Wall clock time and date at job start Tue Mar 31 2020 11:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 S 1.75815 * 125.48275 * 127.53500 * 3 2 1 5 5 C 1.70567 * 91.69641 * 180.20944 * 4 3 2 6 6 C 1.33489 * 111.21404 * 359.80442 * 5 4 3 7 7 C 1.37429 * 125.48082 * 307.39243 * 3 2 1 8 8 N 1.39460 * 123.50773 * 359.97438 * 7 3 2 9 9 C 1.46957 * 110.99933 * 119.73322 * 8 7 3 10 10 C 1.53049 * 109.38711 * 176.81810 * 9 8 7 11 11 N 1.46963 * 109.36098 * 58.38977 * 10 9 8 12 12 C 1.46903 * 110.99739 * 176.81417 * 11 10 9 13 13 C 1.52998 * 109.46547 * 197.57182 * 12 11 10 14 14 C 1.50694 * 115.55414 * 292.64246 * 13 12 11 15 15 H 1.08002 * 120.00459 * 143.52173 * 14 13 12 16 16 C 1.37877 * 120.00054 * 323.52253 * 14 13 12 17 17 N 1.31518 * 120.00047 * 340.04634 * 16 14 13 18 18 Si 1.86802 * 120.00241 * 160.04539 * 16 14 13 19 19 H 1.48504 * 109.46902 * 59.99913 * 18 16 14 20 20 H 1.48499 * 109.47410 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47219 * 300.00369 * 18 16 14 22 22 C 1.53003 * 117.49458 * 146.97484 * 13 12 11 23 23 C 1.53004 * 117.49677 * 78.31950 * 13 12 11 24 24 C 1.46959 * 110.88128 * 300.68111 * 11 10 9 25 25 C 1.46954 * 111.02111 * 355.92074 * 8 7 3 26 26 H 1.07999 * 124.39225 * 179.81366 * 5 4 3 27 27 H 1.07996 * 122.46589 * 179.97438 * 6 5 4 28 28 H 1.09004 * 109.49186 * 56.84014 * 9 8 7 29 29 H 1.09000 * 109.48871 * 296.79840 * 9 8 7 30 30 H 1.08998 * 109.49257 * 178.35684 * 10 9 8 31 31 H 1.09001 * 109.48808 * 298.42735 * 10 9 8 32 32 H 1.08997 * 109.47323 * 317.57330 * 12 11 10 33 33 H 1.09003 * 109.46769 * 77.57594 * 12 11 10 34 34 H 0.97002 * 120.00037 * 185.16136 * 17 16 14 35 35 H 1.08996 * 117.50154 * 359.97438 * 22 13 12 36 36 H 1.09005 * 117.50011 * 145.02390 * 22 13 12 37 37 H 1.09002 * 117.49645 * 214.97496 * 23 13 12 38 38 H 1.08998 * 117.49901 * 359.96390 * 23 13 12 39 39 H 1.08991 * 109.49123 * 179.28656 * 24 11 10 40 40 H 1.09002 * 109.48821 * 299.35338 * 24 11 10 41 41 H 1.09001 * 109.46960 * 63.20140 * 25 8 7 42 42 H 1.08999 * 109.50873 * 303.15207 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5882 0.8733 -1.1353 5 6 5.0060 0.2911 -0.3869 6 6 4.7158 -0.5009 0.6477 7 6 3.3660 -0.6786 0.8891 8 7 2.8663 -1.4690 1.9238 9 6 3.3129 -2.8622 1.7850 10 6 2.8109 -3.6779 2.9787 11 7 1.3445 -3.6014 3.0389 12 6 0.8182 -4.4345 4.1285 13 6 -0.6740 -4.6860 3.9029 14 6 -1.5631 -3.4755 4.0257 15 1 -2.4179 -3.3649 3.3748 16 6 -1.2854 -2.5090 4.9689 17 7 -0.5201 -2.7963 5.9992 18 14 -1.9961 -0.7914 4.7836 19 1 -3.4792 -0.8678 4.7741 20 1 -1.5518 0.0536 5.9210 21 1 -1.5231 -0.1949 3.5087 22 6 -1.2417 -6.0293 4.3655 23 6 -1.0635 -5.7470 2.8716 24 6 0.8979 -2.2083 3.1783 25 6 1.4000 -1.3926 1.9845 26 1 6.0085 0.5322 -0.7083 27 1 5.4792 -0.9690 1.2515 28 1 4.4021 -2.8938 1.7553 29 1 2.9117 -3.2825 0.8628 30 1 3.1163 -4.7178 2.8629 31 1 3.2341 -3.2745 3.8986 32 1 1.3485 -5.3865 4.1466 33 1 0.9605 -3.9211 5.0795 34 1 -0.3853 -2.1404 6.7011 35 1 -0.5521 -6.7340 4.8302 36 1 -2.2585 -6.0376 4.7583 37 1 -1.9631 -5.5696 2.2822 38 1 -0.2567 -6.2654 2.3535 39 1 -0.1912 -2.1767 3.2079 40 1 1.2994 -1.7882 4.1005 41 1 0.9768 -1.7960 1.0646 42 1 1.0942 -0.3528 2.1002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602882262.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:09 Heat of formation + Delta-G solvation = 116.029557 kcal Electronic energy + Delta-G solvation = -25051.781745 eV Core-core repulsion = 21739.105971 eV Total energy + Delta-G solvation = -3312.675773 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51586 -39.36799 -37.69459 -37.56027 -34.99907 -34.38905 -32.05834 -30.70963 -28.94133 -27.77538 -25.93088 -24.54687 -23.90834 -22.85730 -21.81034 -20.94942 -20.81847 -19.83111 -18.14695 -17.64865 -16.84094 -16.70202 -16.19964 -16.10683 -15.85297 -15.57537 -15.54319 -15.04428 -14.82871 -14.58258 -14.44118 -14.21682 -13.90241 -13.67554 -13.60393 -13.37449 -13.10296 -12.94876 -12.71925 -12.52127 -12.30501 -12.22773 -12.03550 -11.96458 -11.85454 -11.71039 -11.14583 -10.93987 -10.64077 -10.49935 -9.99064 -9.70575 -9.01029 -8.79320 -8.17601 -6.12796 -0.48868 0.29193 0.99199 1.24085 1.29548 1.37309 1.39906 1.80237 2.17368 2.27708 2.60725 2.86175 3.01374 3.16512 3.73270 3.81942 3.90534 4.02229 4.20196 4.22956 4.31348 4.36499 4.45818 4.53322 4.62186 4.66607 4.80903 4.86029 4.90364 4.95994 5.00904 5.01826 5.07357 5.15200 5.18902 5.34351 5.39314 5.51729 5.60820 5.73201 5.90428 5.97898 6.35336 6.40960 6.42805 6.51348 6.80014 7.35295 8.79584 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.004724 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.983374 B = 5925.293652 C = 6708.059576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.301 3.699 3 C -0.282 4.282 4 S 0.281 5.719 5 C -0.178 4.178 6 C -0.160 4.160 7 C 0.167 3.833 8 N -0.480 5.480 9 C 0.073 3.927 10 C 0.048 3.952 11 N -0.530 5.530 12 C 0.098 3.902 13 C 0.033 3.967 14 C -0.503 4.503 15 H 0.040 0.960 16 C 0.063 3.937 17 N -0.881 5.881 18 Si 0.898 3.102 19 H -0.273 1.273 20 H -0.276 1.276 21 H -0.278 1.278 22 C -0.199 4.199 23 C -0.182 4.182 24 C 0.055 3.945 25 C 0.064 3.936 26 H 0.219 0.781 27 H 0.174 0.826 28 H 0.126 0.874 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.029 0.971 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.263 0.737 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.008 0.992 41 H 0.043 0.957 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.533 4.702 -12.405 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.011 4.011 3 C -0.405 4.405 4 S 0.546 5.454 5 C -0.317 4.317 6 C -0.192 4.192 7 C 0.050 3.950 8 N -0.195 5.195 9 C -0.052 4.052 10 C -0.081 4.081 11 N -0.255 5.255 12 C -0.030 4.030 13 C 0.033 3.967 14 C -0.540 4.540 15 H 0.058 0.942 16 C -0.140 4.140 17 N -0.518 5.518 18 Si 0.724 3.276 19 H -0.199 1.199 20 H -0.201 1.201 21 H -0.204 1.204 22 C -0.237 4.237 23 C -0.219 4.219 24 C -0.073 4.073 25 C -0.064 4.064 26 H 0.236 0.764 27 H 0.191 0.809 28 H 0.144 0.856 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.026 0.974 41 H 0.061 0.939 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.644 5.707 -13.440 22.141 hybrid contribution -0.593 0.078 1.869 1.962 sum 16.051 5.786 -11.571 20.615 Atomic orbital electron populations 1.81409 1.12822 1.11317 1.10089 1.24536 0.91785 0.92382 0.92419 1.20693 0.88573 1.21151 1.10097 1.82869 0.91954 1.44269 1.26296 1.25646 1.05811 1.00836 0.99412 1.19666 0.93013 1.04763 1.01799 1.18911 0.94034 0.94843 0.87211 1.59064 1.10026 1.11432 1.38976 1.22389 1.02091 0.82999 0.97728 1.22338 0.87990 1.00755 0.96979 1.62054 1.08646 1.08396 1.46355 1.21520 0.93240 0.94944 0.93263 1.18934 0.92535 0.87649 0.97616 1.20520 1.11089 1.04314 1.18051 0.94150 1.25146 0.94828 0.99640 0.94349 1.69958 1.38806 1.35062 1.07943 0.86601 0.79532 0.83448 0.77987 1.19859 1.20140 1.20358 1.22928 1.00849 1.03280 0.96656 1.22715 1.01586 1.06472 0.91135 1.22557 1.03605 0.87781 0.93349 1.22526 0.86174 0.98818 0.98895 0.76423 0.80870 0.85620 0.93181 0.88259 0.95310 0.92987 0.92332 0.92682 0.90167 0.91730 0.91784 0.89458 0.87732 0.97411 0.93866 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -19.52 17.66 19.00 0.34 -19.18 16 2 C 0.30 10.46 10.97 88.33 0.97 11.43 16 3 C -0.28 -7.38 6.25 23.32 0.15 -7.23 16 4 S 0.28 4.17 23.06 -56.49 -1.30 2.87 16 5 C -0.18 -1.76 10.89 66.74 0.73 -1.04 16 6 C -0.16 -2.45 9.45 21.20 0.20 -2.25 16 7 C 0.17 4.15 5.52 37.74 0.21 4.36 16 8 N -0.48 -14.90 4.78 -697.09 -3.33 -18.23 16 9 C 0.07 1.92 5.45 86.31 0.47 2.39 16 10 C 0.05 1.52 5.58 86.31 0.48 2.00 16 11 N -0.53 -22.21 4.65 -895.69 -4.17 -26.38 16 12 C 0.10 4.47 4.72 86.30 0.41 4.88 16 13 C 0.03 1.66 1.92 -52.93 -0.10 1.56 16 14 C -0.50 -27.86 7.06 25.60 0.18 -27.68 16 15 H 0.04 2.34 7.89 -2.91 -0.02 2.32 16 16 C 0.06 3.42 3.20 84.65 0.27 3.69 16 17 N -0.88 -48.54 11.10 21.45 0.24 -48.30 16 18 Si 0.90 44.57 28.28 68.60 1.94 46.51 16 19 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 22 C -0.20 -9.04 9.92 30.62 0.30 -8.74 16 23 C -0.18 -8.03 9.96 30.62 0.30 -7.72 16 24 C 0.06 2.55 4.14 86.31 0.36 2.91 16 25 C 0.06 2.56 3.77 86.31 0.33 2.89 16 26 H 0.22 0.28 8.06 -2.91 -0.02 0.26 16 27 H 0.17 1.87 7.75 -2.91 -0.02 1.85 16 28 H 0.13 2.22 7.38 -2.39 -0.02 2.20 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 30 H 0.10 2.69 8.01 -2.39 -0.02 2.68 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 2.15 7.82 -2.39 -0.02 2.13 16 33 H 0.06 3.04 5.57 -2.39 -0.01 3.03 16 34 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 35 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 36 H 0.06 3.04 8.14 -2.38 -0.02 3.02 16 37 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 39 H 0.11 5.56 2.91 -2.39 -0.01 5.55 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.04 1.85 6.09 -2.39 -0.01 1.84 16 42 H 0.06 2.43 6.35 -2.39 -0.02 2.42 16 Total: -1.00 -67.20 342.78 0.00 -67.20 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.04 Total: 14.05 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 5.25 Total: -18.54 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -6.93 Total: -112.10 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.94 Total: 46.51 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.30 Total: 2.87 kcal Total: -67.20 0.00 -67.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602882262.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.233 kcal (2) G-P(sol) polarization free energy of solvation -67.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds