Wall clock time and date at job start Tue Mar 31 2020 10:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86802 * 119.99633 * 2 1 4 4 H 1.48507 * 109.46780 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47391 * 300.00497 * 3 2 1 6 6 H 1.48498 * 109.46735 * 60.00658 * 3 2 1 7 7 C 1.39935 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99671 * 169.62508 * 7 2 1 9 9 C 1.41432 * 120.00456 * 349.89579 * 7 2 1 10 10 C 1.40785 * 120.18172 * 150.67012 * 9 7 2 11 11 C 1.37701 * 120.04207 * 179.97438 * 10 9 7 12 12 C 1.38378 * 120.41323 * 0.04467 * 11 10 9 13 13 C 1.39872 * 120.35623 * 359.97438 * 12 11 10 14 14 C 1.47887 * 120.02510 * 180.02562 * 13 12 11 15 15 O 1.21550 * 120.00024 * 211.55195 * 14 13 12 16 16 N 1.34774 * 120.00090 * 31.54450 * 14 13 12 17 17 C 1.46925 * 120.63094 * 0.41422 * 16 14 13 18 18 C 1.53194 * 108.77917 * 126.36314 * 17 16 14 19 19 C 1.53042 * 109.31177 * 54.63428 * 18 17 16 20 20 C 1.53039 * 109.53787 * 298.63814 * 19 18 17 21 21 C 1.46930 * 120.63337 * 180.12812 * 16 14 13 22 22 H 1.08998 * 109.58545 * 113.84608 * 21 16 14 23 23 C 1.53006 * 109.58404 * 353.42079 * 21 16 14 24 24 C 1.50706 * 109.46846 * 75.44949 * 23 21 16 25 25 O 1.20819 * 119.99761 * 359.97438 * 24 23 21 26 26 O 1.34228 * 119.99692 * 179.97438 * 24 23 21 27 27 C 1.39038 * 119.95176 * 359.67962 * 13 12 11 28 28 H 0.96992 * 120.00362 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.97414 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.79396 * 180.02562 * 11 10 9 31 31 H 1.08001 * 119.81900 * 179.97438 * 12 11 10 32 32 H 1.09006 * 109.58620 * 246.15129 * 17 16 14 33 33 H 1.09003 * 109.58721 * 6.57293 * 17 16 14 34 34 H 1.09002 * 109.49728 * 174.58554 * 18 17 16 35 35 H 1.08993 * 109.49834 * 294.65190 * 18 17 16 36 36 H 1.08998 * 109.45787 * 58.65712 * 19 18 17 37 37 H 1.09001 * 109.45892 * 178.61535 * 19 18 17 38 38 H 1.08997 * 109.49717 * 181.31515 * 20 19 18 39 39 H 1.09002 * 109.49667 * 301.37898 * 20 19 18 40 40 H 1.08999 * 109.47219 * 195.44621 * 23 21 16 41 41 H 1.08994 * 109.47003 * 315.45006 * 23 21 16 42 42 H 0.96697 * 116.99723 * 179.97438 * 26 24 23 43 43 H 1.07994 * 120.20433 * 180.30355 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8835 2.3963 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0747 -1.2194 -0.1690 9 6 1.3173 -2.4274 0.2138 10 6 1.7929 -3.6222 -0.3592 11 6 1.1185 -4.8041 -0.1482 12 6 -0.0287 -4.8276 0.6252 13 6 -0.5165 -3.6505 1.2022 14 6 -1.7429 -3.6841 2.0279 15 8 -2.4832 -2.7204 2.0561 16 7 -2.0399 -4.7833 2.7489 17 6 -1.1504 -5.9526 2.7320 18 6 -0.7897 -6.3188 4.1751 19 6 -2.0742 -6.5178 4.9830 20 6 -2.8746 -5.2136 5.0012 21 6 -3.2562 -4.8328 3.5718 22 1 -3.9404 -5.5791 3.1680 23 6 -3.9317 -3.4600 3.5717 24 6 -4.6294 -3.2436 2.2536 25 8 -4.5900 -4.0993 1.4016 26 8 -5.2946 -2.1001 2.0262 27 6 0.1566 -2.4500 1.0049 28 1 -0.4850 0.8399 0.0004 29 1 2.6873 -3.6117 -0.9646 30 1 1.4872 -5.7184 -0.5893 31 1 -0.5503 -5.7599 0.7841 32 1 -1.6595 -6.7921 2.2584 33 1 -0.2428 -5.7133 2.1779 34 1 -0.2089 -7.2411 4.1821 35 1 -0.2016 -5.5151 4.6182 36 1 -2.6729 -7.3050 4.5249 37 1 -1.8205 -6.8025 6.0041 38 1 -3.7778 -5.3493 5.5961 39 1 -2.2676 -4.4202 5.4372 40 1 -4.6608 -3.4137 4.3806 41 1 -3.1792 -2.6848 3.7161 42 1 -5.7260 -2.0069 1.1658 43 1 -0.2136 -1.5396 1.4525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611526491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:34 Heat of formation + Delta-G solvation = -98.213663 kcal Electronic energy + Delta-G solvation = -27733.583878 eV Core-core repulsion = 23936.572200 eV Total energy + Delta-G solvation = -3797.011679 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.20944 -40.58887 -39.14300 -38.26182 -36.93563 -35.74892 -34.27232 -33.69208 -31.61516 -31.31096 -29.46483 -27.34814 -26.27956 -24.34465 -23.84575 -22.82353 -21.96102 -21.45615 -20.35585 -19.23154 -18.85962 -17.75109 -17.49526 -17.38849 -16.97681 -16.74574 -16.37271 -16.03345 -15.33565 -15.23698 -15.18637 -14.67279 -14.50022 -14.39228 -14.21649 -13.98950 -13.59245 -13.50832 -13.35616 -13.24595 -12.84931 -12.69048 -12.54300 -12.32147 -12.22801 -12.12964 -11.83351 -11.78547 -11.65600 -11.55589 -11.44462 -11.21855 -11.07332 -10.14645 -9.63522 -9.36811 -9.30306 -8.60581 -6.41393 0.41689 0.97365 1.35813 1.40237 1.47195 1.51824 2.00799 2.11164 2.19423 2.37033 2.76008 3.47486 3.62834 3.86930 3.93932 4.00802 4.12814 4.21995 4.27878 4.38970 4.42874 4.55075 4.56256 4.65878 4.84181 4.85841 4.88386 4.98413 5.00004 5.08251 5.10451 5.19096 5.20444 5.25320 5.31269 5.49349 5.51428 5.69624 5.77722 5.82519 5.92836 6.03266 6.26778 6.39403 6.60580 6.88464 6.93070 7.14567 7.24490 8.34538 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.004848 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.877716 B = 5774.194249 C = 6906.413750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.026 3.974 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.497 4.497 8 H 0.083 0.917 9 C 0.068 3.932 10 C -0.213 4.213 11 C -0.097 4.097 12 C -0.209 4.209 13 C -0.136 4.136 14 C 0.567 3.433 15 O -0.578 6.578 16 N -0.592 5.592 17 C 0.065 3.935 18 C -0.131 4.131 19 C -0.114 4.114 20 C -0.124 4.124 21 C 0.154 3.846 22 H 0.081 0.919 23 C -0.108 4.108 24 C 0.509 3.491 25 O -0.573 6.573 26 O -0.522 6.522 27 C -0.122 4.122 28 H 0.284 0.716 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.126 0.874 41 H 0.108 0.892 42 H 0.414 0.586 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 -11.184 10.862 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.187 4.187 3 Si 0.806 3.194 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.527 4.527 8 H 0.101 0.899 9 C 0.066 3.934 10 C -0.232 4.232 11 C -0.115 4.115 12 C -0.228 4.228 13 C -0.139 4.139 14 C 0.359 3.641 15 O -0.462 6.462 16 N -0.323 5.323 17 C -0.056 4.056 18 C -0.169 4.169 19 C -0.151 4.151 20 C -0.162 4.162 21 C 0.051 3.949 22 H 0.099 0.901 23 C -0.146 4.146 24 C 0.356 3.644 25 O -0.466 6.466 26 O -0.334 6.334 27 C -0.143 4.143 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.143 0.857 41 H 0.126 0.874 42 H 0.274 0.726 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.509 -10.835 11.056 16.431 hybrid contribution -0.098 1.352 -1.173 1.793 sum -5.607 -9.483 9.883 14.800 Atomic orbital electron populations 1.69909 1.09077 1.30191 1.36981 1.26852 0.95495 1.04879 0.91502 0.85105 0.79529 0.76070 0.78678 1.17385 1.19269 1.19378 1.19874 0.96180 0.91277 1.45372 0.89883 1.17958 0.92086 0.93870 0.89474 1.21459 1.03278 0.93521 1.04981 1.20948 0.95298 0.97564 0.97724 1.21253 0.99939 0.96365 1.05218 1.19797 0.96055 0.95629 1.02421 1.18750 0.85120 0.81674 0.78550 1.90500 1.51252 1.37859 1.66589 1.47923 1.24172 1.15269 1.44897 1.22985 0.95959 0.86796 0.99874 1.21941 0.98594 1.02585 0.93799 1.21524 0.95639 0.96542 1.01440 1.21927 1.02349 0.98933 0.92993 1.21204 0.85406 0.95636 0.92654 0.90118 1.21803 1.00810 0.99870 0.92089 1.23325 0.72596 0.77749 0.90709 1.90613 1.61250 1.46591 1.48182 1.84453 1.64740 1.40855 1.43400 1.21342 0.97877 0.95187 0.99896 0.90594 0.87283 0.84326 0.83795 0.90036 0.86607 0.88266 0.92822 0.90651 0.89364 0.87576 0.91936 0.85659 0.87385 0.72641 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.53 10.86 21.82 0.24 -47.29 16 2 C 0.03 1.37 5.26 85.25 0.45 1.82 16 3 Si 0.99 40.00 29.57 68.60 2.03 42.03 16 4 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.50 -27.22 9.06 23.47 0.21 -27.01 16 8 H 0.08 4.29 7.87 -2.91 -0.02 4.27 16 9 C 0.07 3.73 5.54 -21.32 -0.12 3.61 16 10 C -0.21 -10.02 9.78 22.77 0.22 -9.80 16 11 C -0.10 -3.92 10.01 22.18 0.22 -3.70 16 12 C -0.21 -8.54 7.43 22.70 0.17 -8.37 16 13 C -0.14 -6.57 5.51 -20.13 -0.11 -6.68 16 14 C 0.57 25.28 6.68 86.80 0.58 25.86 16 15 O -0.58 -28.62 10.30 19.45 0.20 -28.42 16 16 N -0.59 -19.77 2.92 -799.13 -2.34 -22.11 16 17 C 0.06 1.69 4.83 86.36 0.42 2.11 16 18 C -0.13 -2.53 6.08 30.67 0.19 -2.34 16 19 C -0.11 -1.74 5.89 30.62 0.18 -1.56 16 20 C -0.12 -2.27 5.29 30.53 0.16 -2.11 16 21 C 0.15 4.16 2.45 44.83 0.11 4.27 16 22 H 0.08 2.19 7.57 -2.39 -0.02 2.17 16 23 C -0.11 -3.27 4.83 29.85 0.14 -3.13 16 24 C 0.51 18.83 5.49 71.24 0.39 19.22 16 25 O -0.57 -24.46 15.63 28.44 0.44 -24.01 16 26 O -0.52 -17.50 13.42 -48.57 -0.65 -18.15 16 27 C -0.12 -6.82 8.20 23.01 0.19 -6.63 16 28 H 0.28 14.93 8.30 -92.71 -0.77 14.16 16 29 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 30 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 31 H 0.14 4.87 5.30 -2.91 -0.02 4.86 16 32 H 0.08 1.86 8.11 -2.38 -0.02 1.84 16 33 H 0.12 3.45 3.68 -2.74 -0.01 3.44 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.13 2.64 8.05 -2.39 -0.02 2.62 16 41 H 0.11 3.93 5.99 -2.97 -0.02 3.91 16 42 H 0.41 10.84 9.10 -74.06 -0.67 10.17 16 43 H 0.10 5.96 6.15 -2.91 -0.02 5.94 16 Total: -1.00 -75.13 341.44 3.70 -71.43 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: 0.37 Total: 40.94 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 3.40 Total: -14.41 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -2.10 Total: -69.40 kcal Atomic # 8 Polarization: -70.58 SS G_CDS: -0.01 Total: -70.58 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -75.13 3.70 -71.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611526491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.786 kcal (2) G-P(sol) polarization free energy of solvation -75.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds