Wall clock time and date at job start Tue Mar 31 2020 11:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99876 * 2 1 4 4 H 1.48500 * 109.47061 * 275.13764 * 3 2 1 5 5 H 1.48506 * 109.47135 * 35.13158 * 3 2 1 6 6 H 1.48502 * 109.47265 * 155.13243 * 3 2 1 7 7 C 1.38812 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99897 * 34.30241 * 7 2 1 9 9 N 1.36938 * 119.99927 * 214.31269 * 7 2 1 10 10 C 1.46494 * 120.00072 * 36.00572 * 9 7 2 11 11 N 1.46495 * 109.47225 * 95.98428 * 10 9 7 12 12 C 1.35065 * 125.91384 * 94.99701 * 11 10 9 13 13 C 1.35042 * 108.02128 * 179.78637 * 12 11 10 14 14 C 1.41017 * 107.84198 * 0.37257 * 13 12 11 15 15 C 1.47915 * 126.06418 * 179.88481 * 14 13 12 16 16 C 1.34746 * 125.26898 * 179.73834 * 15 14 13 17 17 C 1.38020 * 114.70096 * 180.02562 * 16 15 14 18 18 C 1.33566 * 115.06085 * 0.02562 * 17 16 15 19 19 S 1.75859 * 109.76376 * 359.97438 * 18 17 16 20 20 N 1.31779 * 107.87046 * 359.62666 * 14 13 12 21 21 C 1.46497 * 119.99742 * 216.00867 * 9 7 2 22 22 C 1.54274 * 110.03136 * 56.30010 * 21 9 7 23 23 C 1.54966 * 104.15997 * 217.13568 * 22 21 9 24 24 C 1.54895 * 102.77804 * 37.88718 * 23 22 21 25 25 C 1.53874 * 110.03532 * 299.08316 * 21 9 7 26 26 H 0.97005 * 120.00346 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47606 * 335.97783 * 10 9 7 28 28 H 1.09006 * 109.47383 * 215.98117 * 10 9 7 29 29 H 1.07998 * 125.98509 * 0.05185 * 12 11 10 30 30 H 1.08004 * 126.07895 * 180.21811 * 13 12 11 31 31 H 1.07997 * 122.64277 * 359.97438 * 16 15 14 32 32 H 1.08002 * 122.46648 * 179.97438 * 17 16 15 33 33 H 1.08008 * 125.11610 * 180.02562 * 18 17 16 34 34 H 1.08998 * 110.02059 * 177.69144 * 21 9 7 35 35 H 1.09000 * 110.48570 * 335.78347 * 22 21 9 36 36 H 1.08998 * 110.48538 * 98.42805 * 22 21 9 37 37 H 1.09001 * 110.72260 * 279.57623 * 23 22 21 38 38 H 1.08996 * 110.92538 * 156.29520 * 23 22 21 39 39 H 1.08992 * 110.48899 * 203.40606 * 24 23 22 40 40 H 1.09002 * 110.59633 * 80.81346 * 24 23 22 41 41 H 1.08993 * 110.03277 * 238.57465 * 25 21 9 42 42 H 1.09009 * 110.03135 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3890 2.1092 -1.3945 5 1 1.5059 2.6190 0.8057 6 1 3.5977 1.4114 0.5888 7 6 2.0103 -1.2021 -0.0005 8 1 1.6112 -2.0558 -0.5280 9 7 3.2009 -1.3055 0.6679 10 6 3.3963 -0.5898 1.9311 11 7 3.1134 -1.4903 3.0514 12 6 4.0249 -2.2176 3.7330 13 6 3.3735 -2.9128 4.6901 14 6 2.0008 -2.6065 4.5880 15 6 0.9217 -3.1495 5.4416 16 6 -0.3856 -2.8416 5.3329 17 6 -1.2052 -3.4758 6.2445 18 6 -0.5795 -4.2953 7.0936 19 16 1.1465 -4.2961 6.7563 20 7 1.8507 -1.7466 3.6009 21 6 4.2793 -2.1318 0.1198 22 6 4.6253 -1.6682 -1.3104 23 6 4.9376 -2.9825 -2.0698 24 6 3.8983 -3.9712 -1.4851 25 6 3.8176 -3.5954 0.0090 26 1 -0.4851 0.8401 0.0004 27 1 2.7213 0.2651 1.9726 28 1 4.4273 -0.2420 1.9960 29 1 5.0887 -2.2362 3.5479 30 1 3.8236 -3.5858 5.4050 31 1 -0.7621 -2.1524 4.5916 32 1 -2.2737 -3.3201 6.2700 33 1 -1.0612 -4.8714 7.8699 34 1 5.1609 -2.0656 0.7573 35 1 3.7742 -1.1594 -1.7629 36 1 5.4989 -1.0165 -1.2993 37 1 5.9525 -3.3188 -1.8576 38 1 4.7902 -2.8568 -3.1424 39 1 4.2417 -4.9990 -1.6019 40 1 2.9289 -3.8368 -1.9651 41 1 4.4756 -4.2396 0.5921 42 1 2.7913 -3.6911 0.3635 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738257252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:36 Heat of formation + Delta-G solvation = 117.959786 kcal Electronic energy + Delta-G solvation = -24355.401550 eV Core-core repulsion = 21042.809478 eV Total energy + Delta-G solvation = -3312.592072 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.83979 -39.50564 -38.53649 -36.35062 -34.09052 -32.87695 -30.91264 -30.09261 -29.42385 -28.64216 -27.15485 -25.20706 -24.17066 -22.10675 -21.73625 -21.38492 -20.76036 -19.60738 -19.02161 -18.21962 -17.51831 -17.01130 -16.75464 -16.31826 -16.07024 -15.64479 -15.02640 -14.83321 -14.68702 -14.53315 -14.16195 -14.02844 -13.89456 -13.78855 -13.34622 -13.06850 -12.96845 -12.83800 -12.55682 -12.33113 -12.19427 -11.88316 -11.79337 -11.78477 -11.66826 -11.41405 -11.34404 -11.30251 -10.80262 -10.62600 -9.60840 -9.36613 -9.04857 -9.02966 -8.30220 -5.58241 -0.20240 0.59983 1.07081 1.18111 1.29369 1.39739 1.44078 1.65551 1.89738 2.37369 2.37991 2.89304 3.27188 3.65564 3.83404 3.89896 3.93624 4.07389 4.19720 4.24999 4.45521 4.47650 4.57385 4.69022 4.69991 4.75363 4.82984 4.85775 4.89792 4.92057 5.03892 5.12168 5.16895 5.24297 5.26178 5.39444 5.42197 5.52380 5.54390 5.65289 5.77357 5.86516 6.17730 6.38962 6.84781 6.98889 7.54032 7.91873 8.89016 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.004369 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.285314 B = 6406.653645 C = 7327.530497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.001 3.999 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.230 1.230 7 C -0.255 4.255 8 H 0.030 0.970 9 N -0.578 5.578 10 C 0.355 3.645 11 N -0.364 5.364 12 C 0.057 3.943 13 C -0.278 4.278 14 C 0.092 3.908 15 C -0.132 4.132 16 C -0.138 4.138 17 C -0.144 4.144 18 C -0.205 4.205 19 S 0.167 5.833 20 N -0.312 5.312 21 C 0.160 3.840 22 C -0.133 4.133 23 C -0.108 4.108 24 C -0.117 4.117 25 C -0.126 4.126 26 H 0.262 0.738 27 H 0.059 0.941 28 H 0.124 0.876 29 H 0.211 0.789 30 H 0.164 0.836 31 H 0.113 0.887 32 H 0.161 0.839 33 H 0.204 0.796 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.937 -8.058 10.507 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.153 1.153 7 C -0.385 4.385 8 H 0.047 0.953 9 N -0.298 5.298 10 C 0.148 3.852 11 N -0.153 5.153 12 C -0.090 4.090 13 C -0.308 4.308 14 C -0.072 4.072 15 C -0.251 4.251 16 C -0.172 4.172 17 C -0.174 4.174 18 C -0.341 4.341 19 S 0.430 5.570 20 N -0.137 5.137 21 C 0.055 3.945 22 C -0.172 4.172 23 C -0.146 4.146 24 C -0.155 4.155 25 C -0.165 4.165 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.141 0.859 29 H 0.228 0.772 30 H 0.181 0.819 31 H 0.131 0.869 32 H 0.178 0.822 33 H 0.221 0.779 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 11.291 -7.865 10.253 17.160 hybrid contribution -1.547 1.354 -0.727 2.181 sum 9.744 -6.511 9.526 15.103 Atomic orbital electron populations 1.70223 1.08363 1.27571 1.49686 1.25950 0.95063 1.00982 0.97857 0.86281 0.81470 0.81055 0.77670 1.21583 1.23186 1.15314 1.18079 0.96303 0.94227 1.29887 0.95254 1.44869 1.13066 1.54784 1.17123 1.22327 1.00314 0.87460 0.75056 1.51167 1.03056 1.34977 1.26137 1.23124 0.98173 0.94354 0.93321 1.21609 0.91242 1.10936 1.07044 1.20195 0.93419 0.98297 0.95324 1.22192 0.94741 1.05535 1.02634 1.20525 0.92644 1.02592 1.01433 1.20187 1.02093 0.98997 0.96116 1.26164 0.96191 1.05796 1.05936 1.83610 1.06794 1.40436 1.26137 1.77801 1.04973 1.19598 1.11376 1.21492 0.89086 0.89378 0.94567 1.22733 1.00650 0.97938 0.95856 1.22387 0.99049 0.94113 0.99067 1.22236 0.98572 0.99624 0.95034 1.22448 0.99454 0.97667 0.96938 0.92912 0.92285 0.85865 0.77248 0.81857 0.86936 0.82185 0.77884 0.89328 0.93304 0.90569 0.89277 0.91634 0.90544 0.94835 0.91109 0.96060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.81 13.97 21.65 0.30 -57.51 16 2 C 0.00 0.06 4.99 84.86 0.42 0.49 16 3 Si 0.91 43.07 26.29 68.60 1.80 44.87 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 5 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 6 H -0.23 -9.33 5.94 99.48 0.59 -8.74 16 7 C -0.26 -14.02 7.90 84.03 0.66 -13.35 16 8 H 0.03 1.87 7.47 -2.91 -0.02 1.85 16 9 N -0.58 -25.27 2.25 -685.67 -1.54 -26.81 16 10 C 0.35 14.35 5.15 170.96 0.88 15.23 16 11 N -0.36 -14.77 3.85 -358.32 -1.38 -16.15 16 12 C 0.06 1.78 11.45 83.46 0.96 2.73 16 13 C -0.28 -9.05 10.58 22.22 0.24 -8.81 16 14 C 0.09 3.73 7.08 42.40 0.30 4.03 16 15 C -0.13 -4.72 6.44 24.03 0.15 -4.57 16 16 C -0.14 -4.96 10.05 21.42 0.22 -4.75 16 17 C -0.14 -3.83 10.16 21.16 0.21 -3.62 16 18 C -0.20 -4.37 11.22 66.76 0.75 -3.62 16 19 S 0.17 4.12 23.12 -56.49 -1.31 2.81 16 20 N -0.31 -14.90 12.56 -48.35 -0.61 -15.51 16 21 C 0.16 5.52 3.43 45.72 0.16 5.67 16 22 C -0.13 -4.29 6.41 31.70 0.20 -4.08 16 23 C -0.11 -2.88 6.91 31.91 0.22 -2.66 16 24 C -0.12 -3.65 6.83 31.67 0.22 -3.43 16 25 C -0.13 -4.45 6.18 31.32 0.19 -4.25 16 26 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 27 H 0.06 2.75 4.57 -2.39 -0.01 2.74 16 28 H 0.12 3.79 8.03 -2.38 -0.02 3.78 16 29 H 0.21 4.26 8.06 -2.91 -0.02 4.23 16 30 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 32 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 33 H 0.20 2.63 8.06 -2.91 -0.02 2.60 16 34 H 0.09 2.45 7.89 -2.39 -0.02 2.43 16 35 H 0.05 1.97 6.97 -2.39 -0.02 1.95 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.02 0.96 7.14 -2.38 -0.02 0.94 16 Total: -1.00 -74.76 356.48 3.95 -70.81 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.90 Total: 22.48 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 5.78 Total: -25.00 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -3.23 Total: -115.98 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.80 Total: 44.87 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.31 Total: 2.81 kcal Total: -74.76 3.95 -70.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738257252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.767 kcal (2) G-P(sol) polarization free energy of solvation -74.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds