Wall clock time and date at job start Tue Mar 31 2020 11:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 120.00257 * 2 1 4 4 C 1.38233 * 120.00037 * 180.27927 * 3 2 1 5 5 C 1.50693 * 120.00207 * 179.72405 * 4 3 2 6 6 C 1.38238 * 119.99752 * 359.47832 * 4 3 2 7 7 C 1.38234 * 120.00033 * 0.49775 * 6 4 3 8 8 C 1.50706 * 120.00194 * 179.76134 * 7 6 4 9 9 C 1.50701 * 115.55079 * 214.35159 * 8 7 6 10 10 O 1.20824 * 119.99654 * 145.58418 * 9 8 7 11 11 O 1.34224 * 119.99865 * 325.58239 * 9 8 7 12 12 C 1.45203 * 117.00045 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47218 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00603 * 0.02562 * 13 12 11 15 15 N 1.34788 * 119.99685 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99513 * 180.02562 * 15 13 12 17 17 H 1.07993 * 119.99927 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99511 * 179.97438 * 16 15 13 19 19 N 1.31409 * 119.99844 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00045 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47307 * 90.00129 * 20 18 16 22 22 H 1.48508 * 109.46946 * 209.99852 * 20 18 16 23 23 H 1.48500 * 109.47192 * 329.99587 * 20 18 16 24 24 C 1.52999 * 117.49669 * 68.64458 * 8 7 6 25 25 C 1.52997 * 117.49808 * 0.02562 * 8 7 6 26 26 C 1.38234 * 119.99503 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46667 * 90.00245 * 1 2 3 28 28 H 1.08995 * 109.47941 * 210.00326 * 1 2 3 29 29 H 1.09000 * 109.47013 * 330.00974 * 1 2 3 30 30 H 1.08002 * 119.99744 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.47363 * 89.99511 * 5 4 3 32 32 H 1.09000 * 109.47097 * 209.99342 * 5 4 3 33 33 H 1.09001 * 109.47081 * 329.99847 * 5 4 3 34 34 H 1.07999 * 119.99934 * 180.25938 * 6 4 3 35 35 H 1.09002 * 109.46887 * 300.00221 * 12 11 9 36 36 H 1.09000 * 109.46612 * 59.99780 * 12 11 9 37 37 H 0.96998 * 119.99726 * 0.02562 * 15 13 12 38 38 H 0.97003 * 119.99772 * 179.97438 * 19 18 16 39 39 H 1.09001 * 117.49894 * 359.97438 * 24 8 7 40 40 H 1.08998 * 117.50171 * 145.02254 * 24 8 7 41 41 H 1.08994 * 117.50332 * 214.98124 * 25 8 7 42 42 H 1.09009 * 117.49641 * 359.97438 * 25 8 7 43 43 H 1.08005 * 120.00204 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0058 5 6 4.3341 2.5021 -0.0121 6 6 4.2717 -0.0001 -0.0008 7 6 3.5805 -1.1973 -0.0003 8 6 4.3339 -2.5025 -0.0002 9 6 3.6865 -3.6268 -0.7669 10 8 4.3715 -4.4315 -1.3526 11 8 2.3489 -3.7341 -0.7991 12 6 1.7945 -4.8419 -1.5565 13 6 0.2902 -4.8008 -1.4786 14 8 -0.2607 -3.9239 -0.8473 15 7 -0.4433 -5.7380 -2.1115 16 6 -1.8119 -5.7002 -2.0410 17 1 -2.3023 -4.9199 -1.4781 18 6 -2.5680 -6.6661 -2.6938 19 7 -3.8799 -6.6302 -2.6259 20 14 -1.7197 -8.0163 -3.6668 21 1 -1.4586 -9.1772 -2.7785 22 1 -2.5929 -8.4397 -4.7909 23 1 -0.4333 -7.5053 -4.2046 24 6 5.1155 -2.8669 1.2636 25 6 5.8624 -2.4358 -0.0001 26 6 2.1981 -1.1972 -0.0005 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3635 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5137 30 1 1.6582 2.1324 -0.0004 31 1 4.5201 2.8192 1.0140 32 1 5.2844 2.3704 -0.5296 33 1 3.7429 3.2605 -0.5253 34 1 5.3517 -0.0002 -0.0011 35 1 2.1072 -4.7626 -2.5978 36 1 2.1540 -5.7828 -1.1399 37 1 -0.0027 -6.4391 -2.6167 38 1 -4.4077 -7.3043 -3.0819 39 1 5.0851 -2.1624 2.0949 40 1 5.1615 -3.9200 1.5409 41 1 6.3999 -3.2052 -0.5543 42 1 6.3231 -1.4478 -0.0005 43 1 1.6580 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731242922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:51 Heat of formation + Delta-G solvation = -89.084090 kcal Electronic energy + Delta-G solvation = -26256.965423 eV Core-core repulsion = 22460.349632 eV Total energy + Delta-G solvation = -3796.615791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.13865 -40.64315 -40.12069 -38.35558 -37.20549 -36.09207 -34.36028 -33.87858 -32.47479 -30.47711 -28.18004 -27.76681 -26.80408 -25.68653 -23.54909 -23.19493 -21.61163 -21.48896 -20.73629 -20.53787 -18.73988 -18.01722 -17.82567 -17.46824 -17.19631 -16.78491 -16.26131 -15.97046 -15.54926 -15.54002 -14.98523 -14.88774 -14.71044 -14.29960 -14.09994 -14.05631 -13.98443 -13.88888 -13.46036 -13.26712 -13.02934 -12.90172 -12.75031 -12.48301 -12.45965 -12.30938 -12.03115 -11.94645 -11.81421 -11.65056 -11.60356 -11.56837 -11.49527 -10.60143 -10.35452 -9.46551 -9.41214 -8.47796 -6.10438 0.33302 0.47557 0.92544 1.24777 1.29426 1.30974 1.42081 1.73644 2.17811 2.56802 2.73527 2.91858 3.06432 3.33544 3.50728 3.60392 3.84233 3.90221 3.94755 4.02554 4.05527 4.07899 4.30384 4.41039 4.48272 4.58389 4.64928 4.73289 4.75735 4.79739 4.88641 4.92645 5.02337 5.07975 5.12438 5.17696 5.30357 5.38085 5.45520 5.65994 5.67435 5.79934 5.83799 6.14886 6.43143 6.55991 6.75559 7.23801 7.75272 8.68837 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.003466 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.428129 B = 8076.557042 C = 9459.570326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.128 4.128 4 C -0.087 4.087 5 C -0.108 4.108 6 C -0.120 4.120 7 C -0.053 4.053 8 C -0.129 4.129 9 C 0.497 3.503 10 O -0.524 6.524 11 O -0.332 6.332 12 C 0.059 3.941 13 C 0.450 3.550 14 O -0.599 6.599 15 N -0.577 5.577 16 C -0.331 4.331 17 H 0.062 0.938 18 C -0.007 4.007 19 N -0.925 5.925 20 Si 0.960 3.040 21 H -0.255 1.255 22 H -0.271 1.271 23 H -0.234 1.234 24 C -0.123 4.123 25 C -0.115 4.115 26 C -0.139 4.139 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.154 0.846 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.392 0.608 38 H 0.282 0.718 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.142 0.858 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.110 12.252 4.635 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.087 4.087 5 C -0.164 4.164 6 C -0.138 4.138 7 C -0.053 4.053 8 C -0.130 4.130 9 C 0.342 3.658 10 O -0.414 6.414 11 O -0.247 6.247 12 C -0.018 4.018 13 C 0.237 3.763 14 O -0.483 6.483 15 N -0.219 5.219 16 C -0.460 4.460 17 H 0.080 0.920 18 C -0.207 4.207 19 N -0.565 5.565 20 Si 0.779 3.221 21 H -0.179 1.179 22 H -0.196 1.196 23 H -0.158 1.158 24 C -0.160 4.160 25 C -0.151 4.151 26 C -0.157 4.157 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.156 0.844 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.172 0.828 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.228 0.772 38 H 0.092 0.908 39 H 0.149 0.851 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.160 0.840 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 22.696 12.502 4.822 26.356 hybrid contribution -0.962 -1.398 -0.802 1.877 sum 21.734 11.104 4.020 24.735 Atomic orbital electron populations 1.20737 0.91450 1.02590 1.01992 1.20070 0.96324 0.93452 0.99443 1.21190 0.94421 0.97261 1.01677 1.20208 0.93447 0.96503 0.98497 1.20813 1.00023 0.92235 1.03368 1.21090 1.00915 0.90161 1.01616 1.18764 0.92404 0.92364 1.01762 1.19781 0.95759 0.90937 1.06498 1.22969 0.80175 0.84742 0.77922 1.90616 1.64273 1.43125 1.43404 1.86655 1.23220 1.48154 1.66665 1.22677 0.90474 0.90199 0.98427 1.20061 0.88718 0.83919 0.83629 1.90576 1.73729 1.38264 1.45683 1.41811 1.05977 1.26848 1.47292 1.18994 0.80569 1.13719 1.32683 0.92000 1.26054 0.95927 1.00493 0.98206 1.69778 1.06313 1.36715 1.43685 0.85442 0.79621 0.78310 0.78709 1.17896 1.19596 1.15754 1.23379 0.97478 1.04177 0.90926 1.23441 0.86793 1.05831 0.99069 1.21517 0.94579 0.98837 1.00767 0.92171 0.93520 0.89504 0.84360 0.89893 0.90126 0.90942 0.82816 0.87150 0.86633 0.77245 0.90828 0.85085 0.87415 0.86932 0.84021 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.43 10.01 71.24 0.71 -2.72 16 2 C -0.09 -2.82 5.88 -19.87 -0.12 -2.93 16 3 C -0.13 -3.00 9.36 22.27 0.21 -2.79 16 4 C -0.09 -1.69 5.88 -19.87 -0.12 -1.80 16 5 C -0.11 -1.25 10.01 71.23 0.71 -0.54 16 6 C -0.12 -2.40 9.05 22.27 0.20 -2.20 16 7 C -0.05 -1.39 5.44 -19.86 -0.11 -1.50 16 8 C -0.13 -3.12 2.50 -53.67 -0.13 -3.26 16 9 C 0.50 15.71 7.46 71.24 0.53 16.24 16 10 O -0.52 -17.25 16.01 21.97 0.35 -16.89 16 11 O -0.33 -12.29 6.43 -45.01 -0.29 -12.58 16 12 C 0.06 2.12 5.94 71.23 0.42 2.54 16 13 C 0.45 21.19 7.86 87.65 0.69 21.88 16 14 O -0.60 -33.84 16.08 15.76 0.25 -33.58 16 15 N -0.58 -27.60 5.09 -306.99 -1.56 -29.17 16 16 C -0.33 -19.29 10.16 84.04 0.85 -18.44 16 17 H 0.06 4.27 7.39 -2.91 -0.02 4.25 16 18 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 19 N -0.93 -55.03 13.96 21.66 0.30 -54.72 16 20 Si 0.96 38.52 27.74 68.60 1.90 40.42 16 21 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 22 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.23 -8.04 6.52 99.48 0.65 -7.39 16 24 C -0.12 -2.08 9.94 30.59 0.30 -1.77 16 25 C -0.12 -1.79 9.38 30.59 0.29 -1.50 16 26 C -0.14 -4.64 8.73 22.27 0.19 -4.45 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 1.68 8.09 -2.39 -0.02 1.66 16 29 H 0.09 2.11 8.09 -2.39 -0.02 2.09 16 30 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 33 H 0.07 0.76 8.09 -2.39 -0.02 0.75 16 34 H 0.15 1.95 5.93 -2.91 -0.02 1.93 16 35 H 0.11 3.45 8.13 -2.39 -0.02 3.43 16 36 H 0.12 3.49 8.13 -2.39 -0.02 3.47 16 37 H 0.39 15.54 5.76 -92.71 -0.53 15.01 16 38 H 0.28 15.28 8.31 -92.71 -0.77 14.50 16 39 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.11 1.84 7.67 -2.39 -0.02 1.82 16 42 H 0.14 1.33 6.08 -2.38 -0.01 1.32 16 43 H 0.12 4.89 5.29 -2.91 -0.02 4.88 16 Total: -1.00 -78.09 364.80 6.52 -71.57 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: 0.45 Total: 38.11 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.11 Total: -3.15 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -1.26 Total: -83.89 kcal Atomic # 8 Polarization: -63.37 SS G_CDS: 0.32 Total: -63.06 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -78.09 6.52 -71.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.517 kcal (2) G-P(sol) polarization free energy of solvation -78.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds