Wall clock time and date at job start Tue Mar 31 2020 12:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34512 * 125.79196 * 2 1 4 4 C 1.41377 * 106.84107 * 180.02562 * 3 2 1 5 5 C 1.34509 * 106.84611 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.79291 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47335 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47021 * 119.99680 * 6 5 4 9 9 C 1.50698 * 109.47454 * 239.99596 * 6 5 4 10 10 O 1.21280 * 120.00244 * 274.92518 * 9 6 5 11 11 N 1.34774 * 119.99638 * 94.91768 * 9 6 5 12 12 C 1.46505 * 120.00290 * 354.55637 * 11 9 6 13 13 C 1.50701 * 109.47067 * 94.87266 * 12 11 9 14 14 H 1.07998 * 120.00180 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99671 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00275 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99886 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47029 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47657 * 119.99617 * 17 15 13 20 20 H 1.48498 * 109.47317 * 239.99707 * 17 15 13 21 21 C 1.46504 * 119.99988 * 174.82927 * 11 9 6 22 22 C 1.50703 * 109.47014 * 90.00206 * 21 11 9 23 23 C 1.34513 * 125.79121 * 89.71938 * 22 21 11 24 24 C 1.41384 * 106.84311 * 179.89013 * 23 22 21 25 25 C 1.34517 * 106.83700 * 0.36951 * 24 23 22 26 26 O 1.34299 * 125.78759 * 270.02436 * 22 21 11 27 27 O 1.34304 * 108.41977 * 0.25908 * 5 4 3 28 28 H 1.08997 * 109.46855 * 90.00241 * 1 2 3 29 29 H 1.09004 * 109.47190 * 209.99658 * 1 2 3 30 30 H 1.08994 * 109.47336 * 330.00000 * 1 2 3 31 31 H 1.07997 * 126.57537 * 0.02562 * 3 2 1 32 32 H 1.08005 * 126.57732 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.47534 * 295.00479 * 8 6 5 34 34 H 1.08997 * 109.47220 * 55.00792 * 8 6 5 35 35 H 1.09000 * 109.47285 * 175.00251 * 8 6 5 36 36 H 1.08997 * 109.47055 * 214.87204 * 12 11 9 37 37 H 1.09001 * 109.46462 * 334.86909 * 12 11 9 38 38 H 0.96997 * 120.00191 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.47007 * 210.00048 * 21 11 9 40 40 H 1.08999 * 109.46658 * 330.00196 * 21 11 9 41 41 H 1.08004 * 126.57744 * 0.02562 * 23 22 21 42 42 H 1.07994 * 126.58275 * 180.16582 * 24 23 22 43 43 H 1.08003 * 125.78616 * 179.75268 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6379 -0.0030 7 1 5.6886 -1.0501 -0.0027 8 6 4.7308 -2.5211 1.2458 9 6 4.7298 -2.5063 -1.2339 10 8 4.0808 -3.5308 -1.2321 11 7 5.4145 -2.1442 -2.3369 12 6 6.1005 -0.8505 -2.3815 13 6 7.5419 -1.0321 -1.9810 14 1 7.9101 -2.0130 -1.7190 15 6 8.3903 0.0542 -1.9481 16 7 7.9419 1.2487 -2.2667 17 14 10.1772 -0.1710 -1.4523 18 1 10.4289 -1.6018 -1.1444 19 1 11.0584 0.2581 -2.5679 20 1 10.4648 0.6516 -0.2499 21 6 5.4678 -3.0419 -3.4935 22 6 4.3155 -2.7404 -4.4168 23 6 4.3296 -1.8549 -5.4292 24 6 3.0489 -1.8957 -6.0269 25 6 2.3264 -2.7978 -5.3388 26 8 3.0987 -3.3063 -4.3648 27 8 2.2925 -1.0895 -0.0073 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.9665 2.1203 0.0004 32 1 4.5212 1.2433 -0.0004 33 1 4.8496 -1.9004 2.1339 34 1 3.7746 -3.0422 1.2919 35 1 5.5400 -3.2501 1.2011 36 1 6.0525 -0.4486 -3.3935 37 1 5.6162 -0.1586 -1.6924 38 1 8.5389 2.0129 -2.2439 39 1 6.4077 -2.8939 -4.0252 40 1 5.4010 -4.0756 -3.1544 41 1 5.1605 -1.2336 -5.7294 42 1 2.7140 -1.3120 -6.8715 43 1 1.2992 -3.0673 -5.5360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742605092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:44 Heat of formation + Delta-G solvation = -10.649290 kcal Electronic energy + Delta-G solvation = -27410.648734 eV Core-core repulsion = 23617.434132 eV Total energy + Delta-G solvation = -3793.214602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.27539 -42.13018 -39.19633 -35.27672 -33.86651 -32.82387 -32.77155 -32.48741 -30.86088 -30.17021 -27.35885 -26.31764 -25.70448 -23.43079 -22.57932 -21.43356 -21.30261 -20.37054 -19.85100 -18.44077 -17.17510 -16.71800 -16.40908 -16.16270 -15.83249 -15.60148 -14.98970 -14.69348 -14.44433 -14.12134 -13.52959 -13.27089 -13.06925 -12.92466 -12.79628 -12.46412 -12.43948 -12.39076 -12.37765 -12.21280 -11.91247 -11.71430 -11.56556 -11.33322 -11.15370 -11.04485 -10.93348 -10.65950 -10.20621 -9.84272 -9.54294 -9.51338 -9.20143 -8.63382 -8.18485 -7.90308 -7.83697 -6.24027 -4.32911 1.99879 2.09261 2.89456 2.97026 3.08716 3.18299 3.27764 3.31013 3.34765 3.55332 3.95531 4.28503 4.90330 5.07262 5.09714 5.16085 5.20196 5.37123 5.38053 5.41810 5.42735 5.49536 5.57201 5.73404 5.75134 5.85176 6.03478 6.07164 6.14369 6.19595 6.27477 6.30537 6.36117 6.44640 6.45672 6.56024 6.66119 6.86730 6.90530 7.15827 7.40479 7.56192 7.56358 7.69656 7.97054 8.21348 8.71382 8.89582 9.35827 10.82388 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008822 B = 0.006166 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3173.219325 B = 4539.848786 C = 6234.484564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.028 4.028 3 C -0.210 4.210 4 C -0.194 4.194 5 C 0.007 3.993 6 C -0.031 4.031 7 H 0.139 0.861 8 C -0.130 4.130 9 C 0.524 3.476 10 O -0.553 6.553 11 N -0.589 5.589 12 C 0.233 3.767 13 C -0.544 4.544 14 H 0.064 0.936 15 C 0.067 3.933 16 N -0.887 5.887 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.196 3.804 22 C -0.014 4.014 23 C -0.203 4.203 24 C -0.216 4.216 25 C -0.053 4.053 26 O -0.165 6.165 27 O -0.166 6.166 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.265 0.735 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.203 -1.904 0.441 10.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.229 4.229 4 C -0.213 4.213 5 C -0.043 4.043 6 C -0.052 4.052 7 H 0.157 0.843 8 C -0.188 4.188 9 C 0.311 3.689 10 O -0.432 6.432 11 N -0.319 5.319 12 C 0.114 3.886 13 C -0.582 4.582 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.073 3.927 22 C -0.066 4.066 23 C -0.223 4.223 24 C -0.236 4.236 25 C -0.122 4.122 26 O -0.060 6.060 27 O -0.063 6.063 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -10.647 -2.756 0.636 11.017 hybrid contribution 1.110 0.728 -0.198 1.342 sum -9.537 -2.029 0.437 9.760 Atomic orbital electron populations 1.20220 0.85625 1.03511 1.03151 1.22362 0.93871 0.84523 1.07042 1.21509 0.92803 0.99043 1.09553 1.21685 0.98396 0.93670 1.07541 1.21829 0.82333 0.93844 1.06321 1.20015 0.94609 0.95867 0.94723 0.84286 1.21624 1.03208 0.99036 0.94909 1.20280 0.78534 0.85741 0.84328 1.90625 1.42060 1.26696 1.83801 1.48304 1.50417 1.21110 1.12108 1.19569 0.91746 0.78244 0.99058 1.21540 0.94419 0.94923 1.47340 0.91737 1.24941 0.98935 0.94957 0.94796 1.69938 1.36044 0.99128 1.47345 0.86473 0.84418 0.78486 0.78328 1.19560 1.20850 1.20786 1.19719 0.92022 0.95580 0.85409 1.23225 0.86100 0.97770 0.99503 1.21666 0.99189 1.02549 0.98913 1.21772 0.94939 1.03108 1.03751 1.23942 0.97332 0.99660 0.91225 1.84112 1.21364 1.54772 1.45783 1.83994 1.16303 1.34671 1.71284 0.90513 0.90866 0.89695 0.83791 0.82794 0.91812 0.91686 0.91514 0.94482 0.93745 0.92482 0.86822 0.89367 0.83368 0.83925 0.78806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 36.00 0.38 -0.38 16 2 C -0.03 -0.44 7.32 -35.63 -0.26 -0.70 16 3 C -0.21 -3.38 10.81 -39.71 -0.43 -3.81 16 4 C -0.19 -3.54 10.17 -39.71 -0.40 -3.94 16 5 C 0.01 0.14 5.55 -35.63 -0.20 -0.06 16 6 C -0.03 -0.61 2.30 -92.93 -0.21 -0.82 16 7 H 0.14 2.79 6.16 -51.93 -0.32 2.47 16 8 C -0.13 -2.17 8.75 37.16 0.33 -1.85 16 9 C 0.52 11.33 6.64 -10.99 -0.07 11.26 16 10 O -0.55 -12.97 16.00 5.56 0.09 -12.89 16 11 N -0.59 -12.59 2.44 -176.43 -0.43 -13.02 16 12 C 0.23 5.42 4.75 -5.19 -0.02 5.40 16 13 C -0.54 -13.40 8.99 -34.44 -0.31 -13.71 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -23.47 13.29 55.43 0.74 -22.73 16 17 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.20 3.76 5.92 -5.19 -0.03 3.73 16 22 C -0.01 -0.27 6.90 -35.62 -0.25 -0.51 16 23 C -0.20 -3.58 10.81 -39.70 -0.43 -4.00 16 24 C -0.22 -3.34 10.91 -39.70 -0.43 -3.77 16 25 C -0.05 -0.82 12.09 29.42 0.36 -0.46 16 26 O -0.17 -3.16 10.65 5.71 0.06 -3.10 16 27 O -0.17 -3.20 10.65 5.67 0.06 -3.14 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.15 2.78 8.06 -52.48 -0.42 2.36 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.12 8.02 -51.93 -0.42 0.71 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 37 H 0.04 1.08 5.58 -51.93 -0.29 0.79 16 38 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 39 H 0.11 2.01 8.07 -51.93 -0.42 1.59 16 40 H 0.09 1.66 7.50 -51.93 -0.39 1.27 16 41 H 0.15 2.50 8.06 -52.48 -0.42 2.08 16 42 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 43 H 0.20 2.13 8.06 -52.48 -0.42 1.70 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -30.77 372.23 -7.02 -37.79 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.03 Total: 8.84 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.09 Total: -12.02 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.31 Total: -35.75 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.21 Total: -19.13 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.77 -7.02 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742605092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.137 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds