Wall clock time and date at job start Tue Mar 31 2020 11:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35348 * 126.75241 * 124.71667 * 10 9 7 12 12 N 1.35310 * 106.17503 * 179.84708 * 11 10 9 13 13 C 1.46503 * 125.86801 * 180.10838 * 12 11 10 14 14 C 1.53007 * 109.46672 * 125.32835 * 13 12 11 15 15 C 1.53004 * 109.46798 * 180.02562 * 14 13 12 16 16 S 1.81402 * 109.46675 * 180.02562 * 15 14 13 17 17 C 1.81402 * 102.99570 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47028 * 179.97438 * 17 16 15 19 19 C 1.38231 * 120.00211 * 269.72853 * 18 17 16 20 20 C 1.38233 * 120.00102 * 179.76539 * 19 18 17 21 21 C 1.38233 * 119.99814 * 0.50764 * 20 19 18 22 22 C 1.38228 * 120.00036 * 359.74353 * 21 20 19 23 23 C 1.38229 * 120.00227 * 0.02562 * 22 21 20 24 24 N 1.28712 * 108.26299 * 0.41850 * 12 11 10 25 25 N 1.28632 * 110.17939 * 359.72812 * 24 12 11 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.08000 * 126.91051 * 359.97438 * 11 10 9 30 30 H 1.08989 * 109.47681 * 245.32765 * 13 12 11 31 31 H 1.08998 * 109.46818 * 5.33334 * 13 12 11 32 32 H 1.08998 * 109.46830 * 300.00236 * 14 13 12 33 33 H 1.08992 * 109.47198 * 60.00245 * 14 13 12 34 34 H 1.09000 * 109.46623 * 299.99619 * 15 14 13 35 35 H 1.08992 * 109.47554 * 59.99841 * 15 14 13 36 36 H 1.08995 * 109.47294 * 299.99819 * 17 16 15 37 37 H 1.09003 * 109.47492 * 59.99874 * 17 16 15 38 38 H 1.08009 * 119.99761 * 359.97438 * 19 18 17 39 39 H 1.08001 * 119.99695 * 180.22875 * 20 19 18 40 40 H 1.08004 * 119.99706 * 179.72701 * 21 20 19 41 41 H 1.08010 * 120.00151 * 179.97438 * 22 21 20 42 42 H 1.08005 * 120.00613 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.2870 -4.6655 0.8765 12 7 3.3139 -5.4525 0.4802 13 6 3.7544 -6.6850 1.1383 14 6 3.7703 -7.8283 0.1216 15 6 4.2298 -9.1157 0.8091 16 16 4.2493 -10.4710 -0.3965 17 6 4.8107 -11.8862 0.5898 18 6 4.8798 -13.1118 -0.2844 19 6 3.7773 -13.9366 -0.4067 20 6 3.8392 -15.0582 -1.2123 21 6 5.0069 -15.3607 -1.8874 22 6 6.1111 -14.5388 -1.7610 23 6 6.0477 -13.4146 -0.9591 24 7 3.8413 -4.9286 -0.5706 25 7 3.2179 -3.8494 -0.8890 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 1.6411 -4.8218 1.7279 30 1 4.7571 -6.5433 1.5414 31 1 3.0680 -6.9292 1.9490 32 1 2.7675 -7.9700 -0.2815 33 1 4.4566 -7.5840 -0.6891 34 1 5.2325 -8.9741 1.2124 35 1 3.5432 -9.3597 1.6196 36 1 5.7987 -11.6750 0.9987 37 1 4.1096 -12.0614 1.4058 38 1 2.8664 -13.7028 0.1246 39 1 2.9765 -15.7005 -1.3108 40 1 5.0566 -16.2395 -2.5133 41 1 7.0236 -14.7754 -2.2881 42 1 6.9106 -12.7726 -0.8600 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603219450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:11 Heat of formation + Delta-G solvation = 105.666453 kcal Electronic energy + Delta-G solvation = -21462.604847 eV Core-core repulsion = 18149.479696 eV Total energy + Delta-G solvation = -3313.125151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.50753 -39.63246 -36.06477 -33.48240 -33.32352 -32.28332 -31.33723 -31.02027 -27.93536 -27.49808 -26.74759 -23.48384 -23.02766 -22.83745 -21.72461 -21.14327 -19.95283 -17.45490 -17.00795 -16.39669 -16.24451 -15.99824 -15.74043 -15.63729 -15.36453 -14.60287 -14.50215 -14.08167 -13.90884 -13.76397 -13.53095 -13.13235 -12.98927 -12.69720 -12.46574 -12.16156 -12.09839 -11.62228 -11.52946 -11.48252 -11.33702 -10.96611 -10.71234 -10.63271 -10.42890 -10.05908 -9.69267 -9.43449 -9.35906 -9.26930 -9.11389 -8.42557 -8.12175 -8.04585 -5.97913 -3.98300 0.53911 0.97264 1.48649 2.17090 2.24537 2.78754 3.36314 3.41546 3.42658 3.46912 3.54245 4.13658 4.27596 4.32918 4.45265 4.52668 4.57029 4.61693 4.69061 4.69203 4.74196 4.96348 5.00180 5.06753 5.08863 5.17635 5.20516 5.39154 5.51670 5.52794 5.59394 5.78556 5.89600 6.00517 6.07883 6.08881 6.10173 6.32479 6.53504 7.13685 7.18541 7.54313 7.63880 8.00198 8.38729 9.05508 9.31674 9.64556 11.13243 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.045186 B = 0.001613 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.513702 B =17359.498761 C =17456.216261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.503 4.503 8 H 0.059 0.941 9 C 0.091 3.909 10 C 0.034 3.966 11 C -0.082 4.082 12 N -0.306 5.306 13 C 0.129 3.871 14 C -0.117 4.117 15 C -0.088 4.088 16 S -0.238 6.238 17 C -0.050 4.050 18 C -0.074 4.074 19 C -0.101 4.101 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.101 4.101 24 N -0.108 5.108 25 N -0.260 5.260 26 H 0.260 0.740 27 H 0.036 0.964 28 H 0.039 0.961 29 H 0.181 0.819 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.341 -32.806 4.432 34.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.053 3.947 10 C -0.103 4.103 11 C -0.231 4.231 12 N -0.102 5.102 13 C 0.005 3.995 14 C -0.156 4.156 15 C -0.237 4.237 16 S -0.007 6.007 17 C -0.197 4.197 18 C -0.076 4.076 19 C -0.121 4.121 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.138 4.138 23 C -0.121 4.121 24 N -0.086 5.086 25 N -0.128 5.128 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.199 0.801 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.032 -32.756 2.323 34.337 hybrid contribution -0.074 0.841 2.285 2.436 sum 9.958 -31.915 4.609 33.749 Atomic orbital electron populations 1.69960 1.05967 1.26631 1.51236 1.24976 0.94878 0.99233 0.95353 0.86457 0.80212 0.83444 0.77473 1.19711 1.20930 1.21119 1.21099 0.93306 0.89775 1.49981 0.92225 1.17737 0.90900 0.87578 0.98522 1.23039 0.97786 0.97738 0.91718 1.23373 0.97644 0.96170 1.05884 1.47125 1.22904 1.19233 1.20901 1.21814 1.02364 0.80444 0.94889 1.21565 1.04383 0.90862 0.98801 1.23296 1.04952 0.95708 0.99771 1.87421 1.89157 1.04040 1.20132 1.22304 1.04782 0.93614 0.99018 1.19203 0.94674 0.94820 0.98879 1.21066 0.97763 0.94566 0.98698 1.21162 0.98166 0.97361 0.97166 1.21227 0.93301 0.99634 0.99308 1.21163 0.98835 0.94994 0.98854 1.21071 0.97496 0.97130 0.96370 1.78176 1.21633 1.06959 1.01867 1.75080 1.06847 1.07157 1.23672 0.92990 0.94540 0.94268 0.80142 0.88857 0.88064 0.89997 0.88940 0.89484 0.89603 0.89097 0.89124 0.85783 0.85795 0.85937 0.85789 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.50 -14.66 9.09 -34.44 -0.31 -14.97 16 8 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 9 C 0.09 2.41 5.55 -29.03 -0.16 2.25 16 10 C 0.03 0.80 6.44 -82.78 -0.53 0.26 16 11 C -0.08 -1.49 11.49 -17.05 -0.20 -1.69 16 12 N -0.31 -5.02 3.44 -61.26 -0.21 -5.23 16 13 C 0.13 1.29 6.46 -4.04 -0.03 1.27 16 14 C -0.12 -1.12 5.35 -26.73 -0.14 -1.27 16 15 C -0.09 -0.62 5.94 37.16 0.22 -0.40 16 16 S -0.24 -2.14 21.72 -107.50 -2.33 -4.48 16 17 C -0.05 -0.32 6.07 36.01 0.22 -0.11 16 18 C -0.07 -0.56 5.14 -104.62 -0.54 -1.09 16 19 C -0.10 -0.72 9.70 -39.59 -0.38 -1.11 16 20 C -0.12 -0.79 10.05 -39.59 -0.40 -1.19 16 21 C -0.12 -0.73 10.05 -39.59 -0.40 -1.13 16 22 C -0.12 -0.79 10.05 -39.59 -0.40 -1.19 16 23 C -0.10 -0.73 9.70 -39.58 -0.38 -1.11 16 24 N -0.11 -2.21 12.91 60.35 0.78 -1.43 16 25 N -0.26 -6.30 12.40 33.29 0.41 -5.89 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.04 0.95 8.12 -51.93 -0.42 0.53 16 28 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.18 2.56 8.06 -52.49 -0.42 2.14 16 30 H 0.09 0.80 8.14 -51.94 -0.42 0.38 16 31 H 0.10 0.71 8.07 -51.93 -0.42 0.30 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.08 8.12 -51.93 -0.42 0.65 16 34 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 37 H 0.09 0.48 8.08 -51.92 -0.42 0.06 16 38 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.12 0.53 8.06 -52.48 -0.42 0.10 16 41 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 42 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -34.93 376.73 -9.78 -44.72 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -6.29 Total: -4.62 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -3.53 Total: -19.93 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 1.72 Total: -38.59 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: -2.14 SS G_CDS: -2.33 Total: -4.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.93 -9.78 -44.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603219450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.385 kcal (2) G-P(sol) polarization free energy of solvation -34.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds