Wall clock time and date at job start Tue Mar 31 2020 11:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38440 * 119.81998 * 2 1 4 4 C 1.37860 * 120.16947 * 179.72375 * 3 2 1 5 5 C 1.50703 * 120.08576 * 180.28321 * 4 3 2 6 6 C 1.39890 * 119.82419 * 0.58040 * 4 3 2 7 7 C 1.47147 * 120.17103 * 179.72646 * 6 4 3 8 8 C 1.34984 * 119.99812 * 179.71866 * 7 6 4 9 9 C 1.46229 * 119.99821 * 179.97438 * 8 7 6 10 10 O 1.21762 * 119.99973 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99999 * 180.02562 * 9 8 7 12 12 C 1.36713 * 120.00490 * 179.97438 * 11 9 8 13 13 H 1.08007 * 119.99413 * 16.71052 * 12 11 9 14 14 C 1.39122 * 120.00399 * 196.71427 * 12 11 9 15 15 N 1.31321 * 120.00087 * 21.68402 * 14 12 11 16 16 Si 1.86800 * 120.00016 * 201.68999 * 14 12 11 17 17 H 1.48508 * 109.47206 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47334 * 119.99554 * 16 14 12 19 19 H 1.48500 * 109.46938 * 240.00115 * 16 14 12 20 20 C 1.46501 * 120.00012 * 0.02562 * 11 9 8 21 21 C 1.50700 * 109.47313 * 83.92228 * 20 11 9 22 22 O 1.20820 * 119.99779 * 0.02562 * 21 20 11 23 23 O 1.34235 * 119.99711 * 180.02562 * 21 20 11 24 24 C 1.39850 * 119.65623 * 359.44602 * 6 4 3 25 25 C 1.37909 * 119.82143 * 0.25370 * 24 6 4 26 26 C 1.50692 * 119.91358 * 179.97438 * 25 24 6 27 27 H 1.09002 * 109.46693 * 269.97294 * 1 2 3 28 28 H 1.08998 * 109.47903 * 29.97613 * 1 2 3 29 29 H 1.09002 * 109.47228 * 149.97886 * 1 2 3 30 30 H 1.07999 * 119.91250 * 0.02900 * 3 2 1 31 31 H 1.09002 * 109.47148 * 270.29613 * 5 4 3 32 32 H 1.09003 * 109.47247 * 30.29641 * 5 4 3 33 33 H 1.09001 * 109.47296 * 150.29770 * 5 4 3 34 34 H 1.07995 * 120.00005 * 359.72109 * 7 6 4 35 35 H 1.07995 * 120.00183 * 0.02562 * 8 7 6 36 36 H 0.97000 * 119.99927 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.47351 * 203.92732 * 20 11 9 38 38 H 1.08998 * 109.46922 * 323.92267 * 20 11 9 39 39 H 0.96703 * 116.99391 * 180.02562 * 23 21 20 40 40 H 1.07996 * 120.09387 * 180.28164 * 24 6 4 41 41 H 1.09006 * 109.46813 * 90.00319 * 26 25 24 42 42 H 1.08992 * 109.47489 * 209.99967 * 26 25 24 43 43 H 1.08999 * 109.47609 * 330.00488 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2011 0.0000 4 6 3.5740 1.2095 0.0057 5 6 4.3214 2.5181 0.0122 6 6 4.2771 0.0002 -0.0007 7 6 5.7486 0.0003 -0.0007 8 6 6.4236 -1.1687 -0.0012 9 6 7.8858 -1.1685 -0.0018 10 8 8.4946 -0.1140 -0.0013 11 7 8.5598 -2.3356 -0.0028 12 6 9.9269 -2.3357 -0.0039 13 1 10.4671 -1.4399 0.2651 14 6 10.6223 -3.4894 -0.3514 15 7 10.0350 -4.4190 -1.0693 16 14 12.3916 -3.7163 0.2033 17 1 12.8181 -2.5336 0.9937 18 1 12.4944 -4.9367 1.0431 19 1 13.2689 -3.8586 -0.9863 20 6 7.8274 -3.6044 -0.0039 21 6 7.4459 -3.9631 -1.4170 22 8 7.7547 -3.2340 -2.3296 23 8 6.7632 -5.0926 -1.6617 24 6 3.5743 -1.2089 -0.0012 25 6 2.1953 -1.2006 -0.0006 26 6 1.4359 -2.5022 -0.0017 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3635 0.8901 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6510 2.1339 0.0005 31 1 4.5013 2.8388 -1.0139 32 1 3.7290 3.2724 0.5301 33 1 5.2746 2.3896 0.5250 34 1 6.2885 0.9356 -0.0003 35 1 5.8837 -2.1040 -0.0020 36 1 10.5200 -5.2232 -1.3119 37 1 8.4592 -4.3891 0.4122 38 1 6.9264 -3.5044 0.6014 39 1 6.5415 -5.2804 -2.5841 40 1 4.1100 -2.1466 -0.0016 41 1 1.2532 -2.8171 1.0257 42 1 0.4839 -2.3670 -0.5150 43 1 2.0213 -3.2640 -0.5166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738355417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:43 Heat of formation + Delta-G solvation = -103.643222 kcal Electronic energy + Delta-G solvation = -26436.293706 eV Core-core repulsion = 22639.046584 eV Total energy + Delta-G solvation = -3797.247122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32512 -40.71964 -39.93397 -37.14111 -36.46343 -35.97909 -34.38174 -33.78178 -32.02966 -30.10023 -29.61574 -28.29939 -26.85168 -25.80548 -24.01925 -23.06109 -22.55098 -20.61621 -19.66278 -19.09005 -18.76626 -18.37989 -17.43863 -17.08353 -16.64472 -16.25206 -16.11288 -15.92163 -15.48636 -15.33882 -15.15795 -14.75904 -14.39627 -14.19798 -13.82282 -13.74842 -13.68839 -13.53768 -13.49433 -13.43948 -12.96430 -12.86950 -12.68344 -12.55258 -12.53656 -12.38000 -12.18806 -12.13017 -11.83165 -11.61842 -11.58869 -11.03605 -10.94097 -10.57246 -9.95358 -9.53253 -8.93520 -8.52423 -5.98460 -0.38168 0.45472 1.04541 1.40457 1.41230 1.56078 1.69493 2.10657 2.31072 2.53892 2.84608 2.93019 3.16973 3.68476 3.74520 3.93054 3.93731 4.10025 4.11743 4.26597 4.29574 4.43002 4.64736 4.66250 4.68468 4.76737 4.77171 4.80260 4.85859 4.88580 4.98639 5.04322 5.11702 5.18235 5.27159 5.33269 5.38936 5.45248 5.57504 5.72810 5.77299 5.91054 5.99356 6.11940 6.35066 7.03484 7.22237 7.40495 7.88216 8.54464 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018806 B = 0.003554 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.555847 B = 7877.529147 C = 9000.293365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.081 4.081 3 C -0.124 4.124 4 C -0.078 4.078 5 C -0.120 4.120 6 C -0.089 4.089 7 C -0.045 4.045 8 C -0.195 4.195 9 C 0.466 3.534 10 O -0.634 6.634 11 N -0.429 5.429 12 C -0.344 4.344 13 H 0.081 0.919 14 C 0.002 3.998 15 N -0.885 5.885 16 Si 0.997 3.003 17 H -0.272 1.272 18 H -0.256 1.256 19 H -0.282 1.282 20 C 0.139 3.861 21 C 0.497 3.503 22 O -0.548 6.548 23 O -0.516 6.516 24 C -0.111 4.111 25 C -0.103 4.103 26 C -0.115 4.115 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.135 0.865 36 H 0.279 0.721 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.414 0.586 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.631 0.632 3.522 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C -0.142 4.142 4 C -0.078 4.078 5 C -0.177 4.177 6 C -0.089 4.089 7 C -0.065 4.065 8 C -0.215 4.215 9 C 0.260 3.740 10 O -0.523 6.523 11 N -0.146 5.146 12 C -0.471 4.471 13 H 0.099 0.901 14 C -0.201 4.201 15 N -0.523 5.523 16 Si 0.819 3.181 17 H -0.197 1.197 18 H -0.180 1.180 19 H -0.208 1.208 20 C 0.014 3.986 21 C 0.339 3.661 22 O -0.436 6.436 23 O -0.328 6.328 24 C -0.129 4.129 25 C -0.103 4.103 26 C -0.171 4.171 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.166 0.834 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.153 0.847 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.274 0.726 40 H 0.141 0.859 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.071 1.171 3.602 20.425 hybrid contribution 1.527 -0.315 -0.884 1.793 sum -18.543 0.855 2.717 18.761 Atomic orbital electron populations 1.20937 0.88743 1.04007 1.03393 1.20280 0.97767 0.92015 0.98038 1.21107 0.92510 0.98895 1.01646 1.20289 0.94615 0.94438 0.98451 1.20896 1.00114 0.93697 1.02961 1.18905 0.91212 0.94349 1.04429 1.22300 0.92809 0.97839 0.93594 1.22938 0.92202 0.99818 1.06577 1.18659 0.88838 0.83654 0.82822 1.90579 1.71475 1.32105 1.58172 1.43473 1.06089 1.03761 1.61245 1.19728 0.81369 0.99755 1.46264 0.90146 1.26086 1.04490 0.95293 0.94244 1.69845 1.40438 1.10147 1.31846 0.84844 0.76261 0.78824 0.78127 1.19693 1.18043 1.20765 1.20912 0.98246 0.88930 0.90511 1.23725 0.71873 0.77407 0.93091 1.90615 1.52009 1.53255 1.47768 1.84441 1.69143 1.41982 1.37216 1.21410 0.94540 0.97093 0.99891 1.19984 0.92788 0.96737 1.00787 1.20909 1.00332 0.92579 1.03294 0.89904 0.90440 0.90005 0.83386 0.90696 0.89032 0.92374 0.86297 0.84738 0.91119 0.85844 0.86291 0.72626 0.85854 0.90077 0.89403 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.59 71.23 0.68 -0.69 16 2 C -0.08 -1.60 5.89 -19.78 -0.12 -1.71 16 3 C -0.12 -2.61 9.33 22.23 0.21 -2.40 16 4 C -0.08 -2.05 5.92 -19.55 -0.12 -2.17 16 5 C -0.12 -2.79 9.52 71.24 0.68 -2.11 16 6 C -0.09 -2.79 5.87 -20.15 -0.12 -2.91 16 7 C -0.04 -1.71 8.89 23.86 0.21 -1.50 16 8 C -0.19 -8.25 8.48 23.60 0.20 -8.05 16 9 C 0.47 25.07 7.33 86.32 0.63 25.70 16 10 O -0.63 -38.86 15.87 -4.55 -0.07 -38.93 16 11 N -0.43 -22.98 2.17 -644.65 -1.40 -24.38 16 12 C -0.34 -19.90 9.33 84.14 0.79 -19.12 16 13 H 0.08 5.02 7.37 -2.91 -0.02 5.00 16 14 C 0.00 0.08 4.87 84.98 0.41 0.49 16 15 N -0.88 -46.10 9.28 21.69 0.20 -45.90 16 16 Si 1.00 42.05 29.61 68.60 2.03 44.08 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 20 C 0.14 6.13 4.84 85.63 0.41 6.54 16 21 C 0.50 22.01 6.23 71.24 0.44 22.46 16 22 O -0.55 -29.46 16.78 21.98 0.37 -29.10 16 23 O -0.52 -17.39 13.42 -51.46 -0.69 -18.08 16 24 C -0.11 -3.11 9.06 22.58 0.20 -2.91 16 25 C -0.10 -2.29 5.87 -19.91 -0.12 -2.41 16 26 C -0.11 -1.80 9.59 71.23 0.68 -1.12 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 29 H 0.08 0.81 5.92 -2.39 -0.01 0.79 16 30 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 33 H 0.06 1.54 6.33 -2.39 -0.02 1.52 16 34 H 0.12 4.85 5.82 -2.91 -0.02 4.83 16 35 H 0.14 4.90 4.25 -2.91 -0.01 4.89 16 36 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 37 H 0.12 5.53 6.37 -2.39 -0.02 5.51 16 38 H 0.12 4.16 6.45 -2.39 -0.02 4.15 16 39 H 0.41 10.46 9.10 -74.06 -0.67 9.79 16 40 H 0.12 3.35 6.17 -2.91 -0.02 3.34 16 41 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.09 1.03 5.92 -2.39 -0.01 1.02 16 43 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 Total: -1.00 -78.72 357.82 5.93 -72.79 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.39 Total: 31.42 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 5.09 Total: 8.10 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -1.20 Total: -70.28 kcal Atomic # 8 Polarization: -85.72 SS G_CDS: -0.39 Total: -86.11 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -78.72 5.93 -72.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738355417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.850 kcal (2) G-P(sol) polarization free energy of solvation -78.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds