Wall clock time and date at job start Tue Mar 31 2020 11:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38440 * 119.81998 * 2 1 4 4 C 1.37860 * 120.16947 * 179.72375 * 3 2 1 5 5 C 1.50703 * 120.08576 * 180.28321 * 4 3 2 6 6 C 1.39890 * 119.82419 * 0.58040 * 4 3 2 7 7 C 1.47147 * 120.17103 * 179.72646 * 6 4 3 8 8 C 1.34984 * 119.99812 * 179.71866 * 7 6 4 9 9 C 1.46229 * 119.99821 * 179.97438 * 8 7 6 10 10 O 1.21762 * 119.99973 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99999 * 180.02562 * 9 8 7 12 12 C 1.36713 * 120.00490 * 179.97438 * 11 9 8 13 13 H 1.08007 * 119.99413 * 16.71052 * 12 11 9 14 14 C 1.39122 * 120.00399 * 196.71427 * 12 11 9 15 15 N 1.31321 * 120.00087 * 21.68402 * 14 12 11 16 16 Si 1.86800 * 120.00016 * 201.68999 * 14 12 11 17 17 H 1.48508 * 109.47206 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47334 * 119.99554 * 16 14 12 19 19 H 1.48500 * 109.46938 * 240.00115 * 16 14 12 20 20 C 1.46501 * 120.00012 * 0.02562 * 11 9 8 21 21 C 1.50700 * 109.47313 * 83.92228 * 20 11 9 22 22 O 1.20820 * 119.99779 * 0.02562 * 21 20 11 23 23 O 1.34235 * 119.99711 * 180.02562 * 21 20 11 24 24 C 1.39850 * 119.65623 * 359.44602 * 6 4 3 25 25 C 1.37909 * 119.82143 * 0.25370 * 24 6 4 26 26 C 1.50692 * 119.91358 * 179.97438 * 25 24 6 27 27 H 1.09002 * 109.46693 * 269.97294 * 1 2 3 28 28 H 1.08998 * 109.47903 * 29.97613 * 1 2 3 29 29 H 1.09002 * 109.47228 * 149.97886 * 1 2 3 30 30 H 1.07999 * 119.91250 * 0.02900 * 3 2 1 31 31 H 1.09002 * 109.47148 * 270.29613 * 5 4 3 32 32 H 1.09003 * 109.47247 * 30.29641 * 5 4 3 33 33 H 1.09001 * 109.47296 * 150.29770 * 5 4 3 34 34 H 1.07995 * 120.00005 * 359.72109 * 7 6 4 35 35 H 1.07995 * 120.00183 * 0.02562 * 8 7 6 36 36 H 0.97000 * 119.99927 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.47351 * 203.92732 * 20 11 9 38 38 H 1.08998 * 109.46922 * 323.92267 * 20 11 9 39 39 H 0.96703 * 116.99391 * 180.02562 * 23 21 20 40 40 H 1.07996 * 120.09387 * 180.28164 * 24 6 4 41 41 H 1.09006 * 109.46813 * 90.00319 * 26 25 24 42 42 H 1.08992 * 109.47489 * 209.99967 * 26 25 24 43 43 H 1.08999 * 109.47609 * 330.00488 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2011 0.0000 4 6 3.5740 1.2095 0.0057 5 6 4.3214 2.5181 0.0122 6 6 4.2771 0.0002 -0.0007 7 6 5.7486 0.0003 -0.0007 8 6 6.4236 -1.1687 -0.0012 9 6 7.8858 -1.1685 -0.0018 10 8 8.4946 -0.1140 -0.0013 11 7 8.5598 -2.3356 -0.0028 12 6 9.9269 -2.3357 -0.0039 13 1 10.4671 -1.4399 0.2651 14 6 10.6223 -3.4894 -0.3514 15 7 10.0350 -4.4190 -1.0693 16 14 12.3916 -3.7163 0.2033 17 1 12.8181 -2.5336 0.9937 18 1 12.4944 -4.9367 1.0431 19 1 13.2689 -3.8586 -0.9863 20 6 7.8274 -3.6044 -0.0039 21 6 7.4459 -3.9631 -1.4170 22 8 7.7547 -3.2340 -2.3296 23 8 6.7632 -5.0926 -1.6617 24 6 3.5743 -1.2089 -0.0012 25 6 2.1953 -1.2006 -0.0006 26 6 1.4359 -2.5022 -0.0017 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3635 0.8901 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6510 2.1339 0.0005 31 1 4.5013 2.8388 -1.0139 32 1 3.7290 3.2724 0.5301 33 1 5.2746 2.3896 0.5250 34 1 6.2885 0.9356 -0.0003 35 1 5.8837 -2.1040 -0.0020 36 1 10.5200 -5.2232 -1.3119 37 1 8.4592 -4.3891 0.4122 38 1 6.9264 -3.5044 0.6014 39 1 6.5415 -5.2804 -2.5841 40 1 4.1100 -2.1466 -0.0016 41 1 1.2532 -2.8171 1.0257 42 1 0.4839 -2.3670 -0.5150 43 1 2.0213 -3.2640 -0.5166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738355417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:43 Heat of formation + Delta-G solvation = -83.057175 kcal Electronic energy + Delta-G solvation = -26435.401028 eV Core-core repulsion = 22639.046584 eV Total energy + Delta-G solvation = -3796.354444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.79737 -39.41616 -38.13671 -35.42637 -34.94123 -34.48989 -33.19381 -31.89500 -30.86920 -29.18272 -27.84242 -27.09365 -25.35076 -24.61086 -22.82018 -21.58377 -21.00903 -19.38328 -18.14765 -17.23059 -17.05131 -16.69916 -15.88431 -15.62776 -15.31325 -14.60746 -14.56929 -14.51002 -14.44054 -14.07701 -13.47327 -13.30914 -13.19364 -13.10448 -12.89730 -12.73540 -12.52151 -12.08067 -12.05460 -11.90296 -11.76545 -11.68550 -11.50324 -11.38973 -11.02362 -10.84689 -10.57001 -10.48713 -10.40142 -10.38936 -9.77745 -9.62184 -9.12896 -8.58571 -8.51748 -8.01412 -7.72470 -6.57993 -3.93298 0.88481 1.45886 2.40894 3.11123 3.19396 3.27169 3.42962 3.74410 3.91046 4.09808 4.41105 4.65559 4.75616 4.78200 4.93724 4.96742 5.05898 5.15183 5.22399 5.39520 5.44915 5.51183 5.56316 5.58783 5.70142 5.73683 5.75234 5.82161 5.83726 5.93684 5.99650 6.23712 6.26380 6.36677 6.39724 6.49817 6.58316 6.67525 6.88998 7.02740 7.12034 7.41321 7.46039 7.93971 8.29764 8.97310 9.01388 9.21177 9.81187 10.50109 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018806 B = 0.003554 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.555847 B = 7877.529147 C = 9000.293365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.119 4.119 4 C -0.075 4.075 5 C -0.119 4.119 6 C -0.050 4.050 7 C -0.081 4.081 8 C -0.162 4.162 9 C 0.477 3.523 10 O -0.583 6.583 11 N -0.417 5.417 12 C -0.299 4.299 13 H 0.112 0.888 14 C 0.028 3.972 15 N -0.872 5.872 16 Si 0.931 3.069 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.281 1.281 20 C 0.142 3.858 21 C 0.487 3.513 22 O -0.499 6.499 23 O -0.534 6.534 24 C -0.106 4.106 25 C -0.093 4.093 26 C -0.116 4.116 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.112 0.888 36 H 0.273 0.727 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.393 0.607 40 H 0.125 0.875 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.251 1.519 3.153 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.075 4.075 5 C -0.175 4.175 6 C -0.050 4.050 7 C -0.101 4.101 8 C -0.183 4.183 9 C 0.269 3.731 10 O -0.469 6.469 11 N -0.134 5.134 12 C -0.426 4.426 13 H 0.130 0.870 14 C -0.176 4.176 15 N -0.511 5.511 16 Si 0.757 3.243 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.207 1.207 20 C 0.016 3.984 21 C 0.327 3.673 22 O -0.384 6.384 23 O -0.346 6.346 24 C -0.124 4.124 25 C -0.093 4.093 26 C -0.172 4.172 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.147 0.853 38 H 0.098 0.902 39 H 0.249 0.751 40 H 0.143 0.857 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.640 2.125 3.235 17.084 hybrid contribution 0.773 -0.674 -0.736 1.262 sum -15.867 1.451 2.500 16.128 Atomic orbital electron populations 1.20833 0.91583 1.02591 1.02076 1.19756 0.95684 0.92604 1.01099 1.20748 0.93290 0.97265 1.02355 1.20022 0.93481 0.94689 0.99321 1.20851 1.00557 0.93534 1.02588 1.18943 0.92976 0.92577 1.00474 1.22128 0.90891 0.99073 0.98040 1.23230 0.95102 0.98093 1.01873 1.17868 0.86853 0.84264 0.84124 1.90644 1.69910 1.30434 1.55868 1.43382 1.06360 1.02454 1.61219 1.19851 0.79926 0.99696 1.43128 0.87022 1.25343 1.00835 0.96247 0.95132 1.69782 1.39089 1.09997 1.32213 0.85777 0.81252 0.78586 0.78647 1.18933 1.20372 1.20723 1.20753 0.97170 0.90635 0.89881 1.23779 0.72644 0.77276 0.93582 1.90628 1.49779 1.51519 1.46466 1.84517 1.70421 1.44320 1.35307 1.21267 0.93318 0.97677 1.00091 1.19610 0.93470 0.94829 1.01351 1.20846 0.99914 0.94239 1.02240 0.91387 0.91879 0.91276 0.86238 0.91020 0.91750 0.90663 0.84827 0.87043 0.91637 0.85324 0.90187 0.75092 0.85745 0.91271 0.91358 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.59 36.00 0.35 -0.61 16 2 C -0.09 -1.07 5.89 -104.49 -0.62 -1.68 16 3 C -0.12 -1.44 9.33 -39.65 -0.37 -1.81 16 4 C -0.07 -1.04 5.92 -104.14 -0.62 -1.65 16 5 C -0.12 -1.43 9.52 36.01 0.34 -1.08 16 6 C -0.05 -0.78 5.87 -105.06 -0.62 -1.40 16 7 C -0.08 -1.48 8.89 -37.12 -0.33 -1.81 16 8 C -0.16 -3.29 8.48 -37.53 -0.32 -3.61 16 9 C 0.48 12.07 7.33 -13.05 -0.10 11.97 16 10 O -0.58 -16.59 15.87 5.13 0.08 -16.51 16 11 N -0.42 -10.64 2.17 -117.75 -0.26 -10.89 16 12 C -0.30 -8.19 9.33 -15.05 -0.14 -8.33 16 13 H 0.11 3.21 7.37 -52.48 -0.39 2.82 16 14 C 0.03 0.73 4.87 -17.44 -0.08 0.64 16 15 N -0.87 -22.51 9.28 55.50 0.52 -22.00 16 16 Si 0.93 20.11 29.61 -169.99 -5.03 15.07 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 18 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 C 0.14 3.08 4.84 -5.19 -0.03 3.06 16 21 C 0.49 10.78 6.23 36.01 0.22 11.01 16 22 O -0.50 -13.13 16.78 -18.75 -0.31 -13.44 16 23 O -0.53 -9.45 13.42 -39.27 -0.53 -9.97 16 24 C -0.11 -1.53 9.06 -39.10 -0.35 -1.89 16 25 C -0.09 -1.16 5.87 -104.69 -0.61 -1.77 16 26 C -0.12 -1.11 9.59 36.00 0.35 -0.76 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.07 0.52 5.92 -51.93 -0.31 0.21 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.07 0.97 6.33 -51.93 -0.33 0.64 16 34 H 0.13 2.54 5.82 -52.49 -0.31 2.24 16 35 H 0.11 2.00 4.25 -52.49 -0.22 1.78 16 36 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.13 2.85 6.37 -51.93 -0.33 2.52 16 38 H 0.08 1.41 6.45 -51.93 -0.34 1.08 16 39 H 0.39 5.35 9.10 45.56 0.41 5.76 16 40 H 0.12 1.74 6.17 -52.49 -0.32 1.42 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.55 5.92 -51.93 -0.31 0.24 16 43 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -34.06 357.82 -7.58 -41.65 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.52 Total: 10.44 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.92 Total: 0.26 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.26 Total: -32.89 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.76 Total: -39.92 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.06 -7.58 -41.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738355417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.412 kcal (2) G-P(sol) polarization free energy of solvation -34.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds