Wall clock time and date at job start Tue Mar 31 2020 11:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38443 * 119.82121 * 2 1 4 4 C 1.37861 * 120.17243 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.08595 * 180.02562 * 4 3 2 6 6 C 1.39889 * 119.82401 * 359.97438 * 4 3 2 7 7 C 1.47140 * 120.17299 * 180.02562 * 6 4 3 8 8 C 1.34975 * 120.00325 * 134.32112 * 7 6 4 9 9 C 1.46236 * 119.99941 * 350.95941 * 8 7 6 10 10 O 1.21754 * 119.99668 * 352.73052 * 9 8 7 11 11 N 1.34776 * 119.99930 * 172.72229 * 9 8 7 12 12 C 1.36716 * 119.99524 * 179.72151 * 11 9 8 13 13 H 1.07994 * 120.00507 * 333.25975 * 12 11 9 14 14 C 1.39127 * 119.99520 * 153.24981 * 12 11 9 15 15 N 1.31320 * 119.99836 * 2.74459 * 14 12 11 16 16 Si 1.86798 * 119.99836 * 182.73465 * 14 12 11 17 17 H 1.48507 * 109.46953 * 60.00685 * 16 14 12 18 18 H 1.48501 * 109.47074 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47520 * 300.00597 * 16 14 12 20 20 C 1.46497 * 120.00231 * 0.02562 * 11 9 8 21 21 C 1.50697 * 109.46895 * 276.16460 * 20 11 9 22 22 O 1.20836 * 120.00087 * 359.97438 * 21 20 11 23 23 O 1.34229 * 120.00403 * 179.97438 * 21 20 11 24 24 C 1.39860 * 119.65406 * 0.28038 * 6 4 3 25 25 C 1.37900 * 119.82099 * 359.44369 * 24 6 4 26 26 C 1.50698 * 119.91232 * 180.25320 * 25 24 6 27 27 H 1.09000 * 109.46657 * 90.00694 * 1 2 3 28 28 H 1.09000 * 109.46704 * 209.99901 * 1 2 3 29 29 H 1.08993 * 109.47360 * 330.00099 * 1 2 3 30 30 H 1.07994 * 119.90908 * 0.04076 * 3 2 1 31 31 H 1.09000 * 109.46795 * 269.97859 * 5 4 3 32 32 H 1.08998 * 109.46771 * 29.97003 * 5 4 3 33 33 H 1.08992 * 109.47136 * 149.97404 * 5 4 3 34 34 H 1.08003 * 120.00329 * 314.32287 * 7 6 4 35 35 H 1.08006 * 120.00447 * 170.96401 * 8 7 6 36 36 H 0.96998 * 119.99771 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.47306 * 36.16214 * 20 11 9 38 38 H 1.08997 * 109.47449 * 156.16661 * 20 11 9 39 39 H 0.96694 * 117.00558 * 179.97438 * 23 21 20 40 40 H 1.08004 * 120.08504 * 179.70058 * 24 6 4 41 41 H 1.09001 * 109.47194 * 270.30463 * 26 25 24 42 42 H 1.09003 * 109.47230 * 30.30142 * 26 25 24 43 43 H 1.08998 * 109.47370 * 150.29966 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2011 0.0000 4 6 3.5740 1.2096 -0.0005 5 6 4.3215 2.5182 0.0001 6 6 4.2772 0.0002 -0.0005 7 6 5.7486 0.0003 -0.0005 8 6 6.4235 -0.8164 0.8357 9 6 5.7061 -1.5534 1.8752 10 8 4.5253 -1.3322 2.0734 11 7 6.3518 -2.4776 2.6137 12 6 5.6824 -3.1625 3.5893 13 1 4.8242 -2.7169 4.0701 14 6 6.1067 -4.4339 3.9625 15 7 7.1817 -4.9540 3.4163 16 14 5.1473 -5.4008 5.2408 17 1 3.7580 -5.6128 4.7611 18 1 5.8016 -6.7157 5.4606 19 1 5.1199 -4.6426 6.5173 20 6 7.7726 -2.7434 2.3754 21 6 7.9167 -3.7237 1.2399 22 8 6.9333 -4.1562 0.6867 23 8 9.1373 -4.1163 0.8429 24 6 3.5743 -1.2089 -0.0059 25 6 2.1953 -1.2005 0.0004 26 6 1.4359 -2.5022 0.0004 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6511 2.1338 0.0007 31 1 4.5016 2.8341 -1.0275 32 1 3.7288 3.2748 0.5142 33 1 5.2744 2.3920 0.5138 34 1 6.2886 0.6538 -0.6697 35 1 7.4936 -0.9255 0.7373 36 1 7.4777 -5.8402 3.6768 37 1 8.2784 -1.8127 2.1183 38 1 8.2199 -3.1630 3.2765 39 1 9.1793 -4.7466 0.1108 40 1 4.1101 -2.1466 -0.0109 41 1 1.2528 -2.8160 -1.0273 42 1 2.0215 -3.2646 0.5142 43 1 0.4841 -2.3676 0.5142 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738355416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:41 Heat of formation + Delta-G solvation = -69.955762 kcal Electronic energy + Delta-G solvation = -27394.149979 eV Core-core repulsion = 23598.363655 eV Total energy + Delta-G solvation = -3795.786324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.67682 -39.13274 -38.00546 -35.42313 -34.72756 -34.18799 -32.50093 -31.87166 -30.67324 -28.77222 -27.75261 -26.73883 -25.12699 -24.29373 -22.40650 -21.33907 -20.86873 -19.47839 -17.82668 -17.19209 -16.95254 -16.52791 -15.65975 -15.43067 -15.05330 -14.55287 -14.45258 -14.22624 -13.97948 -13.81310 -13.31770 -13.17974 -12.93205 -12.70494 -12.48477 -12.41507 -12.30012 -12.05766 -11.86132 -11.68697 -11.58272 -11.39309 -11.29074 -11.04481 -10.84335 -10.55928 -10.46173 -10.40641 -10.40553 -10.27773 -9.62275 -9.15681 -9.08361 -8.58174 -7.97372 -7.67198 -7.26321 -6.49002 -4.00738 1.39210 2.06622 2.48859 3.16669 3.20467 3.24981 3.47977 3.86593 4.13122 4.35033 4.45950 4.81218 5.08375 5.19433 5.21834 5.33839 5.45722 5.51503 5.58732 5.65643 5.75317 5.77916 5.83722 5.91789 5.94947 6.04719 6.05515 6.12036 6.18864 6.34389 6.38469 6.47447 6.60815 6.67434 6.73642 6.79101 6.88626 7.08260 7.23839 7.34066 7.42748 7.48986 7.67620 8.02998 8.36140 9.01741 9.06639 9.24667 9.86642 10.56795 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.004946 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.101983 B = 5659.749455 C = 6743.173715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.138 4.138 4 C -0.081 4.081 5 C -0.108 4.108 6 C -0.051 4.051 7 C -0.070 4.070 8 C -0.180 4.180 9 C 0.479 3.521 10 O -0.556 6.556 11 N -0.422 5.422 12 C -0.292 4.292 13 H 0.104 0.896 14 C 0.033 3.967 15 N -0.891 5.891 16 Si 0.936 3.064 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.143 3.857 21 C 0.493 3.507 22 O -0.511 6.511 23 O -0.534 6.534 24 C -0.014 4.014 25 C -0.105 4.105 26 C -0.110 4.110 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.273 0.727 37 H 0.072 0.928 38 H 0.138 0.862 39 H 0.391 0.609 40 H 0.116 0.884 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 7.778 -6.813 10.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.085 4.085 3 C -0.156 4.156 4 C -0.082 4.082 5 C -0.165 4.165 6 C -0.051 4.051 7 C -0.090 4.090 8 C -0.201 4.201 9 C 0.270 3.730 10 O -0.440 6.440 11 N -0.141 5.141 12 C -0.419 4.419 13 H 0.122 0.878 14 C -0.169 4.169 15 N -0.531 5.531 16 Si 0.762 3.238 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.198 1.198 20 C 0.017 3.983 21 C 0.334 3.666 22 O -0.397 6.397 23 O -0.345 6.345 24 C -0.032 4.032 25 C -0.105 4.105 26 C -0.167 4.167 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.247 0.753 40 H 0.134 0.866 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.912 7.828 -6.448 10.320 hybrid contribution 0.025 -1.300 0.200 1.315 sum -1.887 6.529 -6.247 9.231 Atomic orbital electron populations 1.20793 0.92266 1.02286 1.01462 1.19622 0.95121 0.92741 1.01060 1.20480 0.93260 0.96684 1.05197 1.19786 0.93469 0.94003 1.00899 1.20710 1.00102 0.94249 1.01390 1.18583 0.92241 0.92604 1.01665 1.22018 0.92770 0.96635 0.97623 1.23281 0.99666 0.99138 0.97996 1.18041 0.87068 0.84390 0.83461 1.90739 1.14893 1.68921 1.69471 1.43289 1.06814 1.33583 1.30374 1.19633 1.12659 0.97217 1.12440 0.87839 1.25379 0.96460 0.96341 0.98706 1.69523 1.22961 1.17696 1.42940 0.85838 0.79757 0.78343 0.79832 1.19742 1.20907 1.19781 1.20791 0.85658 0.94303 0.97556 1.23823 0.79623 0.81070 0.82103 1.90601 1.39412 1.54587 1.55070 1.84527 1.35217 1.61261 1.53472 1.20984 0.92867 0.97065 0.92321 1.19453 0.93656 0.94362 1.03053 1.20762 0.99759 0.95015 1.01157 0.91906 0.91473 0.92282 0.87166 0.91882 0.92148 0.91686 0.86040 0.86600 0.91604 0.90973 0.84441 0.75297 0.86563 0.92235 0.91463 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.59 36.00 0.35 -1.11 16 2 C -0.09 -1.44 5.89 -104.49 -0.62 -2.06 16 3 C -0.14 -2.26 9.33 -39.64 -0.37 -2.63 16 4 C -0.08 -1.39 5.92 -104.14 -0.62 -2.00 16 5 C -0.11 -1.43 9.58 36.01 0.35 -1.08 16 6 C -0.05 -0.98 4.50 -105.06 -0.47 -1.45 16 7 C -0.07 -1.23 8.33 -37.13 -0.31 -1.54 16 8 C -0.18 -3.50 9.04 -37.53 -0.34 -3.84 16 9 C 0.48 11.56 6.44 -13.05 -0.08 11.48 16 10 O -0.56 -14.80 11.85 5.14 0.06 -14.74 16 11 N -0.42 -10.50 2.17 -117.75 -0.26 -10.76 16 12 C -0.29 -7.85 9.21 -15.04 -0.14 -7.99 16 13 H 0.10 2.90 7.46 -52.49 -0.39 2.51 16 14 C 0.03 0.86 5.32 -17.44 -0.09 0.76 16 15 N -0.89 -22.78 8.65 55.51 0.48 -22.30 16 16 Si 0.94 20.73 29.55 -169.99 -5.02 15.70 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 C 0.14 3.09 4.85 -5.20 -0.03 3.06 16 21 C 0.49 10.80 6.25 36.00 0.23 11.02 16 22 O -0.51 -13.08 16.81 -18.76 -0.32 -13.40 16 23 O -0.53 -9.49 13.42 -39.25 -0.53 -10.01 16 24 C -0.01 -0.29 6.24 -39.10 -0.24 -0.54 16 25 C -0.11 -1.99 5.87 -104.69 -0.61 -2.61 16 26 C -0.11 -1.84 9.59 36.00 0.35 -1.50 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.86 5.92 -51.93 -0.31 0.55 16 29 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.06 0.86 7.08 -51.93 -0.37 0.50 16 34 H 0.12 1.67 7.99 -52.48 -0.42 1.25 16 35 H 0.12 1.94 6.27 -52.48 -0.33 1.61 16 36 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.07 1.28 6.37 -51.93 -0.33 0.95 16 38 H 0.14 3.11 6.34 -51.93 -0.33 2.78 16 39 H 0.39 5.33 9.10 45.56 0.41 5.74 16 40 H 0.12 2.74 7.13 -52.48 -0.37 2.36 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 43 H 0.06 0.93 5.93 -51.93 -0.31 0.63 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -32.67 354.37 -7.73 -40.40 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -4.83 Total: 11.78 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.66 Total: -2.02 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.22 Total: -33.06 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.78 Total: -38.15 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.67 -7.73 -40.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738355416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.552 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds