Wall clock time and date at job start Tue Mar 31 2020 11:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38443 * 119.82121 * 2 1 4 4 C 1.37861 * 120.17243 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.08595 * 180.02562 * 4 3 2 6 6 C 1.39889 * 119.82401 * 359.97438 * 4 3 2 7 7 C 1.47140 * 120.17299 * 180.02562 * 6 4 3 8 8 C 1.34975 * 120.00325 * 134.32112 * 7 6 4 9 9 C 1.46236 * 119.99941 * 350.95941 * 8 7 6 10 10 O 1.21754 * 119.99668 * 352.73052 * 9 8 7 11 11 N 1.34776 * 119.99930 * 172.72229 * 9 8 7 12 12 C 1.36716 * 119.99524 * 179.72151 * 11 9 8 13 13 H 1.07994 * 120.00507 * 333.25975 * 12 11 9 14 14 C 1.39127 * 119.99520 * 153.24981 * 12 11 9 15 15 N 1.31320 * 119.99836 * 2.74459 * 14 12 11 16 16 Si 1.86798 * 119.99836 * 182.73465 * 14 12 11 17 17 H 1.48507 * 109.46953 * 60.00685 * 16 14 12 18 18 H 1.48501 * 109.47074 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47520 * 300.00597 * 16 14 12 20 20 C 1.46497 * 120.00231 * 0.02562 * 11 9 8 21 21 C 1.50697 * 109.46895 * 276.16460 * 20 11 9 22 22 O 1.20836 * 120.00087 * 359.97438 * 21 20 11 23 23 O 1.34229 * 120.00403 * 179.97438 * 21 20 11 24 24 C 1.39860 * 119.65406 * 0.28038 * 6 4 3 25 25 C 1.37900 * 119.82099 * 359.44369 * 24 6 4 26 26 C 1.50698 * 119.91232 * 180.25320 * 25 24 6 27 27 H 1.09000 * 109.46657 * 90.00694 * 1 2 3 28 28 H 1.09000 * 109.46704 * 209.99901 * 1 2 3 29 29 H 1.08993 * 109.47360 * 330.00099 * 1 2 3 30 30 H 1.07994 * 119.90908 * 0.04076 * 3 2 1 31 31 H 1.09000 * 109.46795 * 269.97859 * 5 4 3 32 32 H 1.08998 * 109.46771 * 29.97003 * 5 4 3 33 33 H 1.08992 * 109.47136 * 149.97404 * 5 4 3 34 34 H 1.08003 * 120.00329 * 314.32287 * 7 6 4 35 35 H 1.08006 * 120.00447 * 170.96401 * 8 7 6 36 36 H 0.96998 * 119.99771 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.47306 * 36.16214 * 20 11 9 38 38 H 1.08997 * 109.47449 * 156.16661 * 20 11 9 39 39 H 0.96694 * 117.00558 * 179.97438 * 23 21 20 40 40 H 1.08004 * 120.08504 * 179.70058 * 24 6 4 41 41 H 1.09001 * 109.47194 * 270.30463 * 26 25 24 42 42 H 1.09003 * 109.47230 * 30.30142 * 26 25 24 43 43 H 1.08998 * 109.47370 * 150.29966 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2011 0.0000 4 6 3.5740 1.2096 -0.0005 5 6 4.3215 2.5182 0.0001 6 6 4.2772 0.0002 -0.0005 7 6 5.7486 0.0003 -0.0005 8 6 6.4235 -0.8164 0.8357 9 6 5.7061 -1.5534 1.8752 10 8 4.5253 -1.3322 2.0734 11 7 6.3518 -2.4776 2.6137 12 6 5.6824 -3.1625 3.5893 13 1 4.8242 -2.7169 4.0701 14 6 6.1067 -4.4339 3.9625 15 7 7.1817 -4.9540 3.4163 16 14 5.1473 -5.4008 5.2408 17 1 3.7580 -5.6128 4.7611 18 1 5.8016 -6.7157 5.4606 19 1 5.1199 -4.6426 6.5173 20 6 7.7726 -2.7434 2.3754 21 6 7.9167 -3.7237 1.2399 22 8 6.9333 -4.1562 0.6867 23 8 9.1373 -4.1163 0.8429 24 6 3.5743 -1.2089 -0.0059 25 6 2.1953 -1.2005 0.0004 26 6 1.4359 -2.5022 0.0004 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6511 2.1338 0.0007 31 1 4.5016 2.8341 -1.0275 32 1 3.7288 3.2748 0.5142 33 1 5.2744 2.3920 0.5138 34 1 6.2886 0.6538 -0.6697 35 1 7.4936 -0.9255 0.7373 36 1 7.4777 -5.8402 3.6768 37 1 8.2784 -1.8127 2.1183 38 1 8.2199 -3.1630 3.2765 39 1 9.1793 -4.7466 0.1108 40 1 4.1101 -2.1466 -0.0109 41 1 1.2528 -2.8160 -1.0273 42 1 2.0215 -3.2646 0.5142 43 1 0.4841 -2.3676 0.5142 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738355416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:40 Heat of formation + Delta-G solvation = -89.318176 kcal Electronic energy + Delta-G solvation = -27394.989596 eV Core-core repulsion = 23598.363655 eV Total energy + Delta-G solvation = -3796.625941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.33532 -40.64452 -39.67839 -37.11123 -36.41495 -35.67540 -33.95609 -33.71637 -32.04551 -30.01663 -29.52995 -28.09628 -26.80513 -25.67630 -23.91389 -22.92256 -22.44129 -20.90586 -19.47603 -18.97283 -18.65554 -18.21476 -17.34102 -16.89191 -16.62544 -16.25814 -16.03895 -15.86195 -15.41712 -15.25725 -14.85691 -14.66349 -14.32724 -14.03073 -13.80180 -13.69801 -13.61213 -13.56129 -13.52790 -13.17779 -13.06852 -12.83697 -12.76685 -12.65145 -12.47476 -12.23544 -12.17291 -12.06949 -11.73213 -11.62390 -11.46618 -10.97470 -10.59557 -10.33084 -9.80474 -9.12006 -8.74378 -8.41884 -6.01981 -0.04823 0.67150 1.06601 1.35138 1.40464 1.46130 1.75864 2.16871 2.37910 2.66179 2.96937 3.08829 3.22134 3.87085 3.96842 4.03750 4.08448 4.15996 4.24306 4.34833 4.43700 4.58140 4.66482 4.68663 4.73484 4.84313 4.85327 4.90310 4.93170 4.98042 5.01630 5.08360 5.17562 5.21759 5.32320 5.38928 5.43949 5.55149 5.73662 5.84821 5.93084 5.95631 6.10483 6.33170 6.46356 7.12850 7.31543 7.47134 8.01254 8.60536 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.004946 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.101983 B = 5659.749455 C = 6743.173715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.082 4.082 5 C -0.106 4.106 6 C -0.083 4.083 7 C -0.039 4.039 8 C -0.209 4.209 9 C 0.473 3.527 10 O -0.593 6.593 11 N -0.441 5.441 12 C -0.324 4.324 13 H 0.075 0.925 14 C 0.001 3.999 15 N -0.899 5.899 16 Si 0.989 3.011 17 H -0.287 1.287 18 H -0.271 1.271 19 H -0.261 1.261 20 C 0.142 3.858 21 C 0.501 3.499 22 O -0.556 6.556 23 O -0.518 6.518 24 C -0.040 4.040 25 C -0.133 4.133 26 C -0.105 4.105 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.145 0.855 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.170 0.830 35 H 0.145 0.855 36 H 0.274 0.726 37 H 0.113 0.887 38 H 0.126 0.874 39 H 0.412 0.588 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.031 0.969 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 10.124 -7.890 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.088 4.088 3 C -0.161 4.161 4 C -0.082 4.082 5 C -0.162 4.162 6 C -0.083 4.083 7 C -0.059 4.059 8 C -0.229 4.229 9 C 0.266 3.734 10 O -0.479 6.479 11 N -0.159 5.159 12 C -0.452 4.452 13 H 0.093 0.907 14 C -0.199 4.199 15 N -0.539 5.539 16 Si 0.813 3.187 17 H -0.214 1.214 18 H -0.195 1.195 19 H -0.186 1.186 20 C 0.017 3.983 21 C 0.344 3.656 22 O -0.445 6.445 23 O -0.330 6.330 24 C -0.058 4.058 25 C -0.133 4.133 26 C -0.162 4.162 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.162 0.838 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.187 0.813 35 H 0.163 0.837 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.144 0.856 39 H 0.271 0.729 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.050 0.950 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.846 10.173 -7.537 12.795 hybrid contribution -0.048 -1.928 0.397 1.969 sum -1.894 8.245 -7.140 11.070 Atomic orbital electron populations 1.20855 0.89365 1.03223 1.03097 1.20087 0.97326 0.92031 0.99322 1.20973 0.93419 0.97822 1.03924 1.20284 0.94234 0.94735 0.98964 1.20790 0.99726 0.92342 1.03357 1.18899 0.93392 0.92943 1.03095 1.22554 0.92320 0.94938 0.96110 1.23224 1.00924 1.00536 0.98240 1.18853 0.86997 0.83828 0.83722 1.90703 1.16661 1.69919 1.70629 1.43402 1.08108 1.33919 1.30506 1.19485 1.13090 0.98504 1.14144 0.90685 1.25999 0.97192 0.96497 1.00246 1.69607 1.23251 1.17635 1.43405 0.85056 0.77686 0.77689 0.78264 1.21367 1.19513 1.18582 1.20887 0.84214 0.96128 0.97065 1.23836 0.79827 0.80427 0.81557 1.90595 1.41111 1.56185 1.56657 1.84454 1.32777 1.61557 1.54199 1.20800 0.93954 0.96141 0.94951 1.19768 0.93334 0.96168 1.04003 1.20740 0.99771 0.93478 1.02182 0.89750 0.91488 0.90395 0.83765 0.89157 0.90451 0.91787 0.81306 0.83731 0.91603 0.86900 0.85590 0.72891 0.91108 0.90288 0.94968 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.56 9.59 71.24 0.68 -1.88 16 2 C -0.09 -2.84 5.89 -19.78 -0.12 -2.96 16 3 C -0.14 -4.33 9.33 22.23 0.21 -4.12 16 4 C -0.08 -2.62 5.92 -19.55 -0.12 -2.73 16 5 C -0.11 -2.38 9.58 71.24 0.68 -1.70 16 6 C -0.08 -3.19 4.50 -20.15 -0.09 -3.28 16 7 C -0.04 -1.33 8.33 23.86 0.20 -1.13 16 8 C -0.21 -8.09 9.04 23.60 0.21 -7.88 16 9 C 0.47 23.84 6.44 86.32 0.56 24.39 16 10 O -0.59 -33.50 11.85 -4.52 -0.05 -33.55 16 11 N -0.44 -22.86 2.17 -644.65 -1.40 -24.25 16 12 C -0.32 -18.45 9.21 84.15 0.77 -17.67 16 13 H 0.08 4.55 7.46 -2.91 -0.02 4.53 16 14 C 0.00 0.07 5.32 84.98 0.45 0.52 16 15 N -0.90 -46.96 8.65 21.69 0.19 -46.77 16 16 Si 0.99 43.83 29.55 68.60 2.03 45.86 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 19 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 20 C 0.14 6.20 4.85 85.63 0.42 6.62 16 21 C 0.50 22.03 6.25 71.23 0.45 22.47 16 22 O -0.56 -29.37 16.81 21.93 0.37 -29.00 16 23 O -0.52 -17.72 13.42 -51.41 -0.69 -18.41 16 24 C -0.04 -1.76 6.24 22.58 0.14 -1.62 16 25 C -0.13 -5.18 5.87 -19.91 -0.12 -5.30 16 26 C -0.11 -3.68 9.59 71.24 0.68 -3.00 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 1.57 5.92 -2.39 -0.01 1.56 16 29 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 30 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.50 8.09 -2.39 -0.02 1.48 16 33 H 0.06 1.47 7.08 -2.39 -0.02 1.45 16 34 H 0.17 3.99 7.99 -2.91 -0.02 3.96 16 35 H 0.15 4.61 6.27 -2.91 -0.02 4.59 16 36 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 37 H 0.11 3.87 6.37 -2.38 -0.02 3.86 16 38 H 0.13 5.78 6.34 -2.39 -0.02 5.77 16 39 H 0.41 10.59 9.10 -74.06 -0.67 9.91 16 40 H 0.07 3.68 7.13 -2.91 -0.02 3.66 16 41 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 43 H 0.08 2.49 5.93 -2.39 -0.01 2.48 16 Total: -1.00 -76.96 354.37 5.83 -71.13 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.38 Total: 34.28 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 5.01 Total: 0.72 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -1.21 Total: -71.02 kcal Atomic # 8 Polarization: -80.59 SS G_CDS: -0.37 Total: -80.96 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -76.96 5.83 -71.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738355416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.190 kcal (2) G-P(sol) polarization free energy of solvation -76.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds