Wall clock time and date at job start Tue Mar 31 2020 11:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35973 * 117.00300 * 2 1 4 4 C 1.39284 * 119.90687 * 0.02562 * 3 2 1 5 5 C 1.37723 * 120.70117 * 179.97438 * 4 3 2 6 6 C 1.39011 * 120.06763 * 0.02562 * 5 4 3 7 7 O 1.34831 * 133.08438 * 180.02562 * 6 5 4 8 8 C 1.34928 * 110.85534 * 180.02562 * 7 6 5 9 9 C 1.46982 * 125.12485 * 180.02562 * 8 7 6 10 10 O 1.21660 * 119.99672 * 172.66186 * 9 8 7 11 11 N 1.34770 * 120.00224 * 352.65641 * 9 8 7 12 12 C 1.46498 * 119.99993 * 3.34186 * 11 9 8 13 13 C 1.46496 * 120.00232 * 183.34156 * 11 9 8 14 14 H 1.09000 * 109.47158 * 359.97438 * 13 11 9 15 15 C 1.52998 * 109.47272 * 240.00068 * 13 11 9 16 16 C 1.50698 * 109.47441 * 120.00022 * 13 11 9 17 17 H 1.08002 * 120.00098 * 0.02562 * 16 13 11 18 18 C 1.37874 * 120.00620 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99726 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 120.00493 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47075 * 90.00373 * 20 18 16 22 22 H 1.48501 * 109.47357 * 210.00006 * 20 18 16 23 23 H 1.48500 * 109.47232 * 330.00186 * 20 18 16 24 24 C 1.35810 * 109.74254 * 359.97438 * 8 7 6 25 25 C 1.50704 * 126.95766 * 180.26302 * 24 8 7 26 26 C 1.40687 * 119.34748 * 0.02562 * 6 5 4 27 27 C 1.38049 * 119.91171 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46895 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46485 * 299.99035 * 1 2 3 30 30 H 1.08994 * 109.47337 * 59.99549 * 1 2 3 31 31 H 1.08008 * 119.64987 * 0.02562 * 4 3 2 32 32 H 1.07992 * 119.96545 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47127 * 83.90847 * 12 11 9 34 34 H 1.09002 * 109.47258 * 203.90958 * 12 11 9 35 35 H 1.09002 * 109.47635 * 323.90778 * 12 11 9 36 36 H 1.09005 * 109.47446 * 60.00047 * 15 13 11 37 37 H 1.08999 * 109.47189 * 179.97438 * 15 13 11 38 38 H 1.08993 * 109.47475 * 300.00033 * 15 13 11 39 39 H 0.96998 * 120.00394 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.46788 * 269.69176 * 25 24 8 41 41 H 1.09000 * 109.46743 * 29.68898 * 25 24 8 42 42 H 1.08992 * 109.46807 * 149.69283 * 25 24 8 43 43 H 1.08000 * 120.22256 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2859 2.3784 0.0005 5 6 1.8941 3.6141 0.0011 6 6 3.2811 3.7076 0.0005 7 8 4.1338 4.7521 0.0013 8 6 5.4143 4.3269 -0.0003 9 6 6.5957 5.2013 0.0005 10 8 7.7064 4.7229 0.1335 11 7 6.4487 6.5329 -0.1462 12 6 5.1078 7.1166 -0.2330 13 6 7.6297 7.3967 -0.2189 14 1 8.5304 6.7883 -0.1368 15 6 7.5924 8.4091 0.9276 16 6 7.6360 8.1292 -1.5359 17 1 6.8397 7.9678 -2.2474 18 6 8.6583 9.0054 -1.8325 19 7 9.6283 9.2016 -0.9663 20 14 8.6666 9.9128 -3.4652 21 1 7.9397 11.1997 -3.3200 22 1 10.0684 10.1799 -3.8761 23 1 7.9982 9.0805 -4.4975 24 6 5.4468 2.9692 -0.0016 25 6 6.6724 2.0922 0.0019 26 6 4.0516 2.5305 -0.0011 27 6 3.4250 1.2815 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2078 2.3136 0.0014 32 1 1.2930 4.5112 0.0019 33 1 4.7135 7.2720 0.7713 34 1 5.1606 8.0723 -0.7545 35 1 4.4516 6.4399 -0.7803 36 1 7.5879 7.8793 1.8802 37 1 8.4714 9.0515 0.8737 38 1 6.6918 9.0175 0.8460 39 1 10.3478 9.8178 -1.1751 40 1 6.9683 1.8774 -1.0249 41 1 7.4855 2.6063 0.5144 42 1 6.4497 1.1588 0.5187 43 1 4.0153 0.3771 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609143193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:38 Heat of formation + Delta-G solvation = -35.882234 kcal Electronic energy + Delta-G solvation = -26427.330091 eV Core-core repulsion = 22633.021306 eV Total energy + Delta-G solvation = -3794.308785 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.44987 -39.89040 -38.88440 -36.60662 -35.62890 -33.68777 -32.87948 -30.70535 -30.06274 -29.04663 -27.61729 -27.17722 -26.04446 -25.25997 -24.16999 -22.44055 -21.38819 -20.06370 -19.15765 -18.26635 -17.22405 -16.94789 -16.50258 -16.23757 -15.90129 -15.79848 -15.51441 -14.63375 -14.31461 -14.24730 -14.03474 -13.60994 -13.20351 -13.06709 -12.96474 -12.71241 -12.63147 -12.48331 -12.35328 -12.31629 -11.76962 -11.63298 -11.31834 -11.10815 -11.03829 -10.88401 -10.83419 -10.72952 -10.30415 -10.20735 -9.92440 -9.36011 -9.19818 -8.47474 -8.33351 -8.06129 -7.65357 -6.11265 -4.19675 0.56497 1.25749 1.95167 2.64588 2.97866 3.25020 3.32252 3.35218 3.50501 3.65456 3.81096 4.35802 4.46407 4.51478 4.64080 4.82821 4.83386 4.89426 5.02356 5.13321 5.18123 5.20616 5.31356 5.57489 5.71929 5.83479 5.89803 5.99846 6.00674 6.06651 6.12863 6.20943 6.25785 6.44281 6.56128 6.72445 6.79467 6.96107 7.02336 7.17273 7.33417 7.45457 7.66143 7.95329 8.11502 8.37752 8.68513 8.88350 9.46657 10.94139 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024607 B = 0.002974 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.623571 B = 9412.854849 C = 9780.770262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.103 3.897 4 C -0.173 4.173 5 C -0.068 4.068 6 C 0.027 3.973 7 O -0.172 6.172 8 C 0.000 4.000 9 C 0.580 3.420 10 O -0.524 6.524 11 N -0.574 5.574 12 C 0.079 3.921 13 C 0.257 3.743 14 H 0.067 0.933 15 C -0.147 4.147 16 C -0.529 4.529 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.108 4.108 25 C -0.091 4.091 26 C -0.094 4.094 27 C -0.101 4.101 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.013 0.987 37 H 0.095 0.905 38 H 0.031 0.969 39 H 0.264 0.736 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.108 -13.826 2.887 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.058 3.942 4 C -0.191 4.191 5 C -0.087 4.087 6 C -0.021 4.021 7 O -0.074 6.074 8 C -0.050 4.050 9 C 0.365 3.635 10 O -0.404 6.404 11 N -0.303 5.303 12 C -0.065 4.065 13 C 0.158 3.842 14 H 0.084 0.916 15 C -0.205 4.205 16 C -0.567 4.567 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.524 5.524 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.111 4.111 25 C -0.147 4.147 26 C -0.095 4.095 27 C -0.120 4.120 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.032 0.968 37 H 0.114 0.886 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.324 -13.806 2.977 22.351 hybrid contribution -0.500 0.674 -0.909 1.237 sum -17.823 -13.132 2.069 22.235 Atomic orbital electron populations 1.23050 0.78469 1.03929 1.01328 1.86080 1.21234 1.26451 1.89331 1.18603 0.91746 0.84238 0.99586 1.21001 1.00068 0.91017 1.07056 1.19687 0.89063 0.98220 1.01692 1.19762 0.92014 0.85597 1.04720 1.84427 1.14474 1.32299 1.76225 1.22411 0.82491 0.93776 1.06354 1.16825 0.85331 0.82188 0.79130 1.90790 1.23206 1.74296 1.52071 1.48272 1.09481 1.05416 1.67171 1.21850 0.83241 1.00389 1.00978 1.19087 0.82577 0.87772 0.94777 0.91562 1.22092 1.02805 1.00114 0.95497 1.21297 1.09206 1.24842 1.01377 0.92092 1.24884 0.95078 0.96497 0.97213 1.69876 1.11462 1.36180 1.34904 0.86465 0.77382 0.79853 0.83540 1.20565 1.21040 1.19874 1.21254 0.93663 0.92350 1.03823 1.20414 0.93855 0.97521 1.02948 1.19490 0.92636 0.93139 1.04261 1.19598 0.91142 0.96605 1.04680 0.88277 0.92648 0.92640 0.84339 0.84493 0.93542 0.89556 0.91363 0.96820 0.88605 0.94995 0.92579 0.90858 0.88620 0.91735 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.20 10.49 -19.65 -0.21 -3.41 16 3 C 0.10 1.17 6.68 -39.26 -0.26 0.90 16 4 C -0.17 -1.70 9.01 -39.38 -0.35 -2.05 16 5 C -0.07 -0.77 10.05 -39.48 -0.40 -1.16 16 6 C 0.03 0.39 7.40 -38.37 -0.28 0.11 16 7 O -0.17 -2.86 7.14 2.50 0.02 -2.85 16 8 C 0.00 0.00 6.73 -36.91 -0.25 -0.25 16 9 C 0.58 12.64 7.64 -12.72 -0.10 12.54 16 10 O -0.52 -12.61 13.93 5.22 0.07 -12.54 16 11 N -0.57 -12.72 2.75 -176.70 -0.49 -13.21 16 12 C 0.08 1.44 8.52 59.85 0.51 1.95 16 13 C 0.26 6.56 2.63 -69.09 -0.18 6.37 16 14 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 15 C -0.15 -3.50 8.97 37.16 0.33 -3.17 16 16 C -0.53 -14.18 7.95 -34.44 -0.27 -14.46 16 17 H 0.06 1.62 7.44 -52.49 -0.39 1.23 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 19 N -0.89 -24.75 11.32 55.43 0.63 -24.13 16 20 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.11 -1.79 6.39 -102.27 -0.65 -2.44 16 25 C -0.09 -1.34 9.90 36.01 0.36 -0.99 16 26 C -0.09 -1.40 6.36 -105.20 -0.67 -2.07 16 27 C -0.10 -1.29 10.04 -39.09 -0.39 -1.69 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.26 7.65 -51.93 -0.40 -0.14 16 30 H 0.05 0.27 7.65 -51.93 -0.40 -0.13 16 31 H 0.14 0.92 6.26 -52.48 -0.33 0.59 16 32 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.61 7.12 -51.93 -0.37 1.24 16 35 H 0.07 1.16 5.40 -51.93 -0.28 0.88 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 38 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.10 1.60 6.24 -51.93 -0.32 1.27 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 353.42 15.07 5.33 5.33 Total: -1.00 -30.90 353.42 -7.04 -37.94 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.65 Total: 0.57 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.72 Total: -3.57 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.14 Total: -37.33 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.12 Total: -18.80 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.90 -7.04 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609143193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.061 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds