Wall clock time and date at job start Tue Mar 31 2020 11:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35975 * 116.99932 * 2 1 4 4 C 1.39285 * 119.90848 * 359.97438 * 3 2 1 5 5 C 1.37718 * 120.69632 * 179.97438 * 4 3 2 6 6 C 1.39013 * 120.07098 * 0.03064 * 5 4 3 7 7 O 1.34827 * 133.08384 * 180.02562 * 6 5 4 8 8 C 1.34923 * 110.86015 * 179.97438 * 7 6 5 9 9 C 1.46971 * 125.13539 * 180.26352 * 8 7 6 10 10 O 1.21659 * 120.00639 * 172.24412 * 9 8 7 11 11 N 1.34778 * 120.00090 * 352.25085 * 9 8 7 12 12 C 1.46501 * 119.99582 * 3.45284 * 11 9 8 13 13 C 1.46498 * 120.00250 * 183.45872 * 11 9 8 14 14 H 1.08997 * 109.47325 * 359.97438 * 13 11 9 15 15 C 1.52993 * 109.47065 * 119.99934 * 13 11 9 16 16 C 1.50711 * 109.46857 * 239.99677 * 13 11 9 17 17 H 1.08002 * 119.99696 * 0.02562 * 16 13 11 18 18 C 1.37871 * 119.99594 * 180.02562 * 16 13 11 19 19 N 1.31518 * 120.00556 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99703 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47417 * 59.99621 * 20 18 16 22 22 H 1.48509 * 109.47280 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47088 * 299.99653 * 20 18 16 24 24 C 1.35822 * 109.73766 * 0.02562 * 8 7 6 25 25 C 1.50693 * 126.95751 * 179.97438 * 24 8 7 26 26 C 1.40686 * 119.34944 * 359.97438 * 6 5 4 27 27 C 1.38047 * 119.90555 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46664 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46792 * 300.00214 * 1 2 3 30 30 H 1.08997 * 109.46676 * 60.00022 * 1 2 3 31 31 H 1.08003 * 119.65076 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.96131 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.46954 * 83.91467 * 12 11 9 34 34 H 1.08999 * 109.47024 * 203.90820 * 12 11 9 35 35 H 1.08997 * 109.47378 * 323.91304 * 12 11 9 36 36 H 1.09002 * 109.47380 * 179.97438 * 15 13 11 37 37 H 1.09001 * 109.47453 * 299.99492 * 15 13 11 38 38 H 1.09003 * 109.47576 * 60.00004 * 15 13 11 39 39 H 0.96993 * 120.00318 * 180.02562 * 19 18 16 40 40 H 1.09008 * 109.47019 * 90.02547 * 25 24 8 41 41 H 1.09003 * 109.47159 * 210.02097 * 25 24 8 42 42 H 1.08998 * 109.47832 * 330.02357 * 25 24 8 43 43 H 1.07997 * 120.22583 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2859 2.3785 -0.0005 5 6 1.8941 3.6140 0.0000 6 6 3.2811 3.7076 0.0004 7 8 4.1337 4.7521 0.0014 8 6 5.4142 4.3270 0.0020 9 6 6.5957 5.2012 0.0086 10 8 7.7054 4.7233 0.1508 11 7 6.4497 6.5325 -0.1427 12 6 5.1094 7.1163 -0.2378 13 6 7.6314 7.3957 -0.2121 14 1 8.5315 6.7874 -0.1238 15 6 7.6445 8.1355 -1.5512 16 6 7.5893 8.3963 0.9141 17 1 6.7650 8.3895 1.6120 18 6 8.6030 9.3203 1.0535 19 7 9.6070 9.3283 0.2040 20 14 8.5513 10.5601 2.4498 21 1 8.5394 9.8417 3.7495 22 1 9.7490 11.4353 2.3794 23 1 7.3246 11.3886 2.3309 24 6 5.4468 2.9692 0.0008 25 6 6.6723 2.0923 0.0005 26 6 4.0516 2.5305 0.0009 27 6 3.4250 1.2815 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 0.2078 2.3136 -0.0005 32 1 1.2929 4.5112 0.0000 33 1 4.7102 7.2747 0.7640 34 1 5.1651 8.0705 -0.7618 35 1 4.4558 6.4381 -0.7863 36 1 8.5234 8.7781 -1.6028 37 1 7.6750 7.4118 -2.3658 38 1 6.7444 8.7439 -1.6392 39 1 10.3204 9.9781 0.3022 40 1 6.9672 1.8796 1.0281 41 1 6.4502 1.1577 -0.5146 42 1 7.4860 2.6052 -0.5123 43 1 4.0153 0.3772 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609143192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:35 Heat of formation + Delta-G solvation = -35.122321 kcal Electronic energy + Delta-G solvation = -26416.923935 eV Core-core repulsion = 22622.648103 eV Total energy + Delta-G solvation = -3794.275833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.45600 -39.89366 -38.88229 -36.61027 -35.62965 -33.69747 -32.87282 -30.71153 -30.06096 -29.04921 -27.62060 -27.17881 -26.08304 -25.24439 -24.17367 -22.44679 -21.38188 -20.06274 -19.13841 -18.26585 -17.23084 -16.94285 -16.50142 -16.25317 -15.89774 -15.82671 -15.50090 -14.62680 -14.31805 -14.22829 -14.05567 -13.61641 -13.21933 -13.02657 -13.00649 -12.74453 -12.61800 -12.56029 -12.38301 -12.30792 -11.75943 -11.57754 -11.31775 -11.08287 -11.05231 -10.88532 -10.84383 -10.72307 -10.30756 -10.19402 -9.93078 -9.36992 -9.20577 -8.46233 -8.33918 -8.06910 -7.64511 -6.09857 -4.18052 0.56084 1.25289 1.94819 2.63926 2.97479 3.27780 3.32643 3.34812 3.50130 3.67411 3.78458 4.37126 4.46006 4.50851 4.63548 4.82502 4.83026 4.88729 5.01880 5.13007 5.17716 5.21809 5.30575 5.56810 5.70999 5.81192 5.89096 5.96768 6.00245 6.06529 6.17130 6.21022 6.23915 6.38477 6.53704 6.72726 6.77585 6.94425 7.01118 7.16721 7.34076 7.44028 7.66802 7.95686 8.12155 8.38331 8.69519 8.89057 9.48180 10.95525 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026111 B = 0.002949 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.074009 B = 9492.253585 C = 9958.291693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.103 3.897 4 C -0.173 4.173 5 C -0.068 4.068 6 C 0.027 3.973 7 O -0.172 6.172 8 C 0.000 4.000 9 C 0.579 3.421 10 O -0.522 6.522 11 N -0.575 5.575 12 C 0.082 3.918 13 C 0.257 3.743 14 H 0.067 0.933 15 C -0.148 4.148 16 C -0.527 4.527 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.888 5.888 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.109 4.109 25 C -0.086 4.086 26 C -0.094 4.094 27 C -0.102 4.102 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.013 0.987 38 H 0.032 0.968 39 H 0.265 0.735 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.035 -14.448 -2.364 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.058 3.942 4 C -0.191 4.191 5 C -0.087 4.087 6 C -0.021 4.021 7 O -0.074 6.074 8 C -0.050 4.050 9 C 0.364 3.636 10 O -0.402 6.402 11 N -0.304 5.304 12 C -0.061 4.061 13 C 0.158 3.842 14 H 0.085 0.915 15 C -0.207 4.207 16 C -0.566 4.566 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.728 3.272 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.112 4.112 25 C -0.142 4.142 26 C -0.095 4.095 27 C -0.120 4.120 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.032 0.968 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.248 -14.432 -2.339 22.610 hybrid contribution -0.531 0.865 0.803 1.294 sum -17.779 -13.567 -1.536 22.417 Atomic orbital electron populations 1.23053 0.78463 1.03932 1.01331 1.86082 1.21240 1.26448 1.89330 1.18604 0.91746 0.84239 0.99578 1.21000 1.00072 0.91015 1.07047 1.19691 0.89068 0.98227 1.01670 1.19762 0.92016 0.85583 1.04722 1.84425 1.14474 1.32308 1.76200 1.22434 0.82503 0.93755 1.06292 1.16821 0.85346 0.82195 0.79256 1.90810 1.23318 1.74380 1.51666 1.48266 1.09484 1.05316 1.67373 1.21803 0.83245 0.99510 1.01563 1.19084 0.82613 0.88399 0.94107 0.91550 1.22119 1.02887 0.99844 0.95809 1.21256 1.08020 1.15275 1.12009 0.92200 1.24880 0.95032 0.97415 0.96354 1.69859 1.10383 1.36269 1.36061 0.86524 0.77442 0.80833 0.82415 1.20200 1.21128 1.20204 1.21247 0.93669 0.92353 1.03920 1.20345 0.93568 0.97351 1.02986 1.19482 0.92611 0.93140 1.04279 1.19597 0.91143 0.96599 1.04698 0.88273 0.92635 0.92647 0.84336 0.84484 0.93034 0.90224 0.91548 0.88506 0.96783 0.94916 0.92543 0.90688 0.91796 0.89163 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.18 10.49 -19.66 -0.21 -3.39 16 3 C 0.10 1.16 6.68 -39.26 -0.26 0.90 16 4 C -0.17 -1.69 9.01 -39.38 -0.35 -2.04 16 5 C -0.07 -0.76 10.05 -39.48 -0.40 -1.16 16 6 C 0.03 0.39 7.40 -38.37 -0.28 0.11 16 7 O -0.17 -2.86 7.14 2.52 0.02 -2.84 16 8 C 0.00 0.00 6.72 -36.91 -0.25 -0.24 16 9 C 0.58 12.60 7.64 -12.72 -0.10 12.51 16 10 O -0.52 -12.62 14.06 5.23 0.07 -12.54 16 11 N -0.58 -12.74 2.75 -176.70 -0.49 -13.23 16 12 C 0.08 1.50 8.79 59.85 0.53 2.02 16 13 C 0.26 6.56 2.63 -69.08 -0.18 6.38 16 14 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16 15 C -0.15 -3.51 8.96 37.15 0.33 -3.18 16 16 C -0.53 -14.26 8.37 -34.44 -0.29 -14.54 16 17 H 0.06 1.61 7.65 -52.49 -0.40 1.21 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 19 N -0.89 -24.86 11.32 55.43 0.63 -24.23 16 20 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C -0.11 -1.79 6.39 -102.28 -0.65 -2.44 16 25 C -0.09 -1.26 9.73 36.00 0.35 -0.91 16 26 C -0.09 -1.39 6.36 -105.20 -0.67 -2.06 16 27 C -0.10 -1.28 10.04 -39.09 -0.39 -1.68 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.26 7.65 -51.93 -0.40 -0.13 16 30 H 0.05 0.26 7.65 -51.93 -0.40 -0.14 16 31 H 0.14 0.91 6.26 -52.48 -0.33 0.58 16 32 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.43 6.44 -51.93 -0.33 1.09 16 35 H 0.07 1.08 5.40 -51.93 -0.28 0.80 16 36 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.03 0.71 6.67 -51.93 -0.35 0.37 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.48 6.57 -51.93 -0.34 1.14 16 43 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -31.09 352.92 -6.99 -38.08 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.60 Total: 0.32 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.72 Total: -3.50 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.14 Total: -37.46 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.11 Total: -18.77 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.09 -6.99 -38.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609143192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.957 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds