Wall clock time and date at job start Tue Mar 31 2020 11:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 S 1.75815 * 125.48275 * 127.53500 * 3 2 1 5 5 C 1.70567 * 91.69641 * 180.20944 * 4 3 2 6 6 C 1.33489 * 111.21404 * 359.80442 * 5 4 3 7 7 C 1.37429 * 125.48082 * 307.39243 * 3 2 1 8 8 N 1.39460 * 123.50773 * 359.97438 * 7 3 2 9 9 C 1.46957 * 110.99933 * 119.73322 * 8 7 3 10 10 C 1.53049 * 109.38711 * 176.81810 * 9 8 7 11 11 N 1.46963 * 109.36098 * 58.38977 * 10 9 8 12 12 C 1.46903 * 110.99739 * 176.81417 * 11 10 9 13 13 C 1.52998 * 109.46547 * 197.57182 * 12 11 10 14 14 C 1.50694 * 115.55414 * 292.64246 * 13 12 11 15 15 H 1.08002 * 120.00459 * 143.52173 * 14 13 12 16 16 C 1.37877 * 120.00054 * 323.52253 * 14 13 12 17 17 N 1.31518 * 120.00047 * 340.04634 * 16 14 13 18 18 Si 1.86802 * 120.00241 * 160.04539 * 16 14 13 19 19 H 1.48504 * 109.46902 * 59.99913 * 18 16 14 20 20 H 1.48499 * 109.47410 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47219 * 300.00369 * 18 16 14 22 22 C 1.53003 * 117.49458 * 146.97484 * 13 12 11 23 23 C 1.53004 * 117.49677 * 78.31950 * 13 12 11 24 24 C 1.46959 * 110.88128 * 300.68111 * 11 10 9 25 25 C 1.46954 * 111.02111 * 355.92074 * 8 7 3 26 26 H 1.07999 * 124.39225 * 179.81366 * 5 4 3 27 27 H 1.07996 * 122.46589 * 179.97438 * 6 5 4 28 28 H 1.09004 * 109.49186 * 56.84014 * 9 8 7 29 29 H 1.09000 * 109.48871 * 296.79840 * 9 8 7 30 30 H 1.08998 * 109.49257 * 178.35684 * 10 9 8 31 31 H 1.09001 * 109.48808 * 298.42735 * 10 9 8 32 32 H 1.08997 * 109.47323 * 317.57330 * 12 11 10 33 33 H 1.09003 * 109.46769 * 77.57594 * 12 11 10 34 34 H 0.97002 * 120.00037 * 185.16136 * 17 16 14 35 35 H 1.08996 * 117.50154 * 359.97438 * 22 13 12 36 36 H 1.09005 * 117.50011 * 145.02390 * 22 13 12 37 37 H 1.09002 * 117.49645 * 214.97496 * 23 13 12 38 38 H 1.08998 * 117.49901 * 359.96390 * 23 13 12 39 39 H 1.08991 * 109.49123 * 179.28656 * 24 11 10 40 40 H 1.09002 * 109.48821 * 299.35338 * 24 11 10 41 41 H 1.09001 * 109.46960 * 63.20140 * 25 8 7 42 42 H 1.08999 * 109.50873 * 303.15207 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5882 0.8733 -1.1353 5 6 5.0060 0.2911 -0.3869 6 6 4.7158 -0.5009 0.6477 7 6 3.3660 -0.6786 0.8891 8 7 2.8663 -1.4690 1.9238 9 6 3.3129 -2.8622 1.7850 10 6 2.8109 -3.6779 2.9787 11 7 1.3445 -3.6014 3.0389 12 6 0.8182 -4.4345 4.1285 13 6 -0.6740 -4.6860 3.9029 14 6 -1.5631 -3.4755 4.0257 15 1 -2.4179 -3.3649 3.3748 16 6 -1.2854 -2.5090 4.9689 17 7 -0.5201 -2.7963 5.9992 18 14 -1.9961 -0.7914 4.7836 19 1 -3.4792 -0.8678 4.7741 20 1 -1.5518 0.0536 5.9210 21 1 -1.5231 -0.1949 3.5087 22 6 -1.2417 -6.0293 4.3655 23 6 -1.0635 -5.7470 2.8716 24 6 0.8979 -2.2083 3.1783 25 6 1.4000 -1.3926 1.9845 26 1 6.0085 0.5322 -0.7083 27 1 5.4792 -0.9690 1.2515 28 1 4.4021 -2.8938 1.7553 29 1 2.9117 -3.2825 0.8628 30 1 3.1163 -4.7178 2.8629 31 1 3.2341 -3.2745 3.8986 32 1 1.3485 -5.3865 4.1466 33 1 0.9605 -3.9211 5.0795 34 1 -0.3853 -2.1404 6.7011 35 1 -0.5521 -6.7340 4.8302 36 1 -2.2585 -6.0376 4.7583 37 1 -1.9631 -5.5696 2.2822 38 1 -0.2567 -6.2654 2.3535 39 1 -0.1912 -2.1767 3.2079 40 1 1.2994 -1.7882 4.1005 41 1 0.9768 -1.7960 1.0646 42 1 1.0942 -0.3528 2.1002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602882262.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:10 Heat of formation + Delta-G solvation = 134.244379 kcal Electronic energy + Delta-G solvation = -25050.991891 eV Core-core repulsion = 21739.105971 eV Total energy + Delta-G solvation = -3311.885919 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.31635 -37.82470 -36.40619 -36.08726 -33.62161 -32.40352 -30.67002 -29.58101 -27.50611 -25.77812 -24.65710 -23.09861 -22.62496 -21.04401 -20.80814 -19.36967 -19.05312 -18.78322 -16.71310 -16.11828 -15.53083 -15.05104 -14.83763 -14.62238 -14.48657 -14.17509 -14.04072 -13.60597 -13.49452 -13.24909 -12.89403 -12.82026 -12.69861 -12.44391 -12.16237 -11.78356 -11.54052 -11.31357 -11.06682 -11.04691 -10.79189 -10.69215 -10.42520 -10.25337 -10.17763 -10.05668 -9.55286 -9.22915 -9.01083 -8.85976 -8.62154 -8.07153 -7.79441 -7.28120 -6.13418 -4.05482 0.40258 1.16533 1.72692 2.24682 3.04285 3.24335 3.30414 3.38026 3.40023 3.80058 4.09285 4.29837 4.64511 4.82427 4.98055 5.01635 5.17563 5.36810 5.41836 5.58357 5.64525 5.67859 5.80292 5.84367 5.88920 5.97949 6.02818 6.22613 6.26250 6.41908 6.64136 6.65294 6.81908 6.83585 6.91931 7.00249 7.12603 7.18454 7.29827 7.42988 7.47760 7.64011 7.87082 8.09783 8.14679 8.46209 8.84657 9.41731 10.85928 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.004724 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.983374 B = 5925.293652 C = 6708.059576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.284 3.716 3 C -0.233 4.233 4 S 0.227 5.773 5 C -0.213 4.213 6 C -0.146 4.146 7 C 0.174 3.826 8 N -0.472 5.472 9 C 0.068 3.932 10 C 0.051 3.949 11 N -0.525 5.525 12 C 0.087 3.913 13 C 0.063 3.937 14 C -0.488 4.488 15 H 0.062 0.938 16 C 0.080 3.920 17 N -0.868 5.868 18 Si 0.864 3.136 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.266 1.266 22 C -0.203 4.203 23 C -0.198 4.198 24 C 0.045 3.955 25 C 0.044 3.956 26 H 0.174 0.826 27 H 0.151 0.849 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.087 0.913 34 H 0.264 0.736 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.139 0.861 40 H 0.033 0.967 41 H 0.059 0.941 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.559 4.656 -10.791 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.030 4.030 3 C -0.357 4.357 4 S 0.492 5.508 5 C -0.352 4.352 6 C -0.179 4.179 7 C 0.058 3.942 8 N -0.187 5.187 9 C -0.057 4.057 10 C -0.078 4.078 11 N -0.249 5.249 12 C -0.040 4.040 13 C 0.062 3.938 14 C -0.525 4.525 15 H 0.080 0.920 16 C -0.124 4.124 17 N -0.504 5.504 18 Si 0.690 3.310 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.242 4.242 23 C -0.236 4.236 24 C -0.082 4.082 25 C -0.083 4.083 26 H 0.191 0.809 27 H 0.168 0.832 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.156 0.844 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.666 5.654 -11.812 18.218 hybrid contribution 0.529 0.052 1.475 1.568 sum 13.195 5.706 -10.337 17.706 Atomic orbital electron populations 1.81428 1.10875 1.08869 1.07762 1.23922 0.90902 0.94061 0.94149 1.20300 0.89803 1.18476 1.07166 1.82941 0.92924 1.46371 1.28611 1.25076 1.04428 1.04015 1.01691 1.19554 0.94699 1.03291 1.00399 1.18604 0.92372 0.95378 0.87867 1.59092 1.12749 1.09979 1.36855 1.22303 0.99712 0.84330 0.99378 1.22169 0.90914 0.98714 0.96029 1.62080 1.05725 1.09662 1.47480 1.21745 0.93947 0.94293 0.93973 1.18791 0.91726 0.87807 0.95501 1.20444 1.11060 1.02632 1.18376 0.92022 1.24915 0.94597 0.98339 0.94561 1.69895 1.38149 1.34673 1.07673 0.87135 0.80073 0.85274 0.78509 1.19913 1.20933 1.19129 1.22950 1.01160 1.03956 0.96090 1.22747 1.01437 1.07941 0.91462 1.22916 1.05612 0.86469 0.93249 1.22989 0.83350 1.00822 1.01142 0.80899 0.83168 0.90071 0.92778 0.90617 0.94626 0.94750 0.89492 0.92604 0.92029 0.90598 0.91133 0.91482 0.84382 0.94885 0.92307 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.91 17.66 41.84 0.74 -7.17 16 2 C 0.28 4.76 10.97 -22.47 -0.25 4.52 16 3 C -0.23 -3.19 6.25 -37.95 -0.24 -3.43 16 4 S 0.23 2.08 23.06 -107.50 -2.48 -0.39 16 5 C -0.21 -1.66 10.89 29.07 0.32 -1.35 16 6 C -0.15 -1.45 9.45 -41.23 -0.39 -1.84 16 7 C 0.17 2.35 5.52 -84.67 -0.47 1.89 16 8 N -0.47 -7.57 4.78 -171.69 -0.82 -8.40 16 9 C 0.07 0.98 5.45 -3.77 -0.02 0.96 16 10 C 0.05 0.85 5.58 -3.76 -0.02 0.83 16 11 N -0.52 -10.96 4.65 -234.46 -1.09 -12.05 16 12 C 0.09 1.99 4.72 -3.82 -0.02 1.97 16 13 C 0.06 1.53 1.92 -155.66 -0.30 1.23 16 14 C -0.49 -13.00 7.06 -34.44 -0.24 -13.25 16 15 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 16 C 0.08 2.09 3.20 -17.82 -0.06 2.03 16 17 N -0.87 -23.21 11.10 55.43 0.62 -22.59 16 18 Si 0.86 20.82 28.28 -169.99 -4.81 16.02 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.20 -4.65 9.92 -26.69 -0.26 -4.91 16 23 C -0.20 -4.43 9.96 -26.69 -0.27 -4.69 16 24 C 0.05 1.00 4.14 -3.76 -0.02 0.98 16 25 C 0.04 0.85 3.77 -3.77 -0.01 0.83 16 26 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 27 H 0.15 1.24 7.75 -52.49 -0.41 0.84 16 28 H 0.08 0.91 7.38 -51.93 -0.38 0.52 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.73 7.82 -51.93 -0.41 0.32 16 33 H 0.09 2.21 5.57 -51.93 -0.29 1.92 16 34 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.14 3.48 2.91 -51.93 -0.15 3.32 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.20 6.09 -51.93 -0.32 0.88 16 42 H 0.07 1.52 6.35 -51.93 -0.33 1.19 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -28.57 342.78 -10.55 -39.12 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.63 Total: 4.52 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -2.24 Total: -14.22 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.56 Total: -50.21 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.81 Total: 16.02 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.48 Total: -0.39 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.57 -10.55 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602882262.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.365 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds