Wall clock time and date at job start Tue Mar 31 2020 11:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21245 * 120.00384 * 2 1 4 4 C 1.47188 * 119.99817 * 179.97438 * 2 1 3 5 5 C 1.39623 * 120.10428 * 358.80255 * 4 2 1 6 6 C 1.39226 * 119.68050 * 180.20382 * 5 4 2 7 7 C 1.47863 * 120.06026 * 179.79765 * 6 5 4 8 8 O 1.21553 * 120.00131 * 25.84705 * 7 6 5 9 9 N 1.34777 * 119.99702 * 205.85202 * 7 6 5 10 10 C 1.47417 * 125.65226 * 355.92417 * 9 7 6 11 11 C 1.54906 * 104.83584 * 155.91112 * 10 9 7 12 12 C 1.55157 * 101.58123 * 37.00869 * 11 10 9 13 13 O 1.42893 * 110.72221 * 83.04031 * 12 11 10 14 14 C 1.50707 * 110.72064 * 206.13770 * 12 11 10 15 15 H 1.08003 * 119.99518 * 357.55711 * 14 12 11 16 16 C 1.37877 * 119.99894 * 177.28270 * 14 12 11 17 17 N 1.31507 * 120.00042 * 0.27361 * 16 14 12 18 18 Si 1.86799 * 119.99586 * 180.27541 * 16 14 12 19 19 H 1.48499 * 109.47419 * 60.00532 * 18 16 14 20 20 H 1.48504 * 109.47105 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47480 * 299.99795 * 18 16 14 22 22 C 1.47320 * 125.61334 * 176.14769 * 9 7 6 23 23 C 1.39744 * 119.87624 * 359.51692 * 6 5 4 24 24 C 1.38093 * 120.20409 * 0.25395 * 23 6 5 25 25 C 1.38029 * 120.32780 * 0.02562 * 24 23 6 26 26 C 1.50704 * 119.94318 * 179.97438 * 25 24 23 27 27 H 1.09002 * 109.46770 * 240.00063 * 1 2 3 28 28 H 1.08994 * 109.46861 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47145 * 120.00295 * 1 2 3 30 30 H 1.07996 * 120.15651 * 359.97438 * 5 4 2 31 31 H 1.08997 * 110.36798 * 37.06819 * 10 9 7 32 32 H 1.09001 * 110.36607 * 274.74885 * 10 9 7 33 33 H 1.09004 * 111.00214 * 278.93471 * 11 10 9 34 34 H 1.08996 * 111.04127 * 155.09866 * 11 10 9 35 35 H 0.96696 * 114.00436 * 182.43701 * 13 12 11 36 36 H 0.97001 * 120.00237 * 180.02562 * 17 16 14 37 37 H 1.09008 * 110.06112 * 61.67625 * 22 9 7 38 38 H 1.09004 * 109.85083 * 300.41935 * 22 9 7 39 39 H 1.08003 * 119.89189 * 180.23104 * 23 6 5 40 40 H 1.08005 * 119.83452 * 179.97438 * 24 23 6 41 41 H 1.09002 * 109.46648 * 97.61876 * 26 25 24 42 42 H 1.08999 * 109.46927 * 217.62171 * 26 25 24 43 43 H 1.09003 * 109.46751 * 337.62205 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5472 -2.4850 0.0264 6 6 2.2523 -3.6855 0.0310 7 6 1.5241 -4.9720 0.0627 8 8 0.3921 -5.0407 -0.3749 9 7 2.1154 -6.0685 0.5770 10 6 3.5054 -6.1477 1.0615 11 6 3.5073 -7.3229 2.0708 12 6 2.5270 -8.3167 1.3936 13 8 3.1999 -9.0931 0.4005 14 6 1.8810 -9.2114 2.4200 15 1 2.1591 -9.1282 3.4603 16 6 0.9311 -10.1322 2.0317 17 7 0.5927 -10.2335 0.7649 18 14 0.1250 -11.2359 3.3050 19 1 -0.5766 -10.3998 4.3119 20 1 -0.8532 -12.1310 2.6361 21 1 1.1641 -12.0550 3.9792 22 6 1.4804 -7.3873 0.7435 23 6 3.6493 -3.6724 -0.0004 24 6 4.3323 -2.4726 -0.0306 25 6 3.6419 -1.2774 -0.0296 26 6 4.3961 0.0269 -0.0622 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 0.4674 -2.4897 0.0464 31 1 3.7872 -5.2198 1.5591 32 1 4.1841 -6.3569 0.2346 33 1 3.1308 -7.0037 3.0427 34 1 4.5025 -7.7577 2.1633 35 1 2.6234 -9.7040 -0.0786 36 1 -0.0759 -10.8810 0.4918 37 1 1.1839 -7.7848 -0.2273 38 1 0.6089 -7.2993 1.3922 39 1 4.1964 -4.6036 -0.0006 40 1 5.4121 -2.4695 -0.0544 41 1 4.4373 0.3973 -1.0866 42 1 3.8875 0.7565 0.5679 43 1 5.4092 -0.1298 0.3084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000649029733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:53 Heat of formation + Delta-G solvation = -104.335279 kcal Electronic energy + Delta-G solvation = -26518.830094 eV Core-core repulsion = 22721.552962 eV Total energy + Delta-G solvation = -3797.277132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75605 -40.82511 -39.28274 -38.63232 -36.22601 -34.21186 -33.94852 -33.22660 -31.72425 -30.43478 -29.75586 -28.45002 -26.91366 -24.93550 -24.61340 -22.72563 -21.56437 -21.46277 -20.35646 -19.13833 -18.39609 -17.47539 -17.10973 -16.92827 -16.64815 -16.57180 -16.14336 -16.11378 -15.76083 -15.14463 -14.98910 -14.79939 -14.74258 -14.62323 -14.38213 -13.81209 -13.59756 -13.41667 -13.25737 -13.11163 -13.03022 -12.93315 -12.89473 -12.77955 -12.54827 -12.33505 -12.31778 -12.24168 -12.06840 -11.16697 -11.11484 -10.65038 -10.49583 -10.29728 -10.11197 -9.92190 -9.59259 -8.27646 -6.43481 -0.50193 -0.08987 1.23219 1.42463 1.43335 1.51053 1.77253 1.97710 2.37507 2.69395 2.99021 3.03216 3.36931 3.66386 3.73759 3.84886 3.95706 4.06646 4.14712 4.18514 4.23300 4.31852 4.51667 4.53588 4.58863 4.59964 4.65674 4.68957 4.81015 4.87995 4.98644 5.01492 5.09086 5.10385 5.17575 5.21198 5.25795 5.35263 5.47414 5.50125 5.72543 5.73896 6.03828 6.47471 6.54649 6.64721 7.04704 7.27481 7.35285 8.78168 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.003093 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.520516 B = 9049.987510 C = 9675.907416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.400 3.600 3 O -0.478 6.478 4 C -0.196 4.196 5 C -0.014 4.014 6 C -0.160 4.160 7 C 0.557 3.443 8 O -0.592 6.592 9 N -0.608 5.608 10 C 0.096 3.904 11 C -0.114 4.114 12 C 0.233 3.767 13 O -0.587 6.587 14 C -0.559 4.559 15 H 0.068 0.932 16 C 0.026 3.974 17 N -0.916 5.916 18 Si 0.962 3.038 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.268 1.268 22 C 0.120 3.880 23 C -0.062 4.062 24 C -0.132 4.132 25 C -0.009 4.009 26 C -0.126 4.126 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.142 0.858 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.377 0.623 36 H 0.270 0.730 37 H 0.033 0.967 38 H 0.035 0.965 39 H 0.159 0.841 40 H 0.170 0.830 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.463 17.474 -0.226 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.281 3.719 3 O -0.356 6.356 4 C -0.197 4.197 5 C -0.033 4.033 6 C -0.163 4.163 7 C 0.348 3.652 8 O -0.475 6.475 9 N -0.339 5.339 10 C -0.025 4.025 11 C -0.152 4.152 12 C 0.193 3.807 13 O -0.395 6.395 14 C -0.597 4.597 15 H 0.086 0.914 16 C -0.175 4.175 17 N -0.556 5.556 18 Si 0.787 3.213 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.193 1.193 22 C -0.003 4.003 23 C -0.080 4.080 24 C -0.149 4.149 25 C -0.009 4.009 26 C -0.181 4.181 27 H 0.124 0.876 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.160 0.840 31 H 0.127 0.873 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.227 0.773 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.177 0.823 40 H 0.188 0.812 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.556 18.268 -0.385 19.773 hybrid contribution -1.696 -1.658 0.085 2.373 sum 5.860 16.611 -0.300 17.617 Atomic orbital electron populations 1.22310 0.91552 1.06029 1.05892 1.22709 0.92796 0.86643 0.69704 1.90459 1.72065 1.34913 1.38175 1.20414 0.94640 0.94455 1.10193 1.21509 1.00806 0.89835 0.91154 1.19713 0.95010 0.91870 1.09687 1.18569 0.85469 0.83813 0.77346 1.90718 1.20948 1.86041 1.49777 1.48795 1.15000 1.10192 1.59929 1.22926 0.81711 1.00180 0.97674 1.22799 1.00653 0.93929 0.97794 1.19700 0.87885 0.87651 0.85460 1.86071 1.41288 1.57574 1.54609 1.21840 1.22950 1.19938 0.95002 0.91387 1.25801 0.96221 0.98064 0.97376 1.69735 1.32847 1.36433 1.16540 0.85541 0.78192 0.78518 0.79003 1.19809 1.21058 1.19267 1.22632 0.97312 0.81624 0.98688 1.22380 0.92260 1.01033 0.92289 1.21374 1.02031 0.89937 1.01571 1.20774 0.92401 0.97352 0.90406 1.21208 1.00130 0.93132 1.03669 0.87622 0.88734 0.87696 0.84010 0.87274 0.89618 0.89805 0.88696 0.77336 0.92018 0.94864 0.94614 0.82339 0.81222 0.90299 0.89644 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.97 8.93 71.24 0.64 -2.33 16 2 C 0.40 8.21 7.20 28.04 0.20 8.41 16 3 O -0.48 -11.52 13.96 -2.92 -0.04 -11.56 16 4 C -0.20 -4.32 5.86 -20.18 -0.12 -4.44 16 5 C -0.01 -0.35 9.01 22.84 0.21 -0.15 16 6 C -0.16 -4.62 5.72 -20.13 -0.12 -4.74 16 7 C 0.56 21.72 7.66 86.79 0.66 22.38 16 8 O -0.59 -27.81 16.95 -3.88 -0.07 -27.88 16 9 N -0.61 -23.98 3.33 -814.43 -2.71 -26.69 16 10 C 0.10 2.92 5.00 86.86 0.43 3.36 16 11 C -0.11 -4.08 6.23 31.98 0.20 -3.88 16 12 C 0.23 10.92 0.85 -10.35 -0.01 10.91 16 13 O -0.59 -28.76 13.08 -148.98 -1.95 -30.70 16 14 C -0.56 -28.64 8.11 25.60 0.21 -28.43 16 15 H 0.07 3.37 7.77 -2.91 -0.02 3.35 16 16 C 0.03 1.36 5.27 84.66 0.45 1.80 16 17 N -0.92 -49.16 10.96 21.45 0.24 -48.92 16 18 Si 0.96 41.37 29.54 68.60 2.03 43.40 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 C 0.12 5.84 5.39 86.67 0.47 6.31 16 23 C -0.06 -1.35 7.94 22.60 0.18 -1.17 16 24 C -0.13 -2.27 9.64 22.19 0.21 -2.06 16 25 C -0.01 -0.17 5.93 -19.50 -0.12 -0.29 16 26 C -0.13 -2.04 8.81 71.24 0.63 -1.41 16 27 H 0.11 1.36 8.05 -2.39 -0.02 1.34 16 28 H 0.09 1.23 8.12 -2.39 -0.02 1.21 16 29 H 0.10 1.39 8.11 -2.39 -0.02 1.37 16 30 H 0.14 3.51 6.84 -2.91 -0.02 3.49 16 31 H 0.11 2.52 6.06 -2.39 -0.01 2.50 16 32 H 0.09 2.37 7.33 -2.39 -0.02 2.36 16 33 H 0.08 2.89 8.03 -2.39 -0.02 2.87 16 34 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.38 19.52 7.24 -74.06 -0.54 18.98 16 36 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 37 H 0.03 1.80 8.00 -2.38 -0.02 1.78 16 38 H 0.04 1.92 7.81 -2.39 -0.02 1.90 16 39 H 0.16 3.13 4.42 -2.91 -0.01 3.11 16 40 H 0.17 1.74 8.05 -2.91 -0.02 1.72 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.09 1.66 5.69 -2.39 -0.01 1.65 16 43 H 0.09 0.99 8.02 -2.39 -0.02 0.97 16 Total: -1.00 -66.88 350.84 2.14 -64.75 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.52 Total: 33.35 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 4.13 Total: 4.26 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -2.48 Total: -75.61 kcal Atomic # 8 Polarization: -68.09 SS G_CDS: -2.05 Total: -70.14 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -66.88 2.14 -64.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000649029733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.588 kcal (2) G-P(sol) polarization free energy of solvation -66.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds