Wall clock time and date at job start Tue Mar 31 2020 12:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.50222 * 2 1 4 4 O 1.21208 * 120.00308 * 239.93646 * 3 2 1 5 5 O 1.34312 * 119.99978 * 59.93012 * 3 2 1 6 6 C 1.34922 * 117.00048 * 179.97438 * 5 3 2 7 7 H 1.07999 * 119.99972 * 0.02562 * 6 5 3 8 8 C 1.38758 * 119.99818 * 180.02562 * 6 5 3 9 9 N 1.31439 * 119.99717 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99972 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.46947 * 90.00191 * 10 8 6 12 12 H 1.48501 * 109.47000 * 209.99964 * 10 8 6 13 13 H 1.48504 * 109.47241 * 330.00037 * 10 8 6 14 14 C 1.53043 * 109.49770 * 239.93339 * 2 1 3 15 15 C 1.53038 * 109.53858 * 301.41747 * 14 2 1 16 16 C 1.53197 * 109.31234 * 298.63316 * 15 14 2 17 17 N 1.46923 * 108.77261 * 54.63504 * 16 15 14 18 18 C 1.34781 * 120.62963 * 126.39431 * 17 16 15 19 19 O 1.21551 * 119.99951 * 176.17482 * 18 17 16 20 20 C 1.47852 * 119.99631 * 356.17871 * 18 17 16 21 21 C 1.39569 * 120.14712 * 50.69569 * 20 18 17 22 22 C 1.37962 * 119.85103 * 179.74514 * 21 20 18 23 23 C 1.38355 * 120.14457 * 0.52962 * 22 21 20 24 24 C 1.38363 * 120.29117 * 359.75129 * 23 22 21 25 25 C 1.37952 * 120.14549 * 359.96625 * 24 23 22 26 26 C 1.46922 * 118.74132 * 306.38851 * 17 16 15 27 27 H 1.08999 * 109.47273 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47079 * 300.06976 * 1 2 3 29 29 H 1.08999 * 109.46837 * 60.06335 * 1 2 3 30 30 H 0.97008 * 119.99862 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46152 * 181.39405 * 14 2 1 32 32 H 1.09001 * 109.45633 * 61.43796 * 14 2 1 33 33 H 1.08994 * 109.50036 * 58.58475 * 15 14 2 34 34 H 1.09003 * 109.49812 * 178.68622 * 15 14 2 35 35 H 1.08995 * 109.58414 * 174.42507 * 16 15 14 36 36 H 1.08999 * 109.58316 * 294.84832 * 16 15 14 37 37 H 1.08004 * 120.07490 * 0.02562 * 21 20 18 38 38 H 1.08001 * 119.92444 * 180.27863 * 22 21 20 39 39 H 1.08000 * 119.85279 * 179.71816 * 23 22 21 40 40 H 1.08000 * 119.92374 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.07412 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.58621 * 293.82631 * 26 17 16 43 43 H 1.09001 * 109.58564 * 173.39953 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0331 1.4205 0.0000 4 8 2.7311 1.8163 -0.9084 5 8 1.7079 2.2481 1.0066 6 6 2.1915 3.5062 0.9458 7 1 2.8097 3.8074 0.1130 8 6 1.8946 4.4130 1.9532 9 7 2.3653 5.6388 1.8937 10 14 0.8259 3.8917 3.3940 11 1 1.6852 3.3490 4.4767 12 1 0.0725 5.0663 3.9018 13 1 -0.1294 2.8456 2.9487 14 6 2.0408 -0.7228 -1.2486 15 6 1.5029 -2.1554 -1.2666 16 6 2.0139 -2.9041 -0.0316 17 7 1.6515 -2.1385 1.1689 18 6 0.9743 -2.7225 2.1773 19 8 0.7409 -2.0988 3.1942 20 6 0.5153 -4.1219 2.0466 21 6 1.4092 -5.1189 1.6529 22 6 0.9756 -6.4236 1.5379 23 6 -0.3446 -6.7428 1.8014 24 6 -1.2372 -5.7582 2.1864 25 6 -0.8152 -4.4507 2.3108 26 6 2.0413 -0.7242 1.2494 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5149 0.8893 29 1 -0.3633 0.5129 -0.8906 30 1 2.1574 6.2729 2.5978 31 1 3.1305 -0.7441 -1.2355 32 1 1.6988 -0.1952 -2.1389 33 1 0.4133 -2.1351 -1.2547 34 1 1.8481 -2.6623 -2.1678 35 1 1.5553 -3.8918 0.0126 36 1 3.0978 -3.0043 -0.0876 37 1 2.4391 -4.8703 1.4430 38 1 1.6674 -7.1967 1.2377 39 1 -0.6800 -7.7649 1.7055 40 1 -2.2665 -6.0139 2.3902 41 1 -1.5128 -3.6831 2.6119 42 1 3.1275 -0.6468 1.2978 43 1 1.6007 -0.2738 2.1388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745342946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:27 Heat of formation + Delta-G solvation = -82.788031 kcal Electronic energy + Delta-G solvation = -27152.744731 eV Core-core repulsion = 23356.401958 eV Total energy + Delta-G solvation = -3796.342773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.93676 -39.64620 -38.55483 -37.40924 -35.36553 -33.71649 -32.31784 -31.84261 -31.32150 -31.24319 -27.06971 -26.01363 -25.65914 -23.73401 -23.30090 -22.70521 -21.35735 -19.73234 -18.45399 -17.98430 -17.68268 -16.83943 -16.48058 -16.15204 -15.58361 -15.24295 -14.97968 -14.85167 -14.47349 -14.33281 -13.87911 -13.83589 -13.68907 -13.46320 -13.11426 -12.99444 -12.75549 -12.56859 -12.33653 -12.00974 -11.77988 -11.60787 -11.45197 -11.32094 -11.07536 -10.91563 -10.84524 -10.48161 -10.41954 -10.29498 -9.97602 -9.66831 -9.29796 -9.17819 -9.09608 -8.67685 -8.64517 -6.35299 -4.10905 0.71655 1.02155 2.55904 2.81709 3.17539 3.29349 3.40862 3.45241 3.45936 4.03484 4.24573 4.28776 4.54450 4.59521 4.72353 4.78174 4.80463 4.85127 4.97682 5.06010 5.15066 5.16627 5.20581 5.30599 5.45326 5.55004 5.64433 5.64721 5.73398 5.77859 5.92259 5.95160 6.00753 6.04121 6.07765 6.11707 6.19396 6.27579 6.37371 6.44535 6.55175 6.63378 7.29558 7.74474 8.04948 8.06547 8.61670 9.03422 9.70184 10.72965 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019343 B = 0.003818 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.205044 B = 7331.113382 C = 8292.441387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 C 0.419 3.581 4 O -0.536 6.536 5 O -0.245 6.245 6 C -0.382 4.382 7 H 0.109 0.891 8 C 0.068 3.932 9 N -0.874 5.874 10 Si 0.900 3.100 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.258 1.258 14 C -0.097 4.097 15 C -0.136 4.136 16 C 0.094 3.906 17 N -0.600 5.600 18 C 0.557 3.443 19 O -0.527 6.527 20 C -0.119 4.119 21 C -0.093 4.093 22 C -0.125 4.125 23 C -0.104 4.104 24 C -0.123 4.123 25 C -0.071 4.071 26 C 0.124 3.876 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.279 0.721 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.076 0.924 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.431 -26.483 -2.868 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.057 4.057 3 C 0.263 3.737 4 O -0.431 6.431 5 O -0.154 6.154 6 C -0.457 4.457 7 H 0.127 0.873 8 C -0.136 4.136 9 N -0.513 5.513 10 Si 0.725 3.275 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.182 1.182 14 C -0.134 4.134 15 C -0.174 4.174 16 C -0.028 4.028 17 N -0.333 5.333 18 C 0.345 3.655 19 O -0.403 6.403 20 C -0.122 4.122 21 C -0.111 4.111 22 C -0.143 4.143 23 C -0.122 4.122 24 C -0.141 4.141 25 C -0.090 4.090 26 C 0.002 3.998 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.094 0.906 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.358 -25.800 -2.437 26.463 hybrid contribution -0.298 0.079 0.554 0.634 sum -5.657 -25.721 -1.883 26.403 Atomic orbital electron populations 1.21839 0.92312 1.02027 1.03290 1.20604 0.97789 0.90333 0.96987 1.22559 0.81565 0.87546 0.81982 1.90591 1.38185 1.77186 1.37116 1.83533 1.64791 1.23410 1.43626 1.20646 1.31622 0.82578 1.10870 0.87337 1.24527 0.96931 0.94063 0.98044 1.69608 1.43590 1.03745 1.34403 0.86286 0.80949 0.78599 0.81619 1.19691 1.20750 1.18212 1.21392 1.01361 0.93961 0.96710 1.22013 1.01840 0.96083 0.97455 1.22128 1.00622 0.95763 0.84313 1.48002 1.55743 1.11449 1.18076 1.18405 0.77636 0.86280 0.83182 1.90834 1.56229 1.64679 1.28581 1.19927 0.95336 0.93421 1.03475 1.21344 0.99517 0.92678 0.97575 1.21110 0.96242 0.96069 1.00874 1.21336 0.93541 0.99508 0.97817 1.21141 1.00145 0.92606 1.00204 1.21201 0.94378 0.96968 0.96456 1.21677 1.00297 0.79152 0.98639 0.91911 0.91247 0.92006 0.91040 0.90852 0.90511 0.90894 0.90249 0.88802 0.90870 0.85184 0.85402 0.85687 0.85370 0.85179 0.90567 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 7.92 37.16 0.29 -1.90 16 2 C -0.05 -0.95 0.71 -155.54 -0.11 -1.06 16 3 C 0.42 9.82 6.51 36.00 0.23 10.05 16 4 O -0.54 -14.04 15.22 -19.05 -0.29 -14.33 16 5 O -0.25 -6.54 8.41 -20.71 -0.17 -6.71 16 6 C -0.38 -11.46 10.10 30.92 0.31 -11.14 16 7 H 0.11 3.58 7.09 -52.49 -0.37 3.20 16 8 C 0.07 1.99 5.49 -17.53 -0.10 1.89 16 9 N -0.87 -26.27 13.96 55.48 0.77 -25.49 16 10 Si 0.90 22.21 28.62 -169.99 -4.86 17.34 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 14 C -0.10 -1.36 4.01 -26.69 -0.11 -1.46 16 15 C -0.14 -1.35 5.74 -26.61 -0.15 -1.51 16 16 C 0.09 0.90 5.38 -3.71 -0.02 0.88 16 17 N -0.60 -7.97 2.41 -173.88 -0.42 -8.39 16 18 C 0.56 8.08 7.23 -12.32 -0.09 7.99 16 19 O -0.53 -9.87 16.48 5.32 0.09 -9.79 16 20 C -0.12 -1.33 5.00 -104.97 -0.53 -1.85 16 21 C -0.09 -0.80 7.36 -39.19 -0.29 -1.09 16 22 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 23 C -0.10 -0.70 10.04 -39.49 -0.40 -1.10 16 24 C -0.12 -0.96 10.03 -39.64 -0.40 -1.35 16 25 C -0.07 -0.73 9.74 -39.19 -0.38 -1.11 16 26 C 0.12 2.05 5.03 -3.71 -0.02 2.03 16 27 H 0.06 0.85 5.97 -51.93 -0.31 0.54 16 28 H 0.07 1.24 8.11 -51.93 -0.42 0.81 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.28 7.68 8.31 -40.82 -0.34 7.35 16 31 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 32 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 33 H 0.07 0.73 6.33 -51.93 -0.33 0.40 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.74 4.55 -51.93 -0.24 0.50 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.13 0.95 7.07 -52.48 -0.37 0.58 16 38 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.11 2.04 7.03 -51.93 -0.36 1.67 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -35.31 352.19 -7.48 -42.79 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.76 Total: 1.25 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -2.14 Total: -1.98 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.36 Total: -33.89 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.38 Total: -30.83 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.86 Total: 17.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.31 -7.48 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745342946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.994 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds