Wall clock time and date at job start Tue Mar 31 2020 11:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47097 * 299.99302 * 3 2 1 6 6 H 1.48502 * 109.47583 * 59.99876 * 3 2 1 7 7 C 1.39934 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00114 * 197.86007 * 7 2 1 9 9 C 1.41436 * 120.00211 * 17.86118 * 7 2 1 10 10 C 1.40792 * 120.17621 * 204.39095 * 9 7 2 11 11 C 1.37718 * 120.05257 * 180.02562 * 10 9 7 12 12 C 1.38353 * 120.41757 * 359.97438 * 11 10 9 13 13 C 1.39924 * 120.35413 * 0.02562 * 12 11 10 14 14 C 1.47768 * 120.03227 * 180.02562 * 13 12 11 15 15 O 1.21464 * 120.00223 * 179.97438 * 14 13 12 16 16 O 1.34704 * 120.00116 * 359.97438 * 14 13 12 17 17 C 1.45201 * 117.00270 * 180.02562 * 16 14 13 18 18 C 1.53007 * 109.46958 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46613 * 179.97438 * 18 17 16 20 20 N 1.46506 * 109.46855 * 179.97438 * 19 18 17 21 21 C 1.46760 * 124.35015 * 269.72594 * 20 19 18 22 22 C 1.54656 * 105.38203 * 162.85379 * 21 20 19 23 23 C 1.54630 * 101.68626 * 25.76531 * 22 21 20 24 24 C 1.34419 * 124.34798 * 90.02591 * 20 19 18 25 25 O 1.21287 * 124.94031 * 0.42379 * 24 20 19 26 26 C 1.39091 * 119.93758 * 0.02562 * 13 12 11 27 27 H 0.96996 * 119.99900 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.97524 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.79229 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.82401 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.46958 * 299.99666 * 17 16 14 32 32 H 1.08996 * 109.47082 * 60.00129 * 17 16 14 33 33 H 1.09002 * 109.47119 * 299.99698 * 18 17 16 34 34 H 1.08996 * 109.47013 * 60.00216 * 18 17 16 35 35 H 1.09002 * 109.47224 * 299.99747 * 19 18 17 36 36 H 1.08996 * 109.47161 * 60.00421 * 19 18 17 37 37 H 1.08994 * 110.24647 * 281.98481 * 21 20 19 38 38 H 1.09003 * 110.24566 * 43.98655 * 21 20 19 39 39 H 1.09002 * 111.19483 * 267.59639 * 22 21 20 40 40 H 1.08994 * 110.82397 * 143.77512 * 22 21 20 41 41 H 1.08998 * 110.48814 * 216.31325 * 23 22 21 42 42 H 1.09001 * 110.59714 * 93.71658 * 23 22 21 43 43 H 1.08005 * 120.20036 * 179.72812 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3518 -2.4074 -0.3746 10 6 1.8268 -3.6500 0.0864 11 6 1.1864 -4.8126 -0.2809 12 6 0.0742 -4.7700 -1.1027 13 6 -0.4126 -3.5445 -1.5708 14 6 -1.6014 -3.5073 -2.4477 15 8 -2.0238 -2.4432 -2.8534 16 8 -2.2167 -4.6535 -2.7973 17 6 -3.3781 -4.5413 -3.6615 18 6 -3.9371 -5.9364 -3.9482 19 6 -5.1613 -5.8180 -4.8584 20 7 -5.6963 -7.1539 -5.1334 21 6 -5.2872 -7.9927 -6.2660 22 6 -5.7570 -9.4222 -5.9085 23 6 -6.9375 -9.1339 -4.9524 24 6 -6.6292 -7.7663 -4.3841 25 8 -7.1484 -7.2913 -3.3962 26 6 0.2235 -2.3614 -1.2099 27 1 -0.4850 0.8400 -0.0004 28 1 2.6942 -3.6916 0.7285 29 1 1.5546 -5.7635 0.0748 30 1 -0.4209 -5.6876 -1.3844 31 1 -4.1406 -3.9380 -3.1688 32 1 -3.0888 -4.0665 -4.5991 33 1 -3.1744 -6.5393 -4.4411 34 1 -4.2263 -6.4115 -3.0109 35 1 -5.9239 -5.2153 -4.3651 36 1 -4.8725 -5.3427 -5.7958 37 1 -5.7702 -7.6519 -7.1817 38 1 -4.2033 -7.9706 -6.3796 39 1 -4.9705 -9.9799 -5.4001 40 1 -6.0962 -9.9524 -6.7983 41 1 -6.9746 -9.8781 -4.1569 42 1 -7.8794 -9.1156 -5.5007 43 1 -0.1461 -1.4135 -1.5724 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733449476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:10 Heat of formation + Delta-G solvation = -112.161475 kcal Electronic energy + Delta-G solvation = -25041.084613 eV Core-core repulsion = 21243.468112 eV Total energy + Delta-G solvation = -3797.616501 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65714 -39.74770 -37.44377 -36.74209 -35.99988 -34.45406 -33.75715 -31.24072 -30.21412 -29.51380 -27.91862 -26.24351 -25.32334 -23.20952 -22.30371 -21.79095 -20.99715 -19.95047 -19.51483 -17.84508 -17.16557 -16.91855 -16.31487 -16.26523 -15.91654 -15.57298 -14.97418 -14.67063 -14.35526 -14.14502 -14.03641 -13.71252 -13.46781 -13.28793 -12.99302 -12.70982 -12.56562 -12.52713 -12.38340 -11.89865 -11.71727 -11.47328 -11.38410 -11.26769 -11.16454 -11.09761 -10.77154 -10.52546 -10.20820 -10.18621 -10.05276 -9.73827 -9.51816 -9.26014 -9.05827 -7.75867 -7.57352 -6.84365 -4.45157 1.96951 2.29287 2.60559 2.75943 3.05920 3.10274 3.12214 3.27299 3.59079 3.89143 3.97379 4.05792 4.39222 4.56189 4.60425 4.71175 4.86685 4.93169 5.05139 5.12434 5.17856 5.27463 5.30115 5.39801 5.45327 5.52844 5.54283 5.71684 5.86361 5.97764 6.12720 6.22575 6.39126 6.62671 6.80499 6.91828 6.93954 6.98258 7.15557 7.29559 7.66907 7.74011 7.88923 7.89469 8.08743 8.42937 8.54717 8.75474 8.77519 10.11000 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.002209 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.592762 B =12670.996759 C =13235.163502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.201 4.201 11 C -0.104 4.104 12 C -0.194 4.194 13 C -0.115 4.115 14 C 0.512 3.488 15 O -0.518 6.518 16 O -0.356 6.356 17 C 0.069 3.931 18 C -0.135 4.135 19 C 0.129 3.871 20 N -0.619 5.619 21 C 0.100 3.900 22 C -0.132 4.132 23 C -0.156 4.156 24 C 0.514 3.486 25 O -0.529 6.529 26 C -0.090 4.090 27 H 0.284 0.716 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.533 -14.658 -13.200 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.092 3.908 10 C -0.221 4.221 11 C -0.122 4.122 12 C -0.214 4.214 13 C -0.116 4.116 14 C 0.359 3.641 15 O -0.408 6.408 16 O -0.273 6.273 17 C -0.006 4.006 18 C -0.173 4.173 19 C 0.007 3.993 20 N -0.354 5.354 21 C -0.023 4.023 22 C -0.170 4.170 23 C -0.196 4.196 24 C 0.302 3.698 25 O -0.405 6.405 26 C -0.109 4.109 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.150 -13.854 -12.788 21.413 hybrid contribution 0.231 0.841 -0.075 0.875 sum -9.918 -13.014 -12.864 20.813 Atomic orbital electron populations 1.69790 1.07623 1.29749 1.33887 1.25978 0.94780 1.01645 0.92255 0.86215 0.80881 0.80717 0.78697 1.18291 1.19563 1.19889 1.19599 0.98288 0.90907 1.40015 0.89883 1.17551 0.91138 0.92640 0.89439 1.21184 1.03184 0.92700 1.05030 1.20511 0.96142 0.96935 0.98628 1.20559 1.00147 0.95307 1.05354 1.18834 0.94855 0.95907 1.02000 1.21880 0.83073 0.80857 0.78253 1.90759 1.65221 1.31206 1.53578 1.86579 1.41808 1.36209 1.62729 1.22729 0.86771 0.97126 0.93940 1.21899 0.97406 0.96687 1.01349 1.21239 0.95754 0.82512 0.99800 1.48276 1.41278 1.17669 1.28160 1.22163 1.01154 0.90012 0.89013 1.22634 0.97999 0.96124 1.00251 1.22337 1.00384 0.95822 1.01037 1.20983 0.78531 0.87667 0.82668 1.90760 1.53682 1.70687 1.25342 1.21653 0.96543 0.96003 0.96739 0.90441 0.88322 0.88525 0.87918 0.91303 0.91443 0.90538 0.90326 0.89465 0.89790 0.90876 0.90051 0.89746 0.89109 0.87981 0.87843 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.72 10.96 55.55 0.61 -20.11 16 2 C 0.07 1.81 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -11.95 9.05 -37.73 -0.34 -12.30 16 8 H 0.08 2.05 7.91 -52.48 -0.41 1.63 16 9 C 0.09 2.50 5.57 -106.88 -0.60 1.90 16 10 C -0.20 -4.77 9.78 -38.81 -0.38 -5.15 16 11 C -0.10 -2.26 10.01 -39.73 -0.40 -2.66 16 12 C -0.19 -4.32 9.62 -38.91 -0.37 -4.70 16 13 C -0.11 -2.80 5.87 -105.05 -0.62 -3.41 16 14 C 0.51 11.70 7.90 34.63 0.27 11.97 16 15 O -0.52 -12.79 16.12 -19.24 -0.31 -13.10 16 16 O -0.36 -6.80 9.46 -40.50 -0.38 -7.19 16 17 C 0.07 1.02 5.48 37.16 0.20 1.23 16 18 C -0.13 -1.56 5.92 -26.73 -0.16 -1.72 16 19 C 0.13 1.23 5.93 -4.04 -0.02 1.21 16 20 N -0.62 -5.55 2.93 -172.30 -0.51 -6.05 16 21 C 0.10 0.52 7.36 -3.03 -0.02 0.50 16 22 C -0.13 -0.52 7.19 -25.00 -0.18 -0.70 16 23 C -0.16 -0.97 6.86 -26.74 -0.18 -1.15 16 24 C 0.51 5.59 8.02 -10.86 -0.09 5.51 16 25 O -0.53 -8.28 17.59 5.55 0.10 -8.18 16 26 C -0.09 -2.40 8.23 -38.43 -0.32 -2.72 16 27 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 28 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 29 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.10 2.06 7.59 -52.49 -0.40 1.66 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 0.94 7.92 -51.93 -0.41 0.53 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.14 3.85 5.75 -52.48 -0.30 3.55 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -32.50 369.02 -9.41 -41.91 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.16 Total: 4.05 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -3.29 Total: -10.46 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.10 Total: -26.16 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.60 Total: -28.47 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.50 -9.41 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733449476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.253 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds