Wall clock time and date at job start Tue Mar 31 2020 11:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47097 * 299.99302 * 3 2 1 6 6 H 1.48502 * 109.47583 * 59.99876 * 3 2 1 7 7 C 1.39934 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00114 * 197.86007 * 7 2 1 9 9 C 1.41436 * 120.00211 * 17.86118 * 7 2 1 10 10 C 1.40792 * 120.17621 * 204.39095 * 9 7 2 11 11 C 1.37718 * 120.05257 * 180.02562 * 10 9 7 12 12 C 1.38353 * 120.41757 * 359.97438 * 11 10 9 13 13 C 1.39924 * 120.35413 * 0.02562 * 12 11 10 14 14 C 1.47768 * 120.03227 * 180.02562 * 13 12 11 15 15 O 1.21464 * 120.00223 * 179.97438 * 14 13 12 16 16 O 1.34704 * 120.00116 * 359.97438 * 14 13 12 17 17 C 1.45201 * 117.00270 * 180.02562 * 16 14 13 18 18 C 1.53007 * 109.46958 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46613 * 179.97438 * 18 17 16 20 20 N 1.46506 * 109.46855 * 179.97438 * 19 18 17 21 21 C 1.46760 * 124.35015 * 269.72594 * 20 19 18 22 22 C 1.54656 * 105.38203 * 162.85379 * 21 20 19 23 23 C 1.54630 * 101.68626 * 25.76531 * 22 21 20 24 24 C 1.34419 * 124.34798 * 90.02591 * 20 19 18 25 25 O 1.21287 * 124.94031 * 0.42379 * 24 20 19 26 26 C 1.39091 * 119.93758 * 0.02562 * 13 12 11 27 27 H 0.96996 * 119.99900 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.97524 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.79229 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.82401 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.46958 * 299.99666 * 17 16 14 32 32 H 1.08996 * 109.47082 * 60.00129 * 17 16 14 33 33 H 1.09002 * 109.47119 * 299.99698 * 18 17 16 34 34 H 1.08996 * 109.47013 * 60.00216 * 18 17 16 35 35 H 1.09002 * 109.47224 * 299.99747 * 19 18 17 36 36 H 1.08996 * 109.47161 * 60.00421 * 19 18 17 37 37 H 1.08994 * 110.24647 * 281.98481 * 21 20 19 38 38 H 1.09003 * 110.24566 * 43.98655 * 21 20 19 39 39 H 1.09002 * 111.19483 * 267.59639 * 22 21 20 40 40 H 1.08994 * 110.82397 * 143.77512 * 22 21 20 41 41 H 1.08998 * 110.48814 * 216.31325 * 23 22 21 42 42 H 1.09001 * 110.59714 * 93.71658 * 23 22 21 43 43 H 1.08005 * 120.20036 * 179.72812 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3518 -2.4074 -0.3746 10 6 1.8268 -3.6500 0.0864 11 6 1.1864 -4.8126 -0.2809 12 6 0.0742 -4.7700 -1.1027 13 6 -0.4126 -3.5445 -1.5708 14 6 -1.6014 -3.5073 -2.4477 15 8 -2.0238 -2.4432 -2.8534 16 8 -2.2167 -4.6535 -2.7973 17 6 -3.3781 -4.5413 -3.6615 18 6 -3.9371 -5.9364 -3.9482 19 6 -5.1613 -5.8180 -4.8584 20 7 -5.6963 -7.1539 -5.1334 21 6 -5.2872 -7.9927 -6.2660 22 6 -5.7570 -9.4222 -5.9085 23 6 -6.9375 -9.1339 -4.9524 24 6 -6.6292 -7.7663 -4.3841 25 8 -7.1484 -7.2913 -3.3962 26 6 0.2235 -2.3614 -1.2099 27 1 -0.4850 0.8400 -0.0004 28 1 2.6942 -3.6916 0.7285 29 1 1.5546 -5.7635 0.0748 30 1 -0.4209 -5.6876 -1.3844 31 1 -4.1406 -3.9380 -3.1688 32 1 -3.0888 -4.0665 -4.5991 33 1 -3.1744 -6.5393 -4.4411 34 1 -4.2263 -6.4115 -3.0109 35 1 -5.9239 -5.2153 -4.3651 36 1 -4.8725 -5.3427 -5.7958 37 1 -5.7702 -7.6519 -7.1817 38 1 -4.2033 -7.9706 -6.3796 39 1 -4.9705 -9.9799 -5.4001 40 1 -6.0962 -9.9524 -6.7983 41 1 -6.9746 -9.8781 -4.1569 42 1 -7.8794 -9.1156 -5.5007 43 1 -0.1461 -1.4135 -1.5724 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733449476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:09 Heat of formation + Delta-G solvation = -130.040603 kcal Electronic energy + Delta-G solvation = -25041.859910 eV Core-core repulsion = 21243.468112 eV Total energy + Delta-G solvation = -3798.391798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53805 -41.29737 -39.24501 -37.78166 -37.43203 -35.66957 -35.32684 -32.44752 -31.71209 -31.36552 -28.44568 -27.52955 -27.00418 -24.79458 -23.02180 -22.84165 -22.68677 -21.59789 -20.39056 -19.64271 -18.32143 -17.90039 -17.74410 -17.54527 -17.33921 -16.67894 -16.48280 -16.40481 -15.54499 -15.27514 -15.17314 -14.74887 -14.73015 -14.43399 -14.33708 -14.13402 -13.85520 -13.51089 -13.35247 -13.32049 -13.01221 -12.82844 -12.62388 -12.60212 -12.35829 -12.22160 -12.17721 -12.05196 -11.83719 -11.57350 -11.56139 -11.32940 -11.11584 -10.88080 -9.79514 -9.64240 -9.47010 -8.70630 -6.41655 0.10046 0.94197 1.37043 1.42006 1.43966 1.53617 1.64255 1.77185 2.09165 2.18084 2.70086 3.42385 3.60675 3.64195 3.73284 3.77503 3.88523 4.07150 4.11873 4.19470 4.25079 4.31551 4.41855 4.48314 4.60648 4.69978 4.71445 4.81477 4.84641 4.91457 4.96592 5.03420 5.11128 5.11551 5.24661 5.25979 5.29553 5.42662 5.53439 5.79572 5.87105 5.99148 6.11550 6.20642 6.51113 6.77482 6.84403 6.86951 7.10749 8.27139 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.002209 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.592762 B =12670.996759 C =13235.163502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.028 3.972 3 Si 0.985 3.015 4 H -0.249 1.249 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.492 4.492 8 H 0.089 0.911 9 C 0.065 3.935 10 C -0.203 4.203 11 C -0.099 4.099 12 C -0.182 4.182 13 C -0.129 4.129 14 C 0.515 3.485 15 O -0.546 6.546 16 O -0.351 6.351 17 C 0.063 3.937 18 C -0.118 4.118 19 C 0.129 3.871 20 N -0.619 5.619 21 C 0.092 3.908 22 C -0.121 4.121 23 C -0.150 4.150 24 C 0.496 3.504 25 O -0.592 6.592 26 C -0.124 4.124 27 H 0.288 0.712 28 H 0.117 0.883 29 H 0.142 0.858 30 H 0.131 0.869 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.120 0.880 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.757 -16.986 -14.822 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.806 3.194 4 H -0.172 1.172 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.521 4.521 8 H 0.107 0.893 9 C 0.062 3.938 10 C -0.222 4.222 11 C -0.117 4.117 12 C -0.201 4.201 13 C -0.131 4.131 14 C 0.363 3.637 15 O -0.438 6.438 16 O -0.268 6.268 17 C -0.011 4.011 18 C -0.157 4.157 19 C 0.007 3.993 20 N -0.351 5.351 21 C -0.029 4.029 22 C -0.158 4.158 23 C -0.190 4.190 24 C 0.286 3.714 25 O -0.473 6.473 26 C -0.144 4.144 27 H 0.098 0.902 28 H 0.135 0.865 29 H 0.159 0.841 30 H 0.149 0.851 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.139 0.861 41 H 0.122 0.878 42 H 0.139 0.861 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.353 -16.241 -14.451 23.666 hybrid contribution -0.072 1.371 0.374 1.423 sum -9.425 -14.870 -14.077 22.542 Atomic orbital electron populations 1.69883 1.09350 1.30754 1.35295 1.26901 0.95414 1.05136 0.91211 0.85108 0.79718 0.75870 0.78753 1.17243 1.19474 1.19004 1.19892 0.98742 0.91880 1.41558 0.89308 1.17923 0.91633 0.94170 0.90029 1.21510 1.03582 0.92471 1.04655 1.20967 0.95197 0.98133 0.97369 1.20944 0.99867 0.95321 1.04000 1.19090 0.95421 0.96179 1.02365 1.21697 0.82849 0.81296 0.77829 1.90736 1.65988 1.32436 1.54629 1.86537 1.42877 1.34170 1.63179 1.23101 0.85040 0.99384 0.93614 1.21800 0.98462 0.94474 1.00963 1.21191 0.94251 0.83353 1.00540 1.48470 1.40404 1.17522 1.28744 1.22507 1.02187 0.90060 0.88179 1.22685 0.96853 0.95571 1.00729 1.22383 1.02265 0.92683 1.01625 1.21915 0.78173 0.89318 0.81967 1.90716 1.55975 1.72412 1.28149 1.21467 0.98255 0.95811 0.98858 0.90155 0.86534 0.84061 0.85124 0.92234 0.89912 0.88785 0.92507 0.91415 0.86799 0.88850 0.88852 0.89499 0.86108 0.87778 0.86149 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.68 10.96 21.82 0.24 -45.44 16 2 C 0.03 1.46 5.14 85.25 0.44 1.89 16 3 Si 0.99 38.93 29.59 68.60 2.03 40.96 16 4 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.49 -26.30 9.05 23.47 0.21 -26.08 16 8 H 0.09 4.45 7.91 -2.91 -0.02 4.42 16 9 C 0.06 3.49 5.57 -21.32 -0.12 3.37 16 10 C -0.20 -9.41 9.78 22.77 0.22 -9.19 16 11 C -0.10 -4.03 10.01 22.17 0.22 -3.81 16 12 C -0.18 -7.78 9.62 22.71 0.22 -7.56 16 13 C -0.13 -6.39 5.87 -20.14 -0.12 -6.51 16 14 C 0.52 23.93 7.90 70.34 0.56 24.48 16 15 O -0.55 -27.95 16.12 19.95 0.32 -27.63 16 16 O -0.35 -13.24 9.46 -56.14 -0.53 -13.77 16 17 C 0.06 1.83 5.48 71.98 0.39 2.22 16 18 C -0.12 -2.62 5.92 30.60 0.18 -2.44 16 19 C 0.13 2.34 5.93 86.38 0.51 2.85 16 20 N -0.62 -10.10 2.93 -817.62 -2.40 -12.50 16 21 C 0.09 0.64 7.36 86.89 0.64 1.28 16 22 C -0.12 -0.52 7.19 31.71 0.23 -0.29 16 23 C -0.15 -1.56 6.86 30.59 0.21 -1.35 16 24 C 0.50 10.62 8.02 87.90 0.70 11.33 16 25 O -0.59 -19.39 17.59 -3.05 -0.05 -19.44 16 26 C -0.12 -6.90 8.23 23.02 0.19 -6.71 16 27 H 0.29 14.57 8.30 -92.71 -0.77 13.80 16 28 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 29 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 30 H 0.13 4.83 7.59 -2.91 -0.02 4.80 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.50 7.92 -2.39 -0.02 1.48 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.11 6.42 5.75 -2.91 -0.02 6.41 16 Total: -1.00 -75.65 369.02 5.31 -70.34 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 1.01 Total: 23.99 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 4.69 Total: -16.51 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -2.16 Total: -57.94 kcal Atomic # 8 Polarization: -60.58 SS G_CDS: -0.26 Total: -60.84 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -75.65 5.31 -70.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733449476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.701 kcal (2) G-P(sol) polarization free energy of solvation -75.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds