Wall clock time and date at job start Tue Mar 31 2020 11:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48502 * 109.46792 * 269.99285 * 3 2 1 5 5 H 1.48489 * 109.47445 * 29.99707 * 3 2 1 6 6 H 1.48500 * 109.46738 * 149.99822 * 3 2 1 7 7 C 1.39941 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99568 * 176.14085 * 7 2 1 9 9 C 1.41439 * 119.99871 * 356.14491 * 7 2 1 10 10 C 1.40782 * 120.17247 * 145.81463 * 9 7 2 11 11 C 1.37717 * 120.03634 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.41437 * 359.74276 * 11 10 9 13 13 C 1.39877 * 120.35353 * 0.51475 * 12 11 10 14 14 C 1.47884 * 120.02668 * 179.76655 * 13 12 11 15 15 O 1.21547 * 120.00609 * 152.31480 * 14 13 12 16 16 N 1.34783 * 119.99691 * 332.03780 * 14 13 12 17 17 C 1.46500 * 119.99666 * 356.60556 * 16 14 13 18 18 C 1.53004 * 109.47178 * 107.97503 * 17 16 14 19 19 C 1.50705 * 109.47045 * 179.97438 * 18 17 16 20 20 O 1.20826 * 119.99905 * 359.97438 * 19 18 17 21 21 O 1.34223 * 119.99624 * 179.97438 * 19 18 17 22 22 C 1.46495 * 120.00218 * 176.60707 * 16 14 13 23 23 C 1.52997 * 109.47261 * 85.55938 * 22 16 14 24 24 C 1.53006 * 117.49872 * 243.87803 * 23 22 16 25 25 C 1.53008 * 117.50051 * 175.21936 * 23 22 16 26 26 C 1.39038 * 119.95318 * 359.48591 * 13 12 11 27 27 H 0.97005 * 119.99586 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.98368 * 359.97438 * 10 9 7 29 29 H 1.08007 * 119.78898 * 180.02562 * 11 10 9 30 30 H 1.07995 * 119.82082 * 180.25747 * 12 11 10 31 31 H 1.09000 * 109.47103 * 227.97220 * 17 16 14 32 32 H 1.09004 * 109.47436 * 347.97129 * 17 16 14 33 33 H 1.09000 * 109.46872 * 299.99858 * 18 17 16 34 34 H 1.08998 * 109.47094 * 59.99939 * 18 17 16 35 35 H 0.96701 * 117.00202 * 180.02562 * 21 19 18 36 36 H 1.09004 * 109.47326 * 205.55846 * 22 16 14 37 37 H 1.08998 * 109.47104 * 325.56062 * 22 16 14 38 38 H 1.08998 * 115.55128 * 29.54088 * 23 22 16 39 39 H 1.09001 * 117.50052 * 359.97438 * 24 23 22 40 40 H 1.08997 * 117.49791 * 145.02327 * 24 23 22 41 41 H 1.09002 * 117.49345 * 214.98320 * 25 23 22 42 42 H 1.08997 * 117.49282 * 359.97438 * 25 23 22 43 43 H 1.07993 * 120.20567 * 180.23047 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0462 -1.4001 5 1 1.4398 2.6527 0.6999 6 1 3.5398 1.4400 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0860 -1.2130 -0.0624 9 6 1.3030 -2.4354 0.0834 10 6 1.7814 -3.5748 -0.5910 11 6 1.0926 -4.7644 -0.5088 12 6 -0.0685 -4.8514 0.2389 13 6 -0.5619 -3.7285 0.9114 14 6 -1.8063 -3.8283 1.7042 15 8 -1.9828 -3.0904 2.6539 16 7 -2.7473 -4.7337 1.3703 17 6 -2.5711 -5.5676 0.1788 18 6 -2.2574 -7.0038 0.6033 19 6 -2.0768 -7.8618 -0.6225 20 8 -2.1882 -7.3747 -1.7226 21 8 -1.7923 -9.1670 -0.4920 22 6 -3.9461 -4.8838 2.1988 23 6 -4.9992 -3.8638 1.7617 24 6 -5.4092 -2.7932 2.7750 25 6 -6.3720 -3.9333 2.4338 26 6 0.1215 -2.5199 0.8388 27 1 -0.4850 0.8401 -0.0004 28 1 2.6887 -3.5157 -1.1739 29 1 1.4634 -5.6362 -1.0275 30 1 -0.5988 -5.7902 0.3001 31 1 -3.4871 -5.5553 -0.4119 32 1 -1.7477 -5.1774 -0.4194 33 1 -1.3414 -7.0161 1.1940 34 1 -3.0808 -7.3940 1.2014 35 1 -1.6851 -9.6766 -1.3068 36 1 -4.3452 -5.8913 2.0812 37 1 -3.6886 -4.7148 3.2444 38 1 -4.9673 -3.5761 0.7108 39 1 -4.9290 -2.8158 3.7532 40 1 -5.6476 -1.8014 2.3906 41 1 -7.2432 -3.6912 1.8251 42 1 -6.5248 -4.7061 3.1871 43 1 -0.2537 -1.6513 1.3594 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610844302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:30 Heat of formation + Delta-G solvation = -80.732963 kcal Electronic energy + Delta-G solvation = -26709.123137 eV Core-core repulsion = 22912.869478 eV Total energy + Delta-G solvation = -3796.253659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72738 -40.89379 -39.07106 -38.13672 -37.29821 -36.69392 -35.44000 -32.60155 -32.02863 -31.28271 -28.47830 -27.13109 -26.03690 -23.75992 -23.19278 -22.90567 -22.18128 -21.67541 -20.29746 -19.41814 -18.93194 -18.04774 -17.79354 -17.31239 -17.16863 -16.65624 -16.40930 -16.25883 -15.84943 -15.21756 -15.15615 -14.78390 -14.63688 -14.34221 -14.20951 -14.06396 -13.57157 -13.42580 -13.22357 -12.90030 -12.81616 -12.71345 -12.56447 -12.45005 -12.36546 -12.14661 -12.01594 -11.87500 -11.61636 -11.43422 -11.38446 -11.12814 -10.90513 -10.62511 -9.84025 -9.43256 -9.25710 -8.58310 -6.42908 0.40106 0.98021 1.25918 1.36218 1.44582 1.50668 1.75210 1.97199 2.20596 2.40992 2.79573 2.91572 3.59423 3.67096 3.73027 3.81241 3.92551 3.98959 4.13673 4.28413 4.36961 4.43001 4.50817 4.56070 4.61409 4.70463 4.72919 4.79304 4.86708 5.00197 5.01924 5.09442 5.15117 5.23064 5.27679 5.30976 5.49946 5.60794 5.68974 5.80334 5.89890 6.03096 6.25222 6.33407 6.59437 6.90035 6.92546 7.05398 7.22598 8.38238 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.004619 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.461040 B = 6060.114533 C = 8191.724618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.026 3.974 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.502 4.502 8 H 0.081 0.919 9 C 0.068 3.932 10 C -0.204 4.204 11 C -0.104 4.104 12 C -0.204 4.204 13 C -0.141 4.141 14 C 0.564 3.436 15 O -0.574 6.574 16 N -0.597 5.597 17 C 0.089 3.911 18 C -0.133 4.133 19 C 0.493 3.507 20 O -0.545 6.545 21 O -0.510 6.510 22 C 0.146 3.854 23 C -0.184 4.184 24 C -0.193 4.193 25 C -0.140 4.140 26 C -0.115 4.115 27 H 0.283 0.717 28 H 0.109 0.891 29 H 0.134 0.866 30 H 0.152 0.848 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.144 0.856 35 H 0.429 0.571 36 H 0.123 0.877 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 -15.656 1.170 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.533 4.533 8 H 0.099 0.901 9 C 0.066 3.934 10 C -0.223 4.223 11 C -0.122 4.122 12 C -0.222 4.222 13 C -0.144 4.144 14 C 0.355 3.645 15 O -0.454 6.454 16 N -0.328 5.328 17 C -0.034 4.034 18 C -0.171 4.171 19 C 0.336 3.664 20 O -0.436 6.436 21 O -0.324 6.324 22 C 0.024 3.976 23 C -0.204 4.204 24 C -0.230 4.230 25 C -0.178 4.178 26 C -0.136 4.136 27 H 0.093 0.907 28 H 0.128 0.872 29 H 0.152 0.848 30 H 0.169 0.831 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.162 0.838 35 H 0.291 0.709 36 H 0.141 0.859 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.135 0.865 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.815 -14.780 1.734 17.826 hybrid contribution 0.514 1.107 -0.716 1.415 sum -9.301 -13.673 1.018 16.568 Atomic orbital electron populations 1.69859 1.08964 1.30049 1.38374 1.26789 0.95614 1.04679 0.91520 0.85134 0.78870 0.75800 0.79480 1.18456 1.19841 1.17887 1.19816 0.95068 0.91012 1.47400 0.90060 1.17936 0.92193 0.93700 0.89588 1.21516 1.02701 0.94414 1.03705 1.20940 0.95076 0.97177 0.99024 1.21557 0.99214 0.98043 1.03412 1.19783 0.96225 0.96053 1.02364 1.18766 0.83637 0.79001 0.83092 1.90667 1.80204 1.43371 1.31206 1.47674 1.19941 1.37313 1.27875 1.22158 1.05472 0.88850 0.86901 1.21807 1.07663 0.92631 0.95023 1.23205 0.71274 0.81360 0.90591 1.90779 1.48354 1.74512 1.29945 1.84480 1.81979 1.21707 1.44193 1.21226 0.82403 0.99625 0.94307 1.22711 0.97856 1.01886 0.97916 1.22951 1.05175 0.94830 1.00068 1.23047 0.91810 1.00176 1.02726 1.21414 0.97427 0.95497 0.99264 0.90710 0.87248 0.84844 0.83137 0.89259 0.87603 0.86217 0.83803 0.70907 0.85900 0.91141 0.89354 0.89664 0.90279 0.87545 0.86482 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.89 10.88 21.83 0.24 -47.66 16 2 C 0.03 1.39 5.34 85.26 0.45 1.84 16 3 Si 0.99 40.62 29.56 68.60 2.03 42.65 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.50 -27.85 9.05 23.47 0.21 -27.64 16 8 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 9 C 0.07 3.73 5.51 -21.32 -0.12 3.61 16 10 C -0.20 -9.64 9.78 22.77 0.22 -9.42 16 11 C -0.10 -4.21 10.01 22.18 0.22 -3.99 16 12 C -0.20 -8.06 7.42 22.70 0.17 -7.90 16 13 C -0.14 -6.68 5.50 -20.13 -0.11 -6.79 16 14 C 0.56 24.48 7.44 86.80 0.65 25.13 16 15 O -0.57 -28.92 16.34 -3.86 -0.06 -28.99 16 16 N -0.60 -18.63 2.54 -825.17 -2.09 -20.72 16 17 C 0.09 2.33 4.17 86.38 0.36 2.69 16 18 C -0.13 -2.40 5.05 29.85 0.15 -2.25 16 19 C 0.49 9.49 8.28 71.24 0.59 10.08 16 20 O -0.55 -14.70 16.74 21.96 0.37 -14.34 16 21 O -0.51 -6.74 13.42 -51.35 -0.69 -7.43 16 22 C 0.15 3.59 5.53 86.38 0.48 4.07 16 23 C -0.18 -4.77 5.98 -10.79 -0.06 -4.84 16 24 C -0.19 -5.26 10.18 30.62 0.31 -4.95 16 25 C -0.14 -2.64 10.26 30.62 0.31 -2.33 16 26 C -0.12 -6.46 8.17 23.01 0.19 -6.27 16 27 H 0.28 14.81 8.30 -92.70 -0.77 14.04 16 28 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 29 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 30 H 0.15 4.70 2.83 -2.91 -0.01 4.69 16 31 H 0.09 2.15 8.10 -2.39 -0.02 2.13 16 32 H 0.11 3.50 4.04 -2.39 -0.01 3.49 16 33 H 0.12 2.18 6.88 -2.39 -0.02 2.17 16 34 H 0.14 1.60 7.29 -2.39 -0.02 1.59 16 35 H 0.43 2.28 9.10 -74.06 -0.67 1.60 16 36 H 0.12 1.86 7.15 -2.38 -0.02 1.85 16 37 H 0.07 1.94 7.35 -2.39 -0.02 1.92 16 38 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.08 2.49 8.03 -2.39 -0.02 2.47 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.10 5.97 6.21 -2.91 -0.02 5.95 16 Total: -1.00 -75.44 360.26 4.20 -71.24 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: 0.39 Total: 34.19 kcal Atomic # 6 Polarization: -32.98 SS G_CDS: 4.03 Total: -28.95 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -1.86 Total: -68.38 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -0.38 Total: -50.75 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -75.44 4.20 -71.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610844302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.494 kcal (2) G-P(sol) polarization free energy of solvation -75.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds