Wall clock time and date at job start Tue Mar 31 2020 12:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34517 * 125.78973 * 2 1 4 4 C 1.41379 * 106.84020 * 179.75135 * 3 2 1 5 5 C 1.34508 * 106.84163 * 0.37908 * 4 3 2 6 6 C 1.50700 * 125.78968 * 179.89150 * 5 4 3 7 7 H 1.08999 * 109.47566 * 359.70902 * 6 5 4 8 8 C 1.53007 * 109.46960 * 239.71113 * 6 5 4 9 9 C 1.50703 * 109.47304 * 119.71566 * 6 5 4 10 10 O 1.21276 * 120.00330 * 14.28282 * 9 6 5 11 11 N 1.34777 * 119.99827 * 194.28306 * 9 6 5 12 12 C 1.46503 * 120.00190 * 3.93660 * 11 9 6 13 13 C 1.50699 * 109.47017 * 87.57658 * 12 11 9 14 14 H 1.07995 * 120.00656 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99724 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99982 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00138 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46796 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47304 * 119.99676 * 17 15 13 20 20 H 1.48501 * 109.46923 * 239.99913 * 17 15 13 21 21 C 1.46497 * 120.00007 * 183.93364 * 11 9 6 22 22 C 1.50703 * 109.47053 * 84.70277 * 21 11 9 23 23 C 1.34511 * 125.78926 * 90.00371 * 22 21 11 24 24 C 1.41381 * 106.83876 * 180.02562 * 23 22 21 25 25 C 1.34509 * 106.84527 * 359.97438 * 24 23 22 26 26 O 1.34306 * 125.78751 * 269.69108 * 22 21 11 27 27 O 1.34300 * 108.42255 * 359.62208 * 5 4 3 28 28 H 1.08997 * 109.47311 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47350 * 299.99647 * 1 2 3 30 30 H 1.08998 * 109.47286 * 59.99480 * 1 2 3 31 31 H 1.08003 * 126.57775 * 0.02562 * 3 2 1 32 32 H 1.07998 * 126.58125 * 180.23885 * 4 3 2 33 33 H 1.08999 * 109.47234 * 184.36349 * 8 6 5 34 34 H 1.08998 * 109.47013 * 304.36730 * 8 6 5 35 35 H 1.08997 * 109.46991 * 64.36695 * 8 6 5 36 36 H 1.09003 * 109.47389 * 207.57721 * 12 11 9 37 37 H 1.09002 * 109.47101 * 327.57647 * 12 11 9 38 38 H 0.97003 * 119.99539 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.47168 * 204.70446 * 21 11 9 40 40 H 1.09001 * 109.47119 * 324.70419 * 21 11 9 41 41 H 1.08003 * 126.58322 * 359.95874 * 23 22 21 42 42 H 1.08008 * 126.57931 * 179.97438 * 24 23 22 43 43 H 1.07996 * 125.79479 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0059 5 6 3.5813 -0.7121 0.0006 6 6 4.7705 -1.6378 0.0016 7 1 5.6885 -1.0501 0.0021 8 6 4.7308 -2.5204 -1.2476 9 6 4.7297 -2.5068 1.2321 10 8 3.7139 -2.5780 1.8908 11 7 5.8221 -3.2049 1.6006 12 6 7.0744 -3.0527 0.8557 13 6 7.8624 -1.9023 1.4275 14 1 7.4695 -1.3404 2.2619 15 6 9.0844 -1.5664 0.8846 16 7 9.5627 -2.2503 -0.1320 17 14 10.0615 -0.1410 1.5937 18 1 9.3100 0.4602 2.7246 19 1 11.3757 -0.6342 2.0785 20 1 10.2753 0.8847 0.5412 21 6 5.7573 -4.1158 2.7461 22 6 5.2251 -5.4519 2.2959 23 6 5.9646 -6.4842 1.8522 24 6 5.0643 -7.5286 1.5399 25 6 3.8285 -7.0723 1.8120 26 8 3.9325 -5.8159 2.2752 27 8 2.2924 -1.0894 0.0003 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.9665 2.1205 0.0004 32 1 4.5211 1.2433 0.0111 33 1 5.5468 -3.2421 -1.2087 34 1 3.7790 -3.0500 -1.2881 35 1 4.8383 -1.8980 -2.1359 36 1 7.6590 -3.9691 0.9365 37 1 6.8518 -2.8550 -0.1928 38 1 10.4223 -2.0137 -0.5141 39 1 6.7555 -4.2446 3.1648 40 1 5.0959 -3.6984 3.5053 41 1 7.0397 -6.5099 1.7524 42 1 5.3197 -8.5055 1.1565 43 1 2.9091 -7.6243 1.6844 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742605093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:46 Heat of formation + Delta-G solvation = -23.867417 kcal Electronic energy + Delta-G solvation = -27080.172752 eV Core-core repulsion = 23286.384968 eV Total energy + Delta-G solvation = -3793.787783 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.55806 -43.45290 -40.86550 -36.96184 -35.40734 -34.64122 -34.04100 -33.85317 -32.24973 -31.38806 -29.14206 -27.43080 -27.16466 -25.27897 -24.13245 -22.70285 -22.60666 -21.80677 -21.13190 -20.06968 -18.80142 -18.25933 -17.84806 -17.79944 -17.08928 -16.99021 -16.47674 -16.23843 -16.08012 -15.45311 -15.27130 -14.65351 -14.54048 -14.15230 -13.96537 -13.91486 -13.70989 -13.68833 -13.67466 -13.62154 -13.38954 -13.26027 -12.93383 -12.90219 -12.77565 -12.52687 -12.47560 -12.38826 -12.04399 -11.68685 -10.92342 -10.82445 -10.72110 -10.54921 -9.68310 -9.42282 -9.17200 -8.19802 -6.33574 0.69332 0.80391 1.41776 1.46211 1.54403 1.58736 1.64145 1.72670 2.03213 2.19328 2.37017 2.47527 3.11370 3.55966 3.59800 3.84940 3.97510 4.06478 4.11367 4.16354 4.19203 4.28896 4.37219 4.53625 4.55082 4.65245 4.74073 4.77059 4.82012 4.86504 4.91034 4.92117 4.99645 5.02912 5.12679 5.19136 5.24828 5.34263 5.60882 5.65110 5.69358 5.77362 6.05529 6.24631 6.30652 6.46692 6.78749 7.19752 7.39195 8.86076 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.007721 B = 0.006361 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.528036 B = 4400.529141 C = 7347.114851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.032 4.032 3 C -0.220 4.220 4 C -0.216 4.216 5 C -0.007 4.007 6 C -0.025 4.025 7 H 0.128 0.872 8 C -0.132 4.132 9 C 0.519 3.481 10 O -0.578 6.578 11 N -0.591 5.591 12 C 0.244 3.756 13 C -0.549 4.549 14 H 0.052 0.948 15 C 0.030 3.970 16 N -0.914 5.914 17 Si 0.951 3.049 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.277 1.277 21 C 0.195 3.805 22 C -0.045 4.045 23 C -0.202 4.202 24 C -0.220 4.220 25 C -0.047 4.047 26 O -0.193 6.193 27 O -0.181 6.181 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.174 0.826 32 H 0.156 0.844 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.028 0.972 37 H 0.045 0.955 38 H 0.268 0.732 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.153 0.847 42 H 0.175 0.825 43 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 -1.967 -1.362 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 C -0.239 4.239 4 C -0.235 4.235 5 C -0.058 4.058 6 C -0.046 4.046 7 H 0.146 0.854 8 C -0.189 4.189 9 C 0.308 3.692 10 O -0.459 6.459 11 N -0.321 5.321 12 C 0.124 3.876 13 C -0.588 4.588 14 H 0.070 0.930 15 C -0.171 4.171 16 N -0.552 5.552 17 Si 0.777 3.223 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.203 1.203 21 C 0.072 3.928 22 C -0.096 4.096 23 C -0.222 4.222 24 C -0.239 4.239 25 C -0.114 4.114 26 O -0.089 6.089 27 O -0.078 6.078 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.192 0.808 32 H 0.174 0.826 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.140 0.860 40 H 0.096 0.904 41 H 0.171 0.829 42 H 0.192 0.808 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -12.544 -2.132 -1.044 12.767 hybrid contribution 1.302 0.590 0.329 1.467 sum -11.242 -1.542 -0.714 11.370 Atomic orbital electron populations 1.20460 0.82325 1.04434 1.05205 1.23355 0.95849 0.83903 1.05059 1.21796 0.91646 1.00505 1.09944 1.21857 0.99684 0.93325 1.08605 1.21800 0.82686 0.94194 1.07075 1.19865 0.94478 0.95477 0.94804 0.85389 1.21739 1.02328 0.99496 0.95327 1.20670 0.82528 0.79833 0.86159 1.90617 1.32759 1.66532 1.56003 1.48235 1.11996 1.40663 1.31216 1.19394 0.79333 0.96646 0.92203 1.21675 1.04104 1.15883 1.17105 0.92960 1.25534 0.97960 0.98670 0.94970 1.70002 1.20069 1.41027 1.24143 0.85604 0.78586 0.79575 0.78510 1.19811 1.20447 1.20254 1.19718 1.01904 0.82740 0.88437 1.23026 0.81212 0.98291 1.07068 1.21892 1.01439 0.93723 1.05186 1.22141 0.92179 1.01894 1.07708 1.24864 1.01732 0.82948 1.01852 1.84101 1.28530 1.30417 1.65861 1.83983 1.16488 1.36160 1.71138 0.90873 0.88204 0.87308 0.80819 0.82583 0.91047 0.92685 0.89365 0.95418 0.93706 0.92233 0.85983 0.90426 0.82948 0.80761 0.74725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.42 71.23 0.74 -0.57 16 2 C -0.03 -0.96 7.32 24.83 0.18 -0.78 16 3 C -0.22 -6.44 10.81 22.19 0.24 -6.20 16 4 C -0.22 -7.42 10.78 22.19 0.24 -7.18 16 5 C -0.01 -0.28 5.34 24.83 0.13 -0.14 16 6 C -0.03 -1.01 2.29 -12.28 -0.03 -1.04 16 7 H 0.13 5.30 6.95 -2.39 -0.02 5.28 16 8 C -0.13 -4.61 8.81 71.98 0.63 -3.98 16 9 C 0.52 23.18 6.83 87.66 0.60 23.78 16 10 O -0.58 -28.63 15.36 8.43 0.13 -28.50 16 11 N -0.59 -25.45 2.46 -830.49 -2.04 -27.49 16 12 C 0.24 11.26 4.66 85.63 0.40 11.66 16 13 C -0.55 -27.53 8.89 25.60 0.23 -27.30 16 14 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 15 C 0.03 1.51 5.46 84.65 0.46 1.97 16 16 N -0.91 -48.09 13.29 21.45 0.28 -47.80 16 17 Si 0.95 40.61 29.54 68.60 2.03 42.63 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 20 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 21 C 0.20 7.59 5.91 85.63 0.51 8.09 16 22 C -0.04 -1.66 6.86 24.83 0.17 -1.49 16 23 C -0.20 -6.59 10.81 22.19 0.24 -6.35 16 24 C -0.22 -5.94 10.91 22.19 0.24 -5.70 16 25 C -0.05 -1.27 12.09 66.97 0.81 -0.46 16 26 O -0.19 -7.09 10.65 -2.57 -0.03 -7.11 16 27 O -0.18 -6.99 10.12 8.98 0.09 -6.90 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.16 4.89 8.06 -2.91 -0.02 4.87 16 33 H 0.07 2.59 6.04 -2.39 -0.01 2.58 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.03 1.34 8.05 -2.39 -0.02 1.32 16 37 H 0.05 2.10 4.63 -2.39 -0.01 2.09 16 38 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 39 H 0.12 4.36 8.03 -2.39 -0.02 4.34 16 40 H 0.08 3.11 7.53 -2.39 -0.02 3.09 16 41 H 0.15 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 43 H 0.24 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -67.12 369.26 7.27 -59.84 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: 1.01 Total: 31.02 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 5.80 Total: -15.69 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -1.76 Total: -75.30 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: 0.19 Total: -42.51 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Total: -67.12 7.27 -59.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742605093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.975 kcal (2) G-P(sol) polarization free energy of solvation -67.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds