Wall clock time and date at job start Tue Mar 31 2020 11:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35348 * 126.75241 * 124.71667 * 10 9 7 12 12 N 1.35310 * 106.17503 * 179.84708 * 11 10 9 13 13 C 1.46503 * 125.86801 * 180.10838 * 12 11 10 14 14 C 1.53007 * 109.46672 * 125.32835 * 13 12 11 15 15 C 1.53004 * 109.46798 * 180.02562 * 14 13 12 16 16 S 1.81402 * 109.46675 * 180.02562 * 15 14 13 17 17 C 1.81402 * 102.99570 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47028 * 179.97438 * 17 16 15 19 19 C 1.38231 * 120.00211 * 269.72853 * 18 17 16 20 20 C 1.38233 * 120.00102 * 179.76539 * 19 18 17 21 21 C 1.38233 * 119.99814 * 0.50764 * 20 19 18 22 22 C 1.38228 * 120.00036 * 359.74353 * 21 20 19 23 23 C 1.38229 * 120.00227 * 0.02562 * 22 21 20 24 24 N 1.28712 * 108.26299 * 0.41850 * 12 11 10 25 25 N 1.28632 * 110.17939 * 359.72812 * 24 12 11 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.08000 * 126.91051 * 359.97438 * 11 10 9 30 30 H 1.08989 * 109.47681 * 245.32765 * 13 12 11 31 31 H 1.08998 * 109.46818 * 5.33334 * 13 12 11 32 32 H 1.08998 * 109.46830 * 300.00236 * 14 13 12 33 33 H 1.08992 * 109.47198 * 60.00245 * 14 13 12 34 34 H 1.09000 * 109.46623 * 299.99619 * 15 14 13 35 35 H 1.08992 * 109.47554 * 59.99841 * 15 14 13 36 36 H 1.08995 * 109.47294 * 299.99819 * 17 16 15 37 37 H 1.09003 * 109.47492 * 59.99874 * 17 16 15 38 38 H 1.08009 * 119.99761 * 359.97438 * 19 18 17 39 39 H 1.08001 * 119.99695 * 180.22875 * 20 19 18 40 40 H 1.08004 * 119.99706 * 179.72701 * 21 20 19 41 41 H 1.08010 * 120.00151 * 179.97438 * 22 21 20 42 42 H 1.08005 * 120.00613 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.2870 -4.6655 0.8765 12 7 3.3139 -5.4525 0.4802 13 6 3.7544 -6.6850 1.1383 14 6 3.7703 -7.8283 0.1216 15 6 4.2298 -9.1157 0.8091 16 16 4.2493 -10.4710 -0.3965 17 6 4.8107 -11.8862 0.5898 18 6 4.8798 -13.1118 -0.2844 19 6 3.7773 -13.9366 -0.4067 20 6 3.8392 -15.0582 -1.2123 21 6 5.0069 -15.3607 -1.8874 22 6 6.1111 -14.5388 -1.7610 23 6 6.0477 -13.4146 -0.9591 24 7 3.8413 -4.9286 -0.5706 25 7 3.2179 -3.8494 -0.8890 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 1.6411 -4.8218 1.7279 30 1 4.7571 -6.5433 1.5414 31 1 3.0680 -6.9292 1.9490 32 1 2.7675 -7.9700 -0.2815 33 1 4.4566 -7.5840 -0.6891 34 1 5.2325 -8.9741 1.2124 35 1 3.5432 -9.3597 1.6196 36 1 5.7987 -11.6750 0.9987 37 1 4.1096 -12.0614 1.4058 38 1 2.8664 -13.7028 0.1246 39 1 2.9765 -15.7005 -1.3108 40 1 5.0566 -16.2395 -2.5133 41 1 7.0236 -14.7754 -2.2881 42 1 6.9106 -12.7726 -0.8600 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603219450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:10 Heat of formation + Delta-G solvation = 86.136286 kcal Electronic energy + Delta-G solvation = -21463.451739 eV Core-core repulsion = 18149.479696 eV Total energy + Delta-G solvation = -3313.972043 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.03104 -40.09693 -37.11780 -35.44669 -33.79503 -33.61201 -32.80415 -31.80695 -29.48960 -28.36188 -27.70533 -25.47195 -23.81996 -23.50327 -22.60708 -22.25112 -21.38976 -18.60048 -18.19512 -17.76537 -17.29537 -16.94993 -16.56726 -16.43384 -16.09986 -16.09217 -15.62586 -15.22730 -14.66647 -14.44751 -14.32354 -14.23581 -13.98137 -13.79126 -13.60553 -13.43599 -13.21431 -12.96068 -12.68877 -12.62390 -12.53260 -12.11920 -12.00540 -11.91968 -11.82793 -11.64300 -11.36069 -11.03088 -10.80233 -10.57967 -9.85095 -9.84912 -9.61894 -8.70815 -8.18674 -6.27260 0.00459 0.48275 0.75517 0.97573 1.39924 1.41680 1.54569 1.60679 1.67410 1.77998 2.44881 2.92701 3.14113 3.52452 3.64648 3.70294 3.77058 3.83738 3.95954 4.11136 4.13425 4.25253 4.27488 4.29596 4.32738 4.49515 4.51127 4.54376 4.61795 4.68779 4.72348 4.90762 5.06187 5.06740 5.13480 5.31480 5.45800 5.53430 5.55203 5.60544 5.60644 5.77364 5.86486 6.07577 6.23187 6.81327 7.39507 7.72915 8.92405 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.045186 B = 0.001613 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.513702 B =17359.498761 C =17456.216261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.524 4.524 8 H 0.044 0.956 9 C 0.102 3.898 10 C -0.012 4.012 11 C -0.049 4.049 12 N -0.286 5.286 13 C 0.117 3.883 14 C -0.109 4.109 15 C -0.069 4.069 16 S -0.304 6.304 17 C -0.032 4.032 18 C -0.089 4.089 19 C -0.114 4.114 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.131 4.131 23 C -0.115 4.115 24 N -0.121 5.121 25 N -0.312 5.312 26 H 0.266 0.734 27 H 0.036 0.964 28 H 0.006 0.994 29 H 0.227 0.773 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.079 -34.211 6.630 36.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.563 4.563 8 H 0.062 0.938 9 C 0.063 3.937 10 C -0.150 4.150 11 C -0.199 4.199 12 N -0.082 5.082 13 C -0.004 4.004 14 C -0.148 4.148 15 C -0.218 4.218 16 S -0.075 6.075 17 C -0.179 4.179 18 C -0.090 4.090 19 C -0.134 4.134 20 C -0.149 4.149 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.135 4.135 24 N -0.099 5.099 25 N -0.178 5.178 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.024 0.976 29 H 0.244 0.756 30 H 0.135 0.865 31 H 0.164 0.836 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.795 -34.196 4.521 36.143 hybrid contribution -0.285 1.093 1.618 1.973 sum 10.510 -33.103 6.139 35.270 Atomic orbital electron populations 1.70048 1.07244 1.27834 1.51554 1.25793 0.95796 1.02672 0.94713 0.85435 0.78566 0.79125 0.78111 1.19922 1.20282 1.19499 1.21328 0.92782 0.91618 1.50545 0.93794 1.17390 0.91130 0.88381 0.96805 1.22705 0.98664 0.99229 0.94414 1.23794 0.97120 0.93951 1.05050 1.47591 1.21307 1.19963 1.19308 1.22469 1.04890 0.77621 0.95416 1.21423 1.02926 0.92184 0.98293 1.23210 1.06601 0.92965 0.98996 1.87693 1.89661 1.06928 1.23170 1.22281 1.05632 0.91600 0.98401 1.19400 0.94900 0.95316 0.99414 1.21290 0.98103 0.94910 0.99098 1.21457 0.98929 0.97511 0.96961 1.21534 0.93151 1.00221 0.99363 1.21450 0.99687 0.94906 0.98845 1.21287 0.97873 0.97636 0.96698 1.78047 1.21907 1.06424 1.03565 1.74984 1.08132 1.09176 1.25512 0.92502 0.94596 0.97562 0.75608 0.86493 0.83622 0.91514 0.91582 0.87662 0.87035 0.87890 0.87689 0.84992 0.84208 0.84112 0.84275 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.96 45.98 29.54 68.60 2.03 48.01 16 4 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.52 -31.37 9.09 25.60 0.23 -31.14 16 8 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.10 5.55 5.55 29.10 0.16 5.71 16 10 C -0.01 -0.56 6.44 41.60 0.27 -0.29 16 11 C -0.05 -1.67 11.49 83.49 0.96 -0.71 16 12 N -0.29 -8.77 3.44 -347.73 -1.20 -9.97 16 13 C 0.12 1.89 6.46 86.38 0.56 2.45 16 14 C -0.11 -1.87 5.35 30.60 0.16 -1.70 16 15 C -0.07 -0.76 5.94 71.98 0.43 -0.33 16 16 S -0.30 -5.15 21.72 -56.49 -1.23 -6.37 16 17 C -0.03 -0.36 6.07 71.24 0.43 0.07 16 18 C -0.09 -1.24 5.14 -19.86 -0.10 -1.34 16 19 C -0.11 -1.53 9.70 22.27 0.22 -1.32 16 20 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16 21 C -0.12 -1.43 10.05 22.27 0.22 -1.21 16 22 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 23 C -0.12 -1.58 9.70 22.27 0.22 -1.36 16 24 N -0.12 -4.93 12.91 37.02 0.48 -4.45 16 25 N -0.31 -15.47 12.40 -48.60 -0.60 -16.07 16 26 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 27 H 0.04 1.91 8.12 -2.38 -0.02 1.89 16 28 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.23 5.42 8.06 -2.91 -0.02 5.39 16 30 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.15 1.18 8.07 -2.39 -0.02 1.16 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.10 0.88 8.09 -2.39 -0.02 0.86 16 37 H 0.10 0.85 8.08 -2.39 -0.02 0.84 16 38 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 40 H 0.14 1.00 8.06 -2.91 -0.02 0.97 16 41 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -79.67 376.73 5.42 -74.24 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 0.99 Total: 3.19 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 4.67 Total: -32.97 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -1.04 Total: -86.09 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -1.23 Total: -6.37 kcal Total: -79.67 5.42 -74.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603219450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.380 kcal (2) G-P(sol) polarization free energy of solvation -79.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds