03177 * 180.02562 * 4 3 2 32 32 H 0.97004 * 120.00482 * 323.77250 * 6 5 4 33 33 H 1.09004 * 109.47065 * 34.97791 * 10 9 8 34 34 H 1.08999 * 109.47051 * 154.97268 * 10 9 8 35 35 H 1.00900 * 110.99962 * 56.04586 * 11 10 9 36 36 H 1.09000 * 109.46574 * 180.02562 * 14 12 11 37 37 H 1.08994 * 109.47549 * 299.99984 * 14 12 11 38 38 H 1.08998 * 109.47022 * 60.00599 * 14 12 11 39 39 H 0.97003 * 119.99646 * 179.97438 * 18 17 15 40 40 H 1.07998 * 125.95196 * 179.97438 * 23 9 8 41 41 H 1.08001 * 120.03653 * 179.72025 * 25 5 4 42 42 H 1.08004 * 119.96030 * 180.21393 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2740 -0.0001 0.0016 6 7 5.6715 -0.0001 0.0016 7 6 6.3649 -0.9683 0.7124 8 7 7.6514 -1.1310 0.6855 9 6 8.1455 -2.1064 1.4263 10 6 9.6198 -2.4112 1.4936 11 7 9.9889 -3.2929 0.3782 12 6 11.4224 -3.6125 0.4119 13 1 11.7526 -3.6920 1.4476 14 6 12.2087 -2.5038 -0.2905 15 6 11.6616 -4.9225 -0.2936 16 1 10.8320 -5.4632 -0.7245 17 6 12.9399 -5.4300 -0.3901 18 7 13.9503 -4.7713 0.1341 19 14 13.2367 -7.0535 -1.2654 20 1 11.9449 -7.5906 -1.7634 21 1 14.1570 -6.8374 -2.4106 22 1 13.8440 -8.0226 -0.3182 23 6 7.2344 -2.7991 2.1109 24 16 5.6485 -2.1213 1.7517 25 6 3.5778 -1.2022 -0.0031 26 6 2.1968 -1.1985 0.0011 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6551 2.1327 -0.0004 31 1 4.1160 2.1385 0.0010 32 1 6.1566 0.6771 -0.4955 33 1 10.1863 -1.4824 1.4255 34 1 9.8457 -2.9060 2.4381 35 1 9.7300 -2.8837 -0.5071 36 1 13.2722 -2.7412 -0.2658 37 1 11.8785 -2.4243 -1.3262 38 1 12.0356 -1.5563 0.2199 39 1 14.8496 -5.1286 0.0665 40 1 7.4340 -3.6309 2.7701 41 1 4.1159 -2.1386 -0.0068 42 1 1.6550 -2.1328 0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602864209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:41 Heat of formation + Delta-G solvation = 56.897902 kcal Electronic energy + Delta-G solvation = -22585.402517 eV Core-core repulsion = 19270.162603 eV Total energy + Delta-G solvation = -3315.239914 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15901 -40.41405 -37.88056 -36.94386 -34.54720 -32.79073 -31.98317 -31.35529 -29.65435 -27.30450 -27.16423 -26.41600 -24.84522 -23.50042 -22.21083 -22.13036 -21.01618 -19.38790 -18.30979 -17.97793 -17.58453 -16.83537 -16.53569 -16.43481 -16.00829 -15.71231 -15.19200 -14.93774 -14.76202 -14.63737 -14.55857 -14.33186 -13.98144 -13.65344 -13.41594 -13.18773 -12.95165 -12.91181 -12.80446 -12.54686 -12.39287 -12.21097 -12.19158 -12.10345 -11.83232 -11.62051 -11.05805 -10.71518 -10.49371 -10.24863 -9.94103 -9.70726 -9.02323 -8.50245 -8.09661 -6.20879 -0.23468 0.11655 0.35376 0.48669 0.83010 1.42252 1.43499 1.56389 1.78904 1.87658 2.44830 2.76533 3.18244 3.48673 3.85251 3.90250 3.97544 4.09061 4.18456 4.36990 4.44797 4.45918 4.61384 4.61777 4.72628 4.82763 4.83703 4.89443 4.93612 5.02724 5.08512 5.12287 5.20305 5.28747 5.37177 5.38664 5.67295 5.68045 5.69826 5.79132 6.06101 6.22364 6.24856 6.59693 6.71180 6.90503 6.92766 7.48496 8.96094 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.027400 B = 0.002307 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.664352 B =12132.134937 C =12400.680123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.109 4.109 3 C -0.091 4.091 4 C -0.143 4.143 5 C 0.137 3.863 6 N -0.631 5.631 7 C 0.281 3.719 8 N -0.558 5.558 9 C 0.097 3.903 10 C 0.137 3.863 11 N -0.676 5.676 12 C 0.216 3.784 13 H 0.010 0.990 14 C -0.155 4.155 15 C -0.513 4.513 16 H 0.053 0.947 17 C 0.007 3.993 18 N -0.922 5.922 19 Si 0.963 3.037 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.279 1.279 23 C -0.288 4.288 24 S 0.170 5.830 25 C -0.172 4.172 26 C -0.090 4.090 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.142 0.858 32 H 0.424 0.576 33 H 0.028 0.972 34 H 0.084 0.916 35 H 0.328 0.672 36 H 0.065 0.935 37 H 0.027 0.973 38 H 0.022 0.978 39 H 0.261 0.739 40 H 0.188 0.812 41 H 0.122 0.878 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.757 12.370 2.034 31.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.110 4.110 3 C -0.109 4.109 4 C -0.164 4.164 5 C 0.041 3.959 6 N -0.263 5.263 7 C -0.088 4.088 8 N -0.283 5.283 9 C -0.033 4.033 10 C 0.005 3.995 11 N -0.306 5.306 12 C 0.107 3.893 13 H 0.028 0.972 14 C -0.215 4.215 15 C -0.551 4.551 16 H 0.071 0.929 17 C -0.191 4.191 18 N -0.562 5.562 19 Si 0.789 3.211 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.429 4.429 24 S 0.419 5.581 25 C -0.195 4.195 26 C -0.108 4.108 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.263 0.737 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.144 0.856 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.205 0.795 41 H 0.139 0.861 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -29.503 11.861 2.423 31.891 hybrid contribution 2.601 0.149 -0.941 2.770 sum -26.903 12.010 1.482 29.499 Atomic orbital electron populations 1.20819 0.89083 1.03805 1.03101 1.20286 0.97730 0.92699 1.00280 1.21215 0.92765 0.98985 0.97969 1.21108 0.95105 0.96310 1.03905 1.17917 0.80604 0.95329 1.02006 1.41207 1.03415 1.30006 1.51695 1.23663 0.91177 0.96518 0.97487 1.66105 1.10207 1.24511 1.27470 1.19688 0.97400 0.91516 0.94658 1.20364 0.87722 0.94945 0.96440 1.60767 1.19553 1.45484 1.04796 1.18992 0.82196 0.93204 0.94880 0.97212 1.22237 1.04081 0.96845 0.98322 1.21422 0.92787 1.05642 1.35285 0.92882 1.25738 0.95828 1.00918 0.96582 1.70016 0.99657 1.39868 1.46666 0.85429 0.77966 0.79545 0.78178 1.19462 1.20619 1.20495 1.26853 0.94859 1.09192 1.11955 1.83682 1.07520 1.26734 1.40176 1.21182 0.95824 0.96798 1.05656 1.21110 0.92367 0.99235 0.98097 0.90425 0.90814 0.90382 0.82950 0.84000 0.73661 0.95374 0.89747 0.85555 0.91580 0.95351 0.95886 0.92939 0.79497 0.86052 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 71.24 0.71 -0.02 16 2 C -0.11 -1.30 5.88 -19.84 -0.12 -1.42 16 3 C -0.09 -1.06 9.69 22.25 0.22 -0.84 16 4 C -0.14 -2.09 9.97 22.40 0.22 -1.87 16 5 C 0.14 2.64 6.20 38.21 0.24 2.88 16 6 N -0.63 -14.28 5.48 -190.71 -1.05 -15.32 16 7 C 0.28 7.98 7.94 179.29 1.42 9.40 16 8 N -0.56 -19.26 10.59 -189.80 -2.01 -21.27 16 9 C 0.10 3.44 6.25 41.42 0.26 3.70 16 10 C 0.14 5.44 5.92 85.56 0.51 5.94 16 11 N -0.68 -31.07 6.22 -499.46 -3.11 -34.17 16 12 C 0.22 11.41 2.57 44.17 0.11 11.52 16 13 H 0.01 0.57 7.80 -2.39 -0.02 0.55 16 14 C -0.16 -7.91 8.94 71.98 0.64 -7.27 16 15 C -0.51 -29.43 8.84 25.60 0.23 -29.21 16 16 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 17 C 0.01 0.42 5.30 84.65 0.45 0.87 16 18 N -0.92 -54.05 11.32 21.45 0.24 -53.81 16 19 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 C -0.29 -8.64 11.09 66.72 0.74 -7.90 16 24 S 0.17 4.16 19.42 -56.49 -1.10 3.06 16 25 C -0.17 -3.26 8.18 22.40 0.18 -3.08 16 26 C -0.09 -1.30 9.69 22.25 0.22 -1.08 16 27 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 0.41 8.08 -2.39 -0.02 0.39 16 29 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 30 H 0.15 0.95 8.06 -2.92 -0.02 0.93 16 31 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.42 8.57 8.95 -92.71 -0.83 7.74 16 33 H 0.03 1.15 7.44 -2.39 -0.02 1.13 16 34 H 0.08 3.23 8.01 -2.39 -0.02 3.21 16 35 H 0.33 15.12 8.47 -89.69 -0.76 14.36 16 36 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 37 H 0.03 1.38 8.13 -2.39 -0.02 1.37 16 38 H 0.02 1.04 7.45 -2.39 -0.02 1.03 16 39 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.19 5.01 8.06 -2.91 -0.02 4.98 16 41 H 0.12 2.53 5.95 -5.01 -0.03 2.50 16 42 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -66.65 361.29 0.49 -66.16 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.55 Total: 26.73 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 6.03 Total: -18.37 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.92 Total: -124.57 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.10 Total: 3.06 kcal Total: -66.65 0.49 -66.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.058 kcal (2) G-P(sol) polarization free energy of solvation -66.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds