Wall clock time and date at job start Tue Mar 31 2020 11:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48502 * 109.46792 * 269.99285 * 3 2 1 5 5 H 1.48489 * 109.47445 * 29.99707 * 3 2 1 6 6 H 1.48500 * 109.46738 * 149.99822 * 3 2 1 7 7 C 1.39941 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99568 * 176.14085 * 7 2 1 9 9 C 1.41439 * 119.99871 * 356.14491 * 7 2 1 10 10 C 1.40782 * 120.17247 * 145.81463 * 9 7 2 11 11 C 1.37717 * 120.03634 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.41437 * 359.74276 * 11 10 9 13 13 C 1.39877 * 120.35353 * 0.51475 * 12 11 10 14 14 C 1.47884 * 120.02668 * 179.76655 * 13 12 11 15 15 O 1.21547 * 120.00609 * 152.31480 * 14 13 12 16 16 N 1.34783 * 119.99691 * 332.03780 * 14 13 12 17 17 C 1.46500 * 119.99666 * 356.60556 * 16 14 13 18 18 C 1.53004 * 109.47178 * 107.97503 * 17 16 14 19 19 C 1.50705 * 109.47045 * 179.97438 * 18 17 16 20 20 O 1.20826 * 119.99905 * 359.97438 * 19 18 17 21 21 O 1.34223 * 119.99624 * 179.97438 * 19 18 17 22 22 C 1.46495 * 120.00218 * 176.60707 * 16 14 13 23 23 C 1.52997 * 109.47261 * 85.55938 * 22 16 14 24 24 C 1.53006 * 117.49872 * 243.87803 * 23 22 16 25 25 C 1.53008 * 117.50051 * 175.21936 * 23 22 16 26 26 C 1.39038 * 119.95318 * 359.48591 * 13 12 11 27 27 H 0.97005 * 119.99586 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.98368 * 359.97438 * 10 9 7 29 29 H 1.08007 * 119.78898 * 180.02562 * 11 10 9 30 30 H 1.07995 * 119.82082 * 180.25747 * 12 11 10 31 31 H 1.09000 * 109.47103 * 227.97220 * 17 16 14 32 32 H 1.09004 * 109.47436 * 347.97129 * 17 16 14 33 33 H 1.09000 * 109.46872 * 299.99858 * 18 17 16 34 34 H 1.08998 * 109.47094 * 59.99939 * 18 17 16 35 35 H 0.96701 * 117.00202 * 180.02562 * 21 19 18 36 36 H 1.09004 * 109.47326 * 205.55846 * 22 16 14 37 37 H 1.08998 * 109.47104 * 325.56062 * 22 16 14 38 38 H 1.08998 * 115.55128 * 29.54088 * 23 22 16 39 39 H 1.09001 * 117.50052 * 359.97438 * 24 23 22 40 40 H 1.08997 * 117.49791 * 145.02327 * 24 23 22 41 41 H 1.09002 * 117.49345 * 214.98320 * 25 23 22 42 42 H 1.08997 * 117.49282 * 359.97438 * 25 23 22 43 43 H 1.07993 * 120.20567 * 180.23047 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0462 -1.4001 5 1 1.4398 2.6527 0.6999 6 1 3.5398 1.4400 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0860 -1.2130 -0.0624 9 6 1.3030 -2.4354 0.0834 10 6 1.7814 -3.5748 -0.5910 11 6 1.0926 -4.7644 -0.5088 12 6 -0.0685 -4.8514 0.2389 13 6 -0.5619 -3.7285 0.9114 14 6 -1.8063 -3.8283 1.7042 15 8 -1.9828 -3.0904 2.6539 16 7 -2.7473 -4.7337 1.3703 17 6 -2.5711 -5.5676 0.1788 18 6 -2.2574 -7.0038 0.6033 19 6 -2.0768 -7.8618 -0.6225 20 8 -2.1882 -7.3747 -1.7226 21 8 -1.7923 -9.1670 -0.4920 22 6 -3.9461 -4.8838 2.1988 23 6 -4.9992 -3.8638 1.7617 24 6 -5.4092 -2.7932 2.7750 25 6 -6.3720 -3.9333 2.4338 26 6 0.1215 -2.5199 0.8388 27 1 -0.4850 0.8401 -0.0004 28 1 2.6887 -3.5157 -1.1739 29 1 1.4634 -5.6362 -1.0275 30 1 -0.5988 -5.7902 0.3001 31 1 -3.4871 -5.5553 -0.4119 32 1 -1.7477 -5.1774 -0.4194 33 1 -1.3414 -7.0161 1.1940 34 1 -3.0808 -7.3940 1.2014 35 1 -1.6851 -9.6766 -1.3068 36 1 -4.3452 -5.8913 2.0812 37 1 -3.6886 -4.7148 3.2444 38 1 -4.9673 -3.5761 0.7108 39 1 -4.9290 -2.8158 3.7532 40 1 -5.6476 -1.8014 2.3906 41 1 -7.2432 -3.6912 1.8251 42 1 -6.5248 -4.7061 3.1871 43 1 -0.2537 -1.6513 1.3594 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610844302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:30 Heat of formation + Delta-G solvation = -61.925961 kcal Electronic energy + Delta-G solvation = -26708.307604 eV Core-core repulsion = 22912.869478 eV Total energy + Delta-G solvation = -3795.438126 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.55767 -39.63281 -37.53030 -36.71289 -36.35871 -35.43364 -33.61216 -31.39031 -30.33143 -29.46509 -27.17384 -25.30770 -24.81154 -22.30108 -22.11291 -21.26258 -21.07937 -20.40811 -18.86317 -18.18748 -17.54660 -16.88941 -16.42723 -16.04786 -15.59855 -15.26852 -14.95180 -14.90340 -14.59619 -13.75052 -13.73516 -13.34312 -13.27298 -13.02957 -12.58764 -12.53574 -12.37644 -12.01058 -11.80615 -11.60933 -11.50682 -11.41131 -11.28150 -11.11875 -11.07388 -10.67884 -10.47138 -10.37831 -10.31557 -10.04158 -9.85487 -9.65370 -9.28539 -8.96999 -8.45398 -7.63684 -7.39869 -6.70835 -4.45026 2.13527 2.19538 2.78012 2.81302 3.09114 3.11496 3.13470 3.40820 3.77219 3.93921 3.95482 4.62498 4.69747 4.84799 4.89956 4.96734 5.08981 5.14689 5.37219 5.39584 5.48995 5.53050 5.63931 5.68332 5.72220 5.83853 6.04649 6.07223 6.15283 6.21055 6.22481 6.34529 6.40810 6.64587 6.85332 6.98157 6.99771 7.22190 7.36402 7.60737 7.70913 7.79171 7.83062 7.99066 8.16274 8.49569 8.80539 8.81770 8.86291 10.24103 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.004619 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.461040 B = 6060.114533 C = 8191.724618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.071 3.929 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.465 4.465 8 H 0.079 0.921 9 C 0.101 3.899 10 C -0.199 4.199 11 C -0.103 4.103 12 C -0.230 4.230 13 C -0.131 4.131 14 C 0.570 3.430 15 O -0.535 6.535 16 N -0.612 5.612 17 C 0.091 3.909 18 C -0.138 4.138 19 C 0.483 3.517 20 O -0.507 6.507 21 O -0.520 6.520 22 C 0.148 3.852 23 C -0.166 4.166 24 C -0.165 4.165 25 C -0.183 4.183 26 C -0.080 4.080 27 H 0.281 0.719 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.409 0.591 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.371 -12.298 1.451 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.145 4.145 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.495 4.495 8 H 0.097 0.903 9 C 0.098 3.902 10 C -0.219 4.219 11 C -0.121 4.121 12 C -0.249 4.249 13 C -0.134 4.134 14 C 0.362 3.638 15 O -0.412 6.412 16 N -0.345 5.345 17 C -0.032 4.032 18 C -0.176 4.176 19 C 0.324 3.676 20 O -0.394 6.394 21 O -0.332 6.332 22 C 0.025 3.975 23 C -0.186 4.186 24 C -0.202 4.202 25 C -0.220 4.220 26 C -0.101 4.101 27 H 0.092 0.908 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.268 0.732 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.744 -11.338 2.037 14.463 hybrid contribution 0.288 0.328 -0.773 0.887 sum -8.456 -11.011 1.265 13.941 Atomic orbital electron populations 1.69732 1.07345 1.29309 1.36628 1.25893 0.94922 1.01283 0.92430 0.86202 0.80269 0.80485 0.79102 1.19525 1.20145 1.18571 1.19539 0.94811 0.89904 1.45258 0.90250 1.17616 0.91559 0.92439 0.88556 1.21248 1.02165 0.94297 1.04193 1.20487 0.95497 0.96754 0.99350 1.21057 1.00068 0.97510 1.06277 1.19473 0.95437 0.96326 1.02174 1.18926 0.83101 0.78200 0.83605 1.90692 1.79391 1.41592 1.29502 1.47746 1.20335 1.38831 1.27596 1.22191 1.05813 0.87272 0.87951 1.21916 1.06004 0.94987 0.94729 1.23310 0.72198 0.80677 0.91378 1.90767 1.46434 1.73630 1.28600 1.84535 1.82866 1.22982 1.42804 1.20934 0.83860 0.97173 0.95499 1.22725 0.95465 1.01551 0.98845 1.22949 1.02545 0.94256 1.00455 1.22952 0.93171 1.02159 1.03730 1.21645 0.95825 0.95120 0.97465 0.90756 0.88478 0.88909 0.87086 0.90755 0.84449 0.86542 0.87569 0.73233 0.90659 0.90099 0.87772 0.88519 0.89139 0.89098 0.88995 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.29 10.88 55.55 0.60 -20.69 16 2 C 0.07 1.80 5.34 -17.34 -0.09 1.71 16 3 Si 0.91 19.00 29.56 -169.99 -5.03 13.98 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.21 9.05 -37.73 -0.34 -12.55 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 9 C 0.10 2.64 5.51 -106.87 -0.59 2.05 16 10 C -0.20 -4.68 9.78 -38.81 -0.38 -5.06 16 11 C -0.10 -2.16 10.01 -39.72 -0.40 -2.55 16 12 C -0.23 -4.69 7.42 -38.92 -0.29 -4.98 16 13 C -0.13 -3.02 5.50 -105.04 -0.58 -3.59 16 14 C 0.57 12.09 7.44 -12.31 -0.09 12.00 16 15 O -0.54 -12.81 16.34 5.32 0.09 -12.72 16 16 N -0.61 -9.96 2.54 -174.79 -0.44 -10.40 16 17 C 0.09 1.31 4.17 -4.04 -0.02 1.30 16 18 C -0.14 -1.55 5.05 -27.88 -0.14 -1.69 16 19 C 0.48 5.65 8.28 36.01 0.30 5.95 16 20 O -0.51 -7.59 16.74 -18.75 -0.31 -7.91 16 21 O -0.52 -4.64 13.42 -39.24 -0.53 -5.17 16 22 C 0.15 2.00 5.53 -4.05 -0.02 1.97 16 23 C -0.17 -2.26 5.98 -90.61 -0.54 -2.80 16 24 C -0.17 -2.23 10.18 -26.69 -0.27 -2.51 16 25 C -0.18 -1.98 10.26 -26.69 -0.27 -2.25 16 26 C -0.08 -2.11 8.17 -38.44 -0.31 -2.43 16 27 H 0.28 6.88 8.30 -40.82 -0.34 6.55 16 28 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 29 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.11 1.89 2.83 -52.49 -0.15 1.75 16 31 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 32 H 0.14 2.40 4.04 -51.93 -0.21 2.19 16 33 H 0.12 1.34 6.88 -51.93 -0.36 0.98 16 34 H 0.11 0.92 7.29 -51.93 -0.38 0.54 16 35 H 0.41 1.97 9.10 45.56 0.41 2.38 16 36 H 0.08 0.77 7.15 -51.93 -0.37 0.40 16 37 H 0.08 1.17 7.35 -51.93 -0.38 0.79 16 38 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.10 1.36 8.03 -51.93 -0.42 0.94 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.13 3.78 6.21 -52.49 -0.33 3.46 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -31.42 360.26 -8.91 -40.33 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -4.68 Total: 12.59 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -4.04 Total: -15.44 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.16 Total: -31.09 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.75 Total: -25.80 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.42 -8.91 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610844302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.601 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds