Wall clock time and date at job start Tue Mar 31 2020 10:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86802 * 119.99633 * 2 1 4 4 H 1.48507 * 109.46780 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47391 * 300.00497 * 3 2 1 6 6 H 1.48498 * 109.46735 * 60.00658 * 3 2 1 7 7 C 1.39935 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99671 * 169.62508 * 7 2 1 9 9 C 1.41432 * 120.00456 * 349.89579 * 7 2 1 10 10 C 1.40785 * 120.18172 * 150.67012 * 9 7 2 11 11 C 1.37701 * 120.04207 * 179.97438 * 10 9 7 12 12 C 1.38378 * 120.41323 * 0.04467 * 11 10 9 13 13 C 1.39872 * 120.35623 * 359.97438 * 12 11 10 14 14 C 1.47887 * 120.02510 * 180.02562 * 13 12 11 15 15 O 1.21550 * 120.00024 * 211.55195 * 14 13 12 16 16 N 1.34774 * 120.00090 * 31.54450 * 14 13 12 17 17 C 1.46925 * 120.63094 * 0.41422 * 16 14 13 18 18 C 1.53194 * 108.77917 * 126.36314 * 17 16 14 19 19 C 1.53042 * 109.31177 * 54.63428 * 18 17 16 20 20 C 1.53039 * 109.53787 * 298.63814 * 19 18 17 21 21 C 1.46930 * 120.63337 * 180.12812 * 16 14 13 22 22 H 1.08998 * 109.58545 * 113.84608 * 21 16 14 23 23 C 1.53006 * 109.58404 * 353.42079 * 21 16 14 24 24 C 1.50706 * 109.46846 * 75.44949 * 23 21 16 25 25 O 1.20819 * 119.99761 * 359.97438 * 24 23 21 26 26 O 1.34228 * 119.99692 * 179.97438 * 24 23 21 27 27 C 1.39038 * 119.95176 * 359.67962 * 13 12 11 28 28 H 0.96992 * 120.00362 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.97414 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.79396 * 180.02562 * 11 10 9 31 31 H 1.08001 * 119.81900 * 179.97438 * 12 11 10 32 32 H 1.09006 * 109.58620 * 246.15129 * 17 16 14 33 33 H 1.09003 * 109.58721 * 6.57293 * 17 16 14 34 34 H 1.09002 * 109.49728 * 174.58554 * 18 17 16 35 35 H 1.08993 * 109.49834 * 294.65190 * 18 17 16 36 36 H 1.08998 * 109.45787 * 58.65712 * 19 18 17 37 37 H 1.09001 * 109.45892 * 178.61535 * 19 18 17 38 38 H 1.08997 * 109.49717 * 181.31515 * 20 19 18 39 39 H 1.09002 * 109.49667 * 301.37898 * 20 19 18 40 40 H 1.08999 * 109.47219 * 195.44621 * 23 21 16 41 41 H 1.08994 * 109.47003 * 315.45006 * 23 21 16 42 42 H 0.96697 * 116.99723 * 179.97438 * 26 24 23 43 43 H 1.07994 * 120.20433 * 180.30355 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8835 2.3963 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0747 -1.2194 -0.1690 9 6 1.3173 -2.4274 0.2138 10 6 1.7929 -3.6222 -0.3592 11 6 1.1185 -4.8041 -0.1482 12 6 -0.0287 -4.8276 0.6252 13 6 -0.5165 -3.6505 1.2022 14 6 -1.7429 -3.6841 2.0279 15 8 -2.4832 -2.7204 2.0561 16 7 -2.0399 -4.7833 2.7489 17 6 -1.1504 -5.9526 2.7320 18 6 -0.7897 -6.3188 4.1751 19 6 -2.0742 -6.5178 4.9830 20 6 -2.8746 -5.2136 5.0012 21 6 -3.2562 -4.8328 3.5718 22 1 -3.9404 -5.5791 3.1680 23 6 -3.9317 -3.4600 3.5717 24 6 -4.6294 -3.2436 2.2536 25 8 -4.5900 -4.0993 1.4016 26 8 -5.2946 -2.1001 2.0262 27 6 0.1566 -2.4500 1.0049 28 1 -0.4850 0.8399 0.0004 29 1 2.6873 -3.6117 -0.9646 30 1 1.4872 -5.7184 -0.5893 31 1 -0.5503 -5.7599 0.7841 32 1 -1.6595 -6.7921 2.2584 33 1 -0.2428 -5.7133 2.1779 34 1 -0.2089 -7.2411 4.1821 35 1 -0.2016 -5.5151 4.6182 36 1 -2.6729 -7.3050 4.5249 37 1 -1.8205 -6.8025 6.0041 38 1 -3.7778 -5.3493 5.5961 39 1 -2.2676 -4.4202 5.4372 40 1 -4.6608 -3.4137 4.3806 41 1 -3.1792 -2.6848 3.7161 42 1 -5.7260 -2.0069 1.1658 43 1 -0.2136 -1.5396 1.4525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611526491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:35 Heat of formation + Delta-G solvation = -79.239320 kcal Electronic energy + Delta-G solvation = -27732.761089 eV Core-core repulsion = 23936.572200 eV Total energy + Delta-G solvation = -3796.188889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.79782 -39.12222 -37.53932 -36.79782 -35.51065 -33.99007 -32.85628 -32.54959 -29.86060 -29.53948 -28.27782 -25.50656 -24.99830 -23.04775 -22.41838 -21.10922 -20.50839 -20.32629 -18.81593 -17.64564 -17.30924 -16.27299 -16.11570 -15.80282 -15.45248 -15.17205 -14.80164 -14.71440 -14.09544 -13.84319 -13.75057 -13.39763 -13.13040 -12.82482 -12.71253 -12.46785 -12.24502 -12.05484 -12.00845 -11.67519 -11.25879 -11.15936 -11.09363 -10.96849 -10.82764 -10.74958 -10.72641 -10.62589 -10.12167 -10.03585 -9.87203 -9.61903 -9.27334 -8.57696 -8.23551 -7.61303 -7.44837 -6.74001 -4.44602 2.19232 2.75930 2.91316 3.07294 3.10816 3.12082 3.35958 3.56960 3.78916 3.92209 4.59048 4.62876 4.82965 4.88638 5.13449 5.16843 5.33610 5.43654 5.48765 5.53489 5.63414 5.69603 5.79569 5.89754 5.95601 5.98277 6.04164 6.10669 6.15333 6.20244 6.27914 6.38906 6.66314 6.92249 6.97690 7.01894 7.08641 7.20511 7.36816 7.63461 7.74798 7.84997 7.98842 8.14992 8.48937 8.49776 8.79566 8.80602 8.85391 10.19399 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.004848 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.877716 B = 5774.194249 C = 6906.413750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.070 3.930 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.462 4.462 8 H 0.080 0.920 9 C 0.101 3.899 10 C -0.206 4.206 11 C -0.100 4.100 12 C -0.228 4.228 13 C -0.124 4.124 14 C 0.579 3.421 15 O -0.546 6.546 16 N -0.601 5.601 17 C 0.073 3.927 18 C -0.136 4.136 19 C -0.118 4.118 20 C -0.130 4.130 21 C 0.158 3.842 22 H 0.078 0.922 23 C -0.109 4.109 24 C 0.515 3.485 25 O -0.539 6.539 26 O -0.520 6.520 27 C -0.091 4.091 28 H 0.283 0.717 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.136 0.864 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.134 0.866 42 H 0.401 0.599 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.088 -8.562 9.428 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.148 4.148 3 Si 0.736 3.264 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.491 4.491 8 H 0.098 0.902 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.118 4.118 12 C -0.247 4.247 13 C -0.127 4.127 14 C 0.373 3.627 15 O -0.428 6.428 16 N -0.333 5.333 17 C -0.048 4.048 18 C -0.175 4.175 19 C -0.155 4.155 20 C -0.169 4.169 21 C 0.055 3.945 22 H 0.095 0.905 23 C -0.147 4.147 24 C 0.361 3.639 25 O -0.429 6.429 26 O -0.331 6.331 27 C -0.111 4.111 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.151 0.849 42 H 0.258 0.742 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.478 -8.167 9.600 13.743 hybrid contribution -0.019 0.741 -0.741 1.048 sum -5.497 -7.427 8.859 12.800 Atomic orbital electron populations 1.69782 1.07317 1.29422 1.34984 1.25950 0.94874 1.01403 0.92532 0.86201 0.80672 0.80881 0.78626 1.18441 1.19918 1.19711 1.19602 0.95887 0.90222 1.43427 0.90173 1.17605 0.91452 0.92505 0.88614 1.21175 1.02743 0.93448 1.05261 1.20489 0.95947 0.96780 0.98617 1.20783 1.00386 0.96022 1.07545 1.19436 0.95440 0.95662 1.02128 1.18866 0.85623 0.80502 0.77705 1.90505 1.50480 1.36391 1.65435 1.47839 1.23198 1.16076 1.46188 1.22842 0.97124 0.87541 0.97339 1.21968 0.97435 1.01981 0.96089 1.21504 0.96757 0.97042 1.00236 1.21909 1.00769 0.98537 0.95651 1.20900 0.86631 0.96216 0.90796 0.90456 1.21760 1.00654 0.99987 0.92279 1.22662 0.73171 0.78102 0.89998 1.90652 1.59905 1.45474 1.46893 1.84472 1.64919 1.41414 1.42290 1.21569 0.96384 0.95118 0.98004 0.90608 0.88568 0.88747 0.87183 0.92003 0.84730 0.90889 0.91337 0.91890 0.91790 0.90792 0.91099 0.89900 0.84867 0.74150 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.07 10.86 55.55 0.60 -20.47 16 2 C 0.07 1.78 5.26 -17.34 -0.09 1.68 16 3 Si 0.91 18.77 29.57 -169.99 -5.03 13.74 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.46 -12.05 9.06 -37.73 -0.34 -12.39 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 9 C 0.10 2.63 5.54 -106.87 -0.59 2.04 16 10 C -0.21 -4.84 9.78 -38.82 -0.38 -5.22 16 11 C -0.10 -2.11 10.01 -39.73 -0.40 -2.50 16 12 C -0.23 -4.79 7.43 -38.92 -0.29 -5.08 16 13 C -0.12 -2.90 5.51 -105.04 -0.58 -3.48 16 14 C 0.58 12.61 6.68 -12.31 -0.08 12.52 16 15 O -0.55 -12.91 10.30 -19.07 -0.20 -13.10 16 16 N -0.60 -10.33 2.92 -166.55 -0.49 -10.82 16 17 C 0.07 1.05 4.83 -3.71 -0.02 1.04 16 18 C -0.14 -1.55 6.08 -26.61 -0.16 -1.71 16 19 C -0.12 -1.16 5.89 -26.69 -0.16 -1.32 16 20 C -0.13 -1.42 5.29 -26.83 -0.14 -1.56 16 21 C 0.16 2.30 2.45 -67.82 -0.17 2.13 16 22 H 0.08 1.15 7.57 -51.93 -0.39 0.76 16 23 C -0.11 -1.69 4.83 -27.88 -0.13 -1.83 16 24 C 0.52 9.47 5.49 36.01 0.20 9.67 16 25 O -0.54 -11.41 15.63 -25.49 -0.40 -11.81 16 26 O -0.52 -8.57 13.42 -42.21 -0.57 -9.14 16 27 C -0.09 -2.37 8.20 -38.44 -0.32 -2.69 16 28 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 29 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 30 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 31 H 0.11 2.02 5.30 -52.49 -0.28 1.74 16 32 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 33 H 0.14 2.15 3.68 -52.31 -0.19 1.95 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.97 8.05 -51.93 -0.42 0.56 16 41 H 0.13 2.36 5.99 -51.97 -0.31 2.05 16 42 H 0.40 5.10 9.10 45.56 0.41 5.52 16 43 H 0.13 3.69 6.15 -52.49 -0.32 3.37 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -31.82 341.44 -9.43 -41.25 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -4.85 Total: 13.90 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -3.65 Total: -8.69 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.12 Total: -31.29 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -1.16 Total: -34.05 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.82 -9.43 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611526491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.993 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds