Wall clock time and date at job start Tue Mar 31 2020 11:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99876 * 2 1 4 4 H 1.48500 * 109.47061 * 275.13764 * 3 2 1 5 5 H 1.48506 * 109.47135 * 35.13158 * 3 2 1 6 6 H 1.48502 * 109.47265 * 155.13243 * 3 2 1 7 7 C 1.38812 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99897 * 34.30241 * 7 2 1 9 9 N 1.36938 * 119.99927 * 214.31269 * 7 2 1 10 10 C 1.46494 * 120.00072 * 36.00572 * 9 7 2 11 11 N 1.46495 * 109.47225 * 95.98428 * 10 9 7 12 12 C 1.35065 * 125.91384 * 94.99701 * 11 10 9 13 13 C 1.35042 * 108.02128 * 179.78637 * 12 11 10 14 14 C 1.41017 * 107.84198 * 0.37257 * 13 12 11 15 15 C 1.47915 * 126.06418 * 179.88481 * 14 13 12 16 16 C 1.34746 * 125.26898 * 179.73834 * 15 14 13 17 17 C 1.38020 * 114.70096 * 180.02562 * 16 15 14 18 18 C 1.33566 * 115.06085 * 0.02562 * 17 16 15 19 19 S 1.75859 * 109.76376 * 359.97438 * 18 17 16 20 20 N 1.31779 * 107.87046 * 359.62666 * 14 13 12 21 21 C 1.46497 * 119.99742 * 216.00867 * 9 7 2 22 22 C 1.54274 * 110.03136 * 56.30010 * 21 9 7 23 23 C 1.54966 * 104.15997 * 217.13568 * 22 21 9 24 24 C 1.54895 * 102.77804 * 37.88718 * 23 22 21 25 25 C 1.53874 * 110.03532 * 299.08316 * 21 9 7 26 26 H 0.97005 * 120.00346 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47606 * 335.97783 * 10 9 7 28 28 H 1.09006 * 109.47383 * 215.98117 * 10 9 7 29 29 H 1.07998 * 125.98509 * 0.05185 * 12 11 10 30 30 H 1.08004 * 126.07895 * 180.21811 * 13 12 11 31 31 H 1.07997 * 122.64277 * 359.97438 * 16 15 14 32 32 H 1.08002 * 122.46648 * 179.97438 * 17 16 15 33 33 H 1.08008 * 125.11610 * 180.02562 * 18 17 16 34 34 H 1.08998 * 110.02059 * 177.69144 * 21 9 7 35 35 H 1.09000 * 110.48570 * 335.78347 * 22 21 9 36 36 H 1.08998 * 110.48538 * 98.42805 * 22 21 9 37 37 H 1.09001 * 110.72260 * 279.57623 * 23 22 21 38 38 H 1.08996 * 110.92538 * 156.29520 * 23 22 21 39 39 H 1.08992 * 110.48899 * 203.40606 * 24 23 22 40 40 H 1.09002 * 110.59633 * 80.81346 * 24 23 22 41 41 H 1.08993 * 110.03277 * 238.57465 * 25 21 9 42 42 H 1.09009 * 110.03135 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3890 2.1092 -1.3945 5 1 1.5059 2.6190 0.8057 6 1 3.5977 1.4114 0.5888 7 6 2.0103 -1.2021 -0.0005 8 1 1.6112 -2.0558 -0.5280 9 7 3.2009 -1.3055 0.6679 10 6 3.3963 -0.5898 1.9311 11 7 3.1134 -1.4903 3.0514 12 6 4.0249 -2.2176 3.7330 13 6 3.3735 -2.9128 4.6901 14 6 2.0008 -2.6065 4.5880 15 6 0.9217 -3.1495 5.4416 16 6 -0.3856 -2.8416 5.3329 17 6 -1.2052 -3.4758 6.2445 18 6 -0.5795 -4.2953 7.0936 19 16 1.1465 -4.2961 6.7563 20 7 1.8507 -1.7466 3.6009 21 6 4.2793 -2.1318 0.1198 22 6 4.6253 -1.6682 -1.3104 23 6 4.9376 -2.9825 -2.0698 24 6 3.8983 -3.9712 -1.4851 25 6 3.8176 -3.5954 0.0090 26 1 -0.4851 0.8401 0.0004 27 1 2.7213 0.2651 1.9726 28 1 4.4273 -0.2420 1.9960 29 1 5.0887 -2.2362 3.5479 30 1 3.8236 -3.5858 5.4050 31 1 -0.7621 -2.1524 4.5916 32 1 -2.2737 -3.3201 6.2700 33 1 -1.0612 -4.8714 7.8699 34 1 5.1609 -2.0656 0.7573 35 1 3.7742 -1.1594 -1.7629 36 1 5.4989 -1.0165 -1.2993 37 1 5.9525 -3.3188 -1.8576 38 1 4.7902 -2.8568 -3.1424 39 1 4.2417 -4.9990 -1.6019 40 1 2.9289 -3.8368 -1.9651 41 1 4.4756 -4.2396 0.5921 42 1 2.7913 -3.6911 0.3635 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738257252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:36 Heat of formation + Delta-G solvation = 134.231784 kcal Electronic energy + Delta-G solvation = -24354.695944 eV Core-core repulsion = 21042.809478 eV Total energy + Delta-G solvation = -3311.886466 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.38848 -38.03924 -37.35051 -34.76690 -32.29941 -31.27198 -29.50609 -28.74418 -28.06442 -27.13028 -25.53880 -23.83152 -22.58083 -20.70892 -20.37661 -20.10079 -19.16808 -18.36772 -17.45536 -16.77655 -15.93109 -15.48900 -15.31064 -14.91835 -14.65071 -14.01268 -13.65547 -13.35089 -13.23860 -12.93626 -12.75699 -12.69964 -12.47944 -12.30595 -12.09860 -11.80582 -11.43509 -11.17928 -10.83634 -10.71777 -10.65315 -10.58016 -10.51321 -10.45869 -10.09755 -9.95210 -9.86331 -9.81463 -9.39976 -8.63326 -8.27670 -8.17030 -7.69603 -7.23706 -6.23792 -3.54509 1.01202 1.75264 2.19010 2.57743 2.87413 3.17955 3.30451 3.36453 3.38432 3.75995 4.35489 4.66993 4.94981 5.05796 5.20910 5.22064 5.23751 5.29484 5.44505 5.49910 5.65616 5.86414 5.86730 6.01886 6.04968 6.08808 6.13866 6.17904 6.24794 6.25906 6.37227 6.40235 6.43255 6.44996 6.59390 6.66077 6.76027 6.80046 6.99543 7.03034 7.16559 7.71573 7.83344 8.21774 8.44161 8.74950 9.50178 9.84599 10.90040 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.004369 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.285314 B = 6406.653645 C = 7327.530497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.059 3.941 3 Si 0.842 3.158 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.282 4.282 8 H 0.081 0.919 9 N -0.568 5.568 10 C 0.355 3.645 11 N -0.347 5.347 12 C 0.043 3.957 13 C -0.274 4.274 14 C 0.097 3.903 15 C -0.082 4.082 16 C -0.126 4.126 17 C -0.125 4.125 18 C -0.230 4.230 19 S 0.114 5.886 20 N -0.238 5.238 21 C 0.166 3.834 22 C -0.133 4.133 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.131 4.131 26 H 0.266 0.734 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.162 0.838 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.162 0.838 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.835 -6.536 8.296 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.146 4.146 3 Si 0.668 3.332 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.410 4.410 8 H 0.098 0.902 9 N -0.286 5.286 10 C 0.148 3.852 11 N -0.137 5.137 12 C -0.105 4.105 13 C -0.304 4.304 14 C -0.068 4.068 15 C -0.201 4.201 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.366 4.366 19 S 0.376 5.624 20 N -0.063 5.063 21 C 0.060 3.940 22 C -0.171 4.171 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.170 4.170 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.179 0.821 30 H 0.151 0.849 31 H 0.166 0.834 32 H 0.157 0.843 33 H 0.179 0.821 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.130 -6.327 8.026 12.461 hybrid contribution -0.224 1.111 -0.224 1.155 sum 6.906 -5.216 7.802 11.652 Atomic orbital electron populations 1.70090 1.06371 1.27237 1.45329 1.25380 0.94667 0.97520 0.97036 0.87359 0.81393 0.86214 0.78269 1.21148 1.21608 1.19261 1.18441 0.95264 0.96218 1.31096 0.90156 1.44849 1.13515 1.53920 1.16338 1.22425 0.98808 0.88495 0.75423 1.51677 1.02840 1.33785 1.25408 1.22392 0.96665 0.96543 0.94886 1.21237 0.92480 1.10441 1.06269 1.19649 0.91400 0.99499 0.96222 1.21901 0.94950 1.02950 1.00323 1.20475 0.91661 1.02551 1.01156 1.20083 1.01146 0.98266 0.96111 1.25612 0.96715 1.07648 1.06662 1.83924 1.06231 1.43070 1.29177 1.77859 1.03092 1.16589 1.08759 1.21206 0.89186 0.90330 0.93301 1.22766 1.01233 0.96521 0.96618 1.22417 0.98123 0.96311 0.99027 1.22251 0.99263 0.97510 0.96479 1.22528 1.02285 0.96759 0.95476 0.92356 0.89167 0.90528 0.82089 0.84857 0.83447 0.84329 0.82077 0.92964 0.89340 0.93161 0.92612 0.92396 0.93103 0.91646 0.93519 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.73 13.97 55.49 0.78 -23.95 16 2 C 0.06 1.58 4.99 -17.43 -0.09 1.50 16 3 Si 0.84 19.89 26.29 -169.99 -4.47 15.42 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -5.83 5.94 56.52 0.34 -5.49 16 7 C -0.28 -7.27 7.90 -15.06 -0.12 -7.38 16 8 H 0.08 2.30 7.47 -52.49 -0.39 1.91 16 9 N -0.57 -12.33 2.25 -168.07 -0.38 -12.71 16 10 C 0.35 7.35 5.15 -63.76 -0.33 7.02 16 11 N -0.35 -7.11 3.85 -64.61 -0.25 -7.35 16 12 C 0.04 0.73 11.45 -17.26 -0.20 0.53 16 13 C -0.27 -4.72 10.58 -39.67 -0.42 -5.14 16 14 C 0.10 1.92 7.08 -82.87 -0.59 1.33 16 15 C -0.08 -1.45 6.44 -36.86 -0.24 -1.68 16 16 C -0.13 -2.15 10.05 -40.90 -0.41 -2.56 16 17 C -0.13 -1.71 10.16 -41.30 -0.42 -2.13 16 18 C -0.23 -2.81 11.22 29.10 0.33 -2.49 16 19 S 0.11 1.54 23.12 -107.50 -2.49 -0.95 16 20 N -0.24 -5.41 12.56 33.37 0.42 -4.99 16 21 C 0.17 3.03 3.43 -66.81 -0.23 2.80 16 22 C -0.13 -2.27 6.41 -25.03 -0.16 -2.43 16 23 C -0.12 -1.77 6.91 -24.69 -0.17 -1.94 16 24 C -0.12 -1.87 6.83 -25.07 -0.17 -2.04 16 25 C -0.13 -2.35 6.18 -25.61 -0.16 -2.51 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 27 H 0.09 2.08 4.57 -51.93 -0.24 1.84 16 28 H 0.08 1.34 8.03 -51.93 -0.42 0.92 16 29 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 30 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 31 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 32 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.05 0.85 7.89 -51.93 -0.41 0.45 16 35 H 0.09 1.78 6.97 -51.93 -0.36 1.42 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.63 7.14 -51.92 -0.37 1.26 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -29.61 356.48 -10.42 -40.03 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.04 Total: 6.26 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -3.37 Total: -17.14 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.57 Total: -49.00 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.47 Total: 15.42 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.49 Total: -0.95 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.61 -10.42 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738257252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.261 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds