Wall clock time and date at job start Tue Mar 31 2020 11:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21245 * 120.00384 * 2 1 4 4 C 1.47188 * 119.99817 * 179.97438 * 2 1 3 5 5 C 1.39623 * 120.10428 * 358.80255 * 4 2 1 6 6 C 1.39226 * 119.68050 * 180.20382 * 5 4 2 7 7 C 1.47863 * 120.06026 * 179.79765 * 6 5 4 8 8 O 1.21553 * 120.00131 * 25.84705 * 7 6 5 9 9 N 1.34777 * 119.99702 * 205.85202 * 7 6 5 10 10 C 1.47417 * 125.65226 * 355.92417 * 9 7 6 11 11 C 1.54906 * 104.83584 * 155.91112 * 10 9 7 12 12 C 1.55157 * 101.58123 * 37.00869 * 11 10 9 13 13 O 1.42893 * 110.72221 * 83.04031 * 12 11 10 14 14 C 1.50707 * 110.72064 * 206.13770 * 12 11 10 15 15 H 1.08003 * 119.99518 * 357.55711 * 14 12 11 16 16 C 1.37877 * 119.99894 * 177.28270 * 14 12 11 17 17 N 1.31507 * 120.00042 * 0.27361 * 16 14 12 18 18 Si 1.86799 * 119.99586 * 180.27541 * 16 14 12 19 19 H 1.48499 * 109.47419 * 60.00532 * 18 16 14 20 20 H 1.48504 * 109.47105 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47480 * 299.99795 * 18 16 14 22 22 C 1.47320 * 125.61334 * 176.14769 * 9 7 6 23 23 C 1.39744 * 119.87624 * 359.51692 * 6 5 4 24 24 C 1.38093 * 120.20409 * 0.25395 * 23 6 5 25 25 C 1.38029 * 120.32780 * 0.02562 * 24 23 6 26 26 C 1.50704 * 119.94318 * 179.97438 * 25 24 23 27 27 H 1.09002 * 109.46770 * 240.00063 * 1 2 3 28 28 H 1.08994 * 109.46861 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47145 * 120.00295 * 1 2 3 30 30 H 1.07996 * 120.15651 * 359.97438 * 5 4 2 31 31 H 1.08997 * 110.36798 * 37.06819 * 10 9 7 32 32 H 1.09001 * 110.36607 * 274.74885 * 10 9 7 33 33 H 1.09004 * 111.00214 * 278.93471 * 11 10 9 34 34 H 1.08996 * 111.04127 * 155.09866 * 11 10 9 35 35 H 0.96696 * 114.00436 * 182.43701 * 13 12 11 36 36 H 0.97001 * 120.00237 * 180.02562 * 17 16 14 37 37 H 1.09008 * 110.06112 * 61.67625 * 22 9 7 38 38 H 1.09004 * 109.85083 * 300.41935 * 22 9 7 39 39 H 1.08003 * 119.89189 * 180.23104 * 23 6 5 40 40 H 1.08005 * 119.83452 * 179.97438 * 24 23 6 41 41 H 1.09002 * 109.46648 * 97.61876 * 26 25 24 42 42 H 1.08999 * 109.46927 * 217.62171 * 26 25 24 43 43 H 1.09003 * 109.46751 * 337.62205 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5472 -2.4850 0.0264 6 6 2.2523 -3.6855 0.0310 7 6 1.5241 -4.9720 0.0627 8 8 0.3921 -5.0407 -0.3749 9 7 2.1154 -6.0685 0.5770 10 6 3.5054 -6.1477 1.0615 11 6 3.5073 -7.3229 2.0708 12 6 2.5270 -8.3167 1.3936 13 8 3.1999 -9.0931 0.4005 14 6 1.8810 -9.2114 2.4200 15 1 2.1591 -9.1282 3.4603 16 6 0.9311 -10.1322 2.0317 17 7 0.5927 -10.2335 0.7649 18 14 0.1250 -11.2359 3.3050 19 1 -0.5766 -10.3998 4.3119 20 1 -0.8532 -12.1310 2.6361 21 1 1.1641 -12.0550 3.9792 22 6 1.4804 -7.3873 0.7435 23 6 3.6493 -3.6724 -0.0004 24 6 4.3323 -2.4726 -0.0306 25 6 3.6419 -1.2774 -0.0296 26 6 4.3961 0.0269 -0.0622 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 0.4674 -2.4897 0.0464 31 1 3.7872 -5.2198 1.5591 32 1 4.1841 -6.3569 0.2346 33 1 3.1308 -7.0037 3.0427 34 1 4.5025 -7.7577 2.1633 35 1 2.6234 -9.7040 -0.0786 36 1 -0.0759 -10.8810 0.4918 37 1 1.1839 -7.7848 -0.2273 38 1 0.6089 -7.2993 1.3922 39 1 4.1964 -4.6036 -0.0006 40 1 5.4121 -2.4695 -0.0544 41 1 4.4373 0.3973 -1.0866 42 1 3.8875 0.7565 0.5679 43 1 5.4092 -0.1298 0.3084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000649029733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:54 Heat of formation + Delta-G solvation = -85.317066 kcal Electronic energy + Delta-G solvation = -26518.005402 eV Core-core repulsion = 22721.552962 eV Total energy + Delta-G solvation = -3796.452440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.64122 -39.56858 -38.04228 -37.15034 -34.51728 -32.96745 -32.26521 -32.25713 -30.15241 -29.61750 -28.20260 -27.29782 -25.24120 -23.84402 -23.25884 -21.64540 -20.51484 -19.75019 -19.07182 -17.33438 -17.11462 -16.14760 -15.81897 -15.61266 -15.47652 -15.29994 -14.91646 -14.68184 -14.38370 -14.12081 -13.90845 -13.61816 -13.26691 -13.02486 -12.96389 -12.59481 -12.36948 -12.30124 -12.20342 -12.15576 -12.06399 -11.59749 -11.50227 -11.38668 -11.06430 -10.79346 -10.74244 -10.56439 -10.24196 -9.72934 -9.50275 -9.40142 -9.17200 -8.87081 -8.72205 -8.39159 -8.00996 -6.34229 -4.43176 0.43648 0.93061 2.13800 3.06353 3.18879 3.25084 3.26586 3.43104 3.78194 3.85859 4.22497 4.54941 4.55927 4.75167 4.84277 4.92958 4.95587 5.08064 5.19995 5.23811 5.28819 5.41036 5.47956 5.56956 5.59139 5.68063 5.72021 5.81240 5.84683 5.88519 6.02499 6.11982 6.18728 6.33478 6.40364 6.60994 6.67758 6.75706 6.85265 7.18029 7.29652 7.32162 7.67541 7.93326 8.07068 8.55154 8.61476 9.24258 9.33747 10.73560 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.003093 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.520516 B = 9049.987510 C = 9675.907416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.400 3.600 3 O -0.458 6.458 4 C -0.190 4.190 5 C -0.013 4.013 6 C -0.139 4.139 7 C 0.561 3.439 8 O -0.546 6.546 9 N -0.603 5.603 10 C 0.091 3.909 11 C -0.119 4.119 12 C 0.248 3.752 13 O -0.585 6.585 14 C -0.540 4.540 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.895 5.895 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.103 3.897 23 C -0.064 4.064 24 C -0.144 4.144 25 C -0.008 4.008 26 C -0.129 4.129 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.142 0.858 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.385 0.615 36 H 0.272 0.728 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.149 0.851 40 H 0.134 0.866 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.376 15.832 -1.037 16.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.280 3.720 3 O -0.335 6.335 4 C -0.191 4.191 5 C -0.032 4.032 6 C -0.142 4.142 7 C 0.349 3.651 8 O -0.426 6.426 9 N -0.335 5.335 10 C -0.031 4.031 11 C -0.157 4.157 12 C 0.208 3.792 13 O -0.395 6.395 14 C -0.578 4.578 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.534 5.534 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.018 4.018 23 C -0.083 4.083 24 C -0.162 4.162 25 C -0.009 4.009 26 C -0.185 4.185 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.160 0.840 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.236 0.764 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.167 0.833 40 H 0.152 0.848 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.432 16.610 -1.211 17.517 hybrid contribution -1.061 -1.225 0.365 1.661 sum 4.371 15.385 -0.846 16.016 Atomic orbital electron populations 1.22282 0.93593 1.05092 1.05025 1.22429 0.91673 0.87349 0.70579 1.90457 1.71438 1.34516 1.37122 1.20254 0.93948 0.94637 1.10302 1.21502 1.00624 0.89867 0.91245 1.20010 0.93927 0.93965 1.06259 1.17842 0.85797 0.82724 0.78721 1.90758 1.18738 1.85203 1.47909 1.48771 1.13742 1.11396 1.59554 1.22717 0.83506 0.99365 0.97545 1.22795 1.01136 0.94403 0.97354 1.19487 0.86534 0.87345 0.85849 1.86083 1.41394 1.57606 1.54407 1.21474 1.22573 1.19367 0.94390 0.91522 1.25072 0.95643 0.96727 0.95790 1.69625 1.32542 1.36011 1.15181 0.86445 0.79054 0.80182 0.81152 1.20004 1.21044 1.19961 1.23149 0.97874 0.79295 1.01476 1.22295 0.93568 0.99709 0.92678 1.21045 1.00382 0.91280 1.03473 1.20396 0.92503 0.96178 0.91826 1.21206 0.99168 0.94436 1.03640 0.88643 0.89666 0.88546 0.83987 0.91121 0.91183 0.90352 0.90309 0.76411 0.91827 0.91350 0.91310 0.83343 0.84820 0.90597 0.88465 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.64 8.93 36.01 0.32 -1.32 16 2 C 0.40 4.40 7.20 -30.67 -0.22 4.18 16 3 O -0.46 -5.88 13.96 5.59 0.08 -5.80 16 4 C -0.19 -2.28 5.86 -105.11 -0.62 -2.89 16 5 C -0.01 -0.18 9.01 -38.70 -0.35 -0.52 16 6 C -0.14 -2.08 5.72 -105.03 -0.60 -2.68 16 7 C 0.56 10.79 7.66 -12.32 -0.09 10.69 16 8 O -0.55 -12.29 16.95 5.32 0.09 -12.20 16 9 N -0.60 -11.83 3.33 -171.39 -0.57 -12.40 16 10 C 0.09 1.49 5.00 -2.53 -0.01 1.47 16 11 C -0.12 -2.22 6.23 -24.58 -0.15 -2.38 16 12 C 0.25 5.75 0.85 -89.93 -0.08 5.67 16 13 O -0.59 -14.15 13.08 -35.23 -0.46 -14.62 16 14 C -0.54 -13.65 8.11 -34.44 -0.28 -13.93 16 15 H 0.07 1.65 7.77 -52.48 -0.41 1.25 16 16 C 0.07 1.81 5.27 -17.82 -0.09 1.71 16 17 N -0.89 -23.23 10.96 55.43 0.61 -22.62 16 18 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 C 0.10 2.40 5.39 -2.90 -0.02 2.38 16 23 C -0.06 -0.81 7.94 -39.07 -0.31 -1.12 16 24 C -0.14 -1.54 9.64 -39.71 -0.38 -1.93 16 25 C -0.01 -0.10 5.93 -104.06 -0.62 -0.71 16 26 C -0.13 -1.26 8.81 36.01 0.32 -0.94 16 27 H 0.10 0.68 8.05 -51.93 -0.42 0.26 16 28 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.10 0.70 8.11 -51.93 -0.42 0.28 16 30 H 0.14 1.76 6.84 -52.49 -0.36 1.40 16 31 H 0.07 0.95 6.06 -51.93 -0.31 0.63 16 32 H 0.07 1.08 7.33 -51.93 -0.38 0.69 16 33 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.38 9.62 7.24 45.56 0.33 9.95 16 36 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.07 1.75 8.00 -51.92 -0.42 1.33 16 38 H 0.07 1.74 7.81 -51.93 -0.41 1.34 16 39 H 0.15 1.74 4.42 -52.48 -0.23 1.51 16 40 H 0.13 1.08 8.05 -52.48 -0.42 0.66 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.10 1.06 5.69 -51.93 -0.30 0.77 16 43 H 0.06 0.49 8.02 -51.93 -0.42 0.07 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -29.64 350.84 -8.15 -37.79 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -4.98 Total: 11.90 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.18 Total: -2.31 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.04 Total: -35.02 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.29 Total: -32.61 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.64 -8.15 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000649029733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.524 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds