Wall clock time and date at job start Tue Mar 31 2020 12:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34512 * 125.79196 * 2 1 4 4 C 1.41377 * 106.84107 * 180.02562 * 3 2 1 5 5 C 1.34509 * 106.84611 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.79291 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47335 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47021 * 119.99680 * 6 5 4 9 9 C 1.50698 * 109.47454 * 239.99596 * 6 5 4 10 10 O 1.21280 * 120.00244 * 274.92518 * 9 6 5 11 11 N 1.34774 * 119.99638 * 94.91768 * 9 6 5 12 12 C 1.46505 * 120.00290 * 354.55637 * 11 9 6 13 13 C 1.50701 * 109.47067 * 94.87266 * 12 11 9 14 14 H 1.07998 * 120.00180 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99671 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00275 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99886 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47029 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47657 * 119.99617 * 17 15 13 20 20 H 1.48498 * 109.47317 * 239.99707 * 17 15 13 21 21 C 1.46504 * 119.99988 * 174.82927 * 11 9 6 22 22 C 1.50703 * 109.47014 * 90.00206 * 21 11 9 23 23 C 1.34513 * 125.79121 * 89.71938 * 22 21 11 24 24 C 1.41384 * 106.84311 * 179.89013 * 23 22 21 25 25 C 1.34517 * 106.83700 * 0.36951 * 24 23 22 26 26 O 1.34299 * 125.78759 * 270.02436 * 22 21 11 27 27 O 1.34304 * 108.41977 * 0.25908 * 5 4 3 28 28 H 1.08997 * 109.46855 * 90.00241 * 1 2 3 29 29 H 1.09004 * 109.47190 * 209.99658 * 1 2 3 30 30 H 1.08994 * 109.47336 * 330.00000 * 1 2 3 31 31 H 1.07997 * 126.57537 * 0.02562 * 3 2 1 32 32 H 1.08005 * 126.57732 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.47534 * 295.00479 * 8 6 5 34 34 H 1.08997 * 109.47220 * 55.00792 * 8 6 5 35 35 H 1.09000 * 109.47285 * 175.00251 * 8 6 5 36 36 H 1.08997 * 109.47055 * 214.87204 * 12 11 9 37 37 H 1.09001 * 109.46462 * 334.86909 * 12 11 9 38 38 H 0.96997 * 120.00191 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.47007 * 210.00048 * 21 11 9 40 40 H 1.08999 * 109.46658 * 330.00196 * 21 11 9 41 41 H 1.08004 * 126.57744 * 0.02562 * 23 22 21 42 42 H 1.07994 * 126.58275 * 180.16582 * 24 23 22 43 43 H 1.08003 * 125.78616 * 179.75268 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6379 -0.0030 7 1 5.6886 -1.0501 -0.0027 8 6 4.7308 -2.5211 1.2458 9 6 4.7298 -2.5063 -1.2339 10 8 4.0808 -3.5308 -1.2321 11 7 5.4145 -2.1442 -2.3369 12 6 6.1005 -0.8505 -2.3815 13 6 7.5419 -1.0321 -1.9810 14 1 7.9101 -2.0130 -1.7190 15 6 8.3903 0.0542 -1.9481 16 7 7.9419 1.2487 -2.2667 17 14 10.1772 -0.1710 -1.4523 18 1 10.4289 -1.6018 -1.1444 19 1 11.0584 0.2581 -2.5679 20 1 10.4648 0.6516 -0.2499 21 6 5.4678 -3.0419 -3.4935 22 6 4.3155 -2.7404 -4.4168 23 6 4.3296 -1.8549 -5.4292 24 6 3.0489 -1.8957 -6.0269 25 6 2.3264 -2.7978 -5.3388 26 8 3.0987 -3.3063 -4.3648 27 8 2.2925 -1.0895 -0.0073 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.9665 2.1203 0.0004 32 1 4.5212 1.2433 -0.0004 33 1 4.8496 -1.9004 2.1339 34 1 3.7746 -3.0422 1.2919 35 1 5.5400 -3.2501 1.2011 36 1 6.0525 -0.4486 -3.3935 37 1 5.6162 -0.1586 -1.6924 38 1 8.5389 2.0129 -2.2439 39 1 6.4077 -2.8939 -4.0252 40 1 5.4010 -4.0756 -3.1544 41 1 5.1605 -1.2336 -5.7294 42 1 2.7140 -1.3120 -6.8715 43 1 1.2992 -3.0673 -5.5360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742605092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:43 Heat of formation + Delta-G solvation = -26.636804 kcal Electronic energy + Delta-G solvation = -27411.342005 eV Core-core repulsion = 23617.434132 eV Total energy + Delta-G solvation = -3793.907873 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.64265 -43.47820 -40.87881 -37.02397 -35.35454 -34.62421 -34.11814 -33.88073 -32.08696 -31.59804 -29.18701 -27.64192 -27.07459 -25.18166 -24.14376 -22.80059 -22.63466 -21.73286 -21.22355 -20.01800 -18.79997 -18.36050 -18.02358 -17.76256 -17.22616 -17.05496 -16.54432 -16.18030 -16.12914 -15.50567 -15.04135 -14.68325 -14.46832 -14.26737 -13.95825 -13.91464 -13.78745 -13.74100 -13.72478 -13.58866 -13.46016 -13.14636 -13.02716 -12.88492 -12.67746 -12.63143 -12.48426 -12.34045 -11.99544 -11.71772 -11.01952 -10.86816 -10.77598 -10.57529 -9.72567 -9.44978 -9.20456 -8.19209 -6.34504 0.63007 0.74741 1.43471 1.44430 1.48550 1.57490 1.64807 1.67680 2.00916 2.16016 2.34306 2.46073 3.11866 3.57060 3.62315 3.81976 3.92534 4.05989 4.10231 4.13075 4.15499 4.30029 4.36463 4.52416 4.56603 4.69547 4.73532 4.78683 4.80937 4.84859 4.88765 4.93024 4.99593 5.05004 5.15123 5.16591 5.20026 5.27398 5.57462 5.61860 5.63878 5.74283 6.02713 6.20738 6.22393 6.45918 6.77904 7.15623 7.38449 8.87045 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008822 B = 0.006166 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3173.219325 B = 4539.848786 C = 6234.484564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.026 4.026 3 C -0.219 4.219 4 C -0.201 4.201 5 C -0.018 4.018 6 C -0.029 4.029 7 H 0.126 0.874 8 C -0.123 4.123 9 C 0.519 3.481 10 O -0.576 6.576 11 N -0.591 5.591 12 C 0.252 3.748 13 C -0.548 4.548 14 H 0.061 0.939 15 C 0.027 3.973 16 N -0.916 5.916 17 Si 0.957 3.043 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.278 1.278 21 C 0.194 3.806 22 C -0.044 4.044 23 C -0.207 4.207 24 C -0.222 4.222 25 C -0.046 4.046 26 O -0.191 6.191 27 O -0.189 6.189 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.174 0.826 32 H 0.148 0.852 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.018 0.982 37 H 0.033 0.967 38 H 0.268 0.732 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.149 0.851 42 H 0.174 0.826 43 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.444 -1.411 0.352 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.076 4.076 3 C -0.238 4.238 4 C -0.220 4.220 5 C -0.068 4.068 6 C -0.050 4.050 7 H 0.144 0.856 8 C -0.181 4.181 9 C 0.308 3.692 10 O -0.456 6.456 11 N -0.321 5.321 12 C 0.132 3.868 13 C -0.586 4.586 14 H 0.079 0.921 15 C -0.175 4.175 16 N -0.555 5.555 17 Si 0.782 3.218 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.204 1.204 21 C 0.071 3.929 22 C -0.095 4.095 23 C -0.227 4.227 24 C -0.240 4.240 25 C -0.113 4.113 26 O -0.088 6.088 27 O -0.086 6.086 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.191 0.809 32 H 0.166 0.834 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.139 0.861 40 H 0.104 0.896 41 H 0.167 0.833 42 H 0.192 0.808 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -11.883 -2.267 0.538 12.109 hybrid contribution 1.382 0.602 -0.242 1.527 sum -10.501 -1.665 0.295 10.636 Atomic orbital electron populations 1.20485 0.81984 1.05479 1.04462 1.23369 0.95841 0.83607 1.04809 1.21842 0.91608 1.00631 1.09671 1.21828 0.99485 0.93495 1.07228 1.21769 0.82547 0.94061 1.08441 1.19951 0.94506 0.95813 0.94701 0.85602 1.21608 1.02847 0.98989 0.94635 1.20701 0.77936 0.85669 0.84908 1.90594 1.43019 1.27724 1.84312 1.48320 1.50091 1.20702 1.12967 1.19188 0.91374 0.78876 0.97344 1.21678 0.95054 0.94784 1.47107 0.92080 1.25620 1.02525 0.94619 0.94692 1.70030 1.37390 0.99804 1.48258 0.85519 0.79871 0.78446 0.77936 1.19194 1.20658 1.20415 1.19780 0.93064 0.94985 0.85057 1.23084 0.86454 0.99439 1.00545 1.21894 1.00406 1.01782 0.98631 1.22137 0.93750 1.03540 1.04611 1.24872 0.98523 0.98471 0.89473 1.84088 1.21700 1.55639 1.47323 1.83982 1.16475 1.36321 1.71838 0.89338 0.90048 0.86589 0.80899 0.83450 0.89505 0.92472 0.91177 0.96414 0.94909 0.92309 0.86068 0.89577 0.83347 0.80806 0.74529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.42 71.24 0.74 -0.57 16 2 C -0.03 -0.81 7.32 24.83 0.18 -0.63 16 3 C -0.22 -6.77 10.81 22.19 0.24 -6.53 16 4 C -0.20 -7.43 10.17 22.19 0.23 -7.21 16 5 C -0.02 -0.72 5.55 24.83 0.14 -0.58 16 6 C -0.03 -1.15 2.30 -12.29 -0.03 -1.18 16 7 H 0.13 5.28 6.16 -2.38 -0.01 5.26 16 8 C -0.12 -4.15 8.75 71.98 0.63 -3.52 16 9 C 0.52 23.19 6.64 87.66 0.58 23.77 16 10 O -0.58 -27.78 16.00 -3.03 -0.05 -27.83 16 11 N -0.59 -26.15 2.44 -830.49 -2.03 -28.17 16 12 C 0.25 12.14 4.75 85.63 0.41 12.55 16 13 C -0.55 -27.48 8.99 25.60 0.23 -27.25 16 14 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 15 C 0.03 1.34 5.46 84.66 0.46 1.80 16 16 N -0.92 -49.01 13.29 21.45 0.28 -48.73 16 17 Si 0.96 40.35 29.54 68.60 2.03 42.38 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 21 C 0.19 7.71 5.92 85.63 0.51 8.21 16 22 C -0.04 -1.70 6.90 24.83 0.17 -1.53 16 23 C -0.21 -7.27 10.81 22.19 0.24 -7.03 16 24 C -0.22 -6.42 10.91 22.19 0.24 -6.18 16 25 C -0.05 -1.32 12.09 66.97 0.81 -0.51 16 26 O -0.19 -7.29 10.65 -2.48 -0.03 -7.31 16 27 O -0.19 -7.28 10.65 -2.61 -0.03 -7.31 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.17 4.17 8.06 -2.91 -0.02 4.14 16 32 H 0.15 5.52 8.06 -2.91 -0.02 5.49 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 2.00 8.02 -2.39 -0.02 1.98 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.02 0.92 8.11 -2.39 -0.02 0.90 16 37 H 0.03 1.66 5.58 -2.39 -0.01 1.64 16 38 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 39 H 0.12 4.46 8.07 -2.39 -0.02 4.44 16 40 H 0.09 3.39 7.50 -2.39 -0.02 3.37 16 41 H 0.15 5.08 8.06 -2.91 -0.02 5.06 16 42 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 43 H 0.24 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -67.13 372.23 6.97 -60.16 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 1.01 Total: 33.18 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 5.78 Total: -16.37 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -1.74 Total: -76.90 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.10 Total: -42.45 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -67.13 6.97 -60.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742605092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.522 kcal (2) G-P(sol) polarization free energy of solvation -67.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds