Wall clock time and date at job start Tue Mar 31 2020 12:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.49739 * 2 1 4 4 O 1.21212 * 120.00182 * 120.00109 * 3 2 1 5 5 O 1.34309 * 120.00156 * 299.99876 * 3 2 1 6 6 C 1.34922 * 117.00597 * 180.02562 * 5 3 2 7 7 H 1.08005 * 119.99338 * 359.97438 * 6 5 3 8 8 C 1.38748 * 120.00498 * 180.02562 * 6 5 3 9 9 N 1.31448 * 119.99964 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00300 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47210 * 89.99663 * 10 8 6 12 12 H 1.48494 * 109.47233 * 209.99857 * 10 8 6 13 13 H 1.48501 * 109.46924 * 329.99839 * 10 8 6 14 14 C 1.53041 * 109.50076 * 120.06219 * 2 1 3 15 15 C 1.53045 * 109.53248 * 58.58531 * 14 2 1 16 16 C 1.53190 * 109.31398 * 61.36965 * 15 14 2 17 17 N 1.46923 * 108.77630 * 305.36196 * 16 15 14 18 18 C 1.34772 * 120.63410 * 233.63281 * 17 16 15 19 19 O 1.21547 * 120.00428 * 175.13101 * 18 17 16 20 20 C 1.47851 * 119.99821 * 355.12586 * 18 17 16 21 21 C 1.39575 * 120.14482 * 321.75150 * 20 18 17 22 22 C 1.37958 * 119.85199 * 179.74354 * 21 20 18 23 23 C 1.38359 * 120.14299 * 0.53182 * 22 21 20 24 24 C 1.38353 * 120.29269 * 359.74208 * 23 22 21 25 25 C 1.37954 * 120.14711 * 359.97438 * 24 23 22 26 26 C 1.46929 * 118.73492 * 53.60958 * 17 16 15 27 27 H 1.09000 * 109.47148 * 299.93333 * 1 2 3 28 28 H 1.08999 * 109.46696 * 59.93677 * 1 2 3 29 29 H 1.08995 * 109.46861 * 179.97438 * 1 2 3 30 30 H 0.96991 * 119.99813 * 179.97438 * 9 8 6 31 31 H 1.08993 * 109.46459 * 178.60665 * 14 2 1 32 32 H 1.09003 * 109.45894 * 298.58823 * 14 2 1 33 33 H 1.09011 * 109.49682 * 181.32066 * 15 14 2 34 34 H 1.08995 * 109.49985 * 301.41248 * 15 14 2 35 35 H 1.09002 * 109.58618 * 65.14974 * 16 15 14 36 36 H 1.08997 * 109.58594 * 185.42883 * 16 15 14 37 37 H 1.07998 * 120.07370 * 359.97438 * 21 20 18 38 38 H 1.07999 * 119.92467 * 180.27569 * 22 21 20 39 39 H 1.08006 * 119.85030 * 179.76509 * 23 22 21 40 40 H 1.08003 * 119.92547 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.07639 * 180.02562 * 25 24 23 42 42 H 1.09004 * 109.58378 * 186.60850 * 26 17 16 43 43 H 1.08996 * 109.59269 * 66.17934 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4206 0.0000 4 8 2.7300 1.8167 0.9091 5 8 1.7089 2.2477 -1.0073 6 6 2.1923 3.5059 -0.9465 7 1 2.8095 3.8075 -0.1131 8 6 1.8957 4.4126 -1.9540 9 7 1.1441 4.0457 -2.9681 10 14 2.5643 6.1548 -1.8694 11 1 3.8843 6.2118 -2.5475 12 1 1.6203 7.0807 -2.5451 13 1 2.7201 6.5567 -0.4484 14 6 2.0409 -0.7227 1.2486 15 6 1.5030 -2.1554 1.2666 16 6 2.0140 -2.9040 0.0316 17 7 1.6516 -2.1386 -1.1689 18 6 0.9740 -2.7224 -2.1771 19 8 0.6028 -2.0582 -3.1249 20 6 0.6824 -4.1711 -2.1302 21 6 1.6306 -5.0610 -1.6232 22 6 1.3501 -6.4110 -1.5774 23 6 0.1362 -6.8845 -2.0428 24 6 -0.8058 -6.0084 -2.5519 25 6 -0.5402 -4.6555 -2.5980 26 6 2.0414 -0.7242 -1.2493 27 1 -0.3633 0.5128 0.8906 28 1 -0.3633 0.5148 -0.8894 29 1 -0.3633 -1.0276 -0.0005 30 1 0.9364 4.6796 -3.6722 31 1 3.1305 -0.7440 1.2355 32 1 1.6985 -0.1953 2.1390 33 1 1.8480 -2.6622 2.1679 34 1 0.4133 -2.1351 1.2547 35 1 3.0980 -3.0043 0.0877 36 1 1.5574 -3.8928 -0.0112 37 1 2.5804 -4.6931 -1.2641 38 1 2.0812 -7.1001 -1.1812 39 1 -0.0770 -7.9428 -2.0082 40 1 -1.7513 -6.3845 -2.9140 41 1 -1.2766 -3.9725 -2.9952 42 1 1.6008 -0.2738 -2.1388 43 1 3.1275 -0.6466 -1.2978 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745342948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:29 Heat of formation + Delta-G solvation = -81.939562 kcal Electronic energy + Delta-G solvation = -27026.612099 eV Core-core repulsion = 23230.306118 eV Total energy + Delta-G solvation = -3796.305981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83427 -39.47900 -38.40149 -37.25521 -35.15948 -33.63335 -32.16521 -31.70803 -31.22386 -31.10017 -26.90103 -25.88723 -25.50328 -23.72468 -23.22052 -22.57424 -21.39062 -19.71916 -18.41866 -17.66545 -17.54870 -16.75449 -16.31839 -16.03593 -15.39669 -15.04764 -14.81001 -14.73825 -14.40325 -14.18736 -14.07548 -13.74061 -13.52925 -13.38408 -13.11814 -12.86657 -12.73772 -12.50274 -11.96330 -11.82958 -11.54696 -11.44296 -11.36186 -11.20946 -10.98137 -10.78153 -10.70899 -10.41709 -10.34447 -10.30196 -9.86009 -9.71695 -9.21648 -9.09958 -8.93049 -8.54907 -8.51724 -6.36552 -4.05047 0.74608 1.09736 2.74174 2.93512 3.14552 3.21197 3.27093 3.55348 3.59205 3.94810 4.34805 4.46538 4.60837 4.66969 4.79945 4.91605 4.92896 4.95282 5.08337 5.14146 5.23188 5.27267 5.31536 5.41710 5.53736 5.65569 5.72318 5.76191 5.84362 5.92996 6.06108 6.10403 6.13296 6.15955 6.18063 6.20776 6.37158 6.42799 6.52900 6.62786 6.66520 6.93532 7.42589 7.44190 7.98521 8.20998 8.73044 9.11374 9.89346 10.80718 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022840 B = 0.003336 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.600300 B = 8390.630847 C = 9169.252609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 C 0.406 3.594 4 O -0.555 6.555 5 O -0.207 6.207 6 C -0.384 4.384 7 H 0.095 0.905 8 C 0.043 3.957 9 N -0.860 5.860 10 Si 0.941 3.059 11 H -0.273 1.273 12 H -0.278 1.278 13 H -0.267 1.267 14 C -0.096 4.096 15 C -0.137 4.137 16 C 0.093 3.907 17 N -0.601 5.601 18 C 0.555 3.445 19 O -0.524 6.524 20 C -0.122 4.122 21 C -0.093 4.093 22 C -0.129 4.129 23 C -0.102 4.102 24 C -0.126 4.126 25 C -0.066 4.066 26 C 0.126 3.874 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.270 0.730 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.111 0.889 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.678 -22.221 4.537 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 C 0.252 3.748 4 O -0.452 6.452 5 O -0.113 6.113 6 C -0.460 4.460 7 H 0.112 0.888 8 C -0.161 4.161 9 N -0.496 5.496 10 Si 0.766 3.234 11 H -0.199 1.199 12 H -0.203 1.203 13 H -0.192 1.192 14 C -0.134 4.134 15 C -0.175 4.175 16 C -0.030 4.030 17 N -0.334 5.334 18 C 0.343 3.657 19 O -0.400 6.400 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.147 4.147 23 C -0.120 4.120 24 C -0.144 4.144 25 C -0.085 4.085 26 C 0.004 3.996 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.129 0.871 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.792 -21.628 4.032 22.073 hybrid contribution 0.395 0.891 0.112 0.981 sum -1.397 -20.737 4.144 21.193 Atomic orbital electron populations 1.21800 0.92337 1.01738 1.03276 1.20546 0.97770 0.90560 0.96612 1.22797 0.81594 0.88030 0.82421 1.90543 1.39353 1.77481 1.37807 1.83888 1.63235 1.22415 1.41758 1.21209 1.31759 0.83787 1.09292 0.88786 1.25328 0.96355 0.99802 0.94650 1.70005 1.34317 1.35783 1.09535 0.85709 0.78548 0.80279 0.78864 1.19900 1.20340 1.19159 1.21381 1.01148 0.93909 0.96922 1.22026 1.01869 0.96201 0.97355 1.22218 1.00440 0.95839 0.84498 1.47968 1.55961 1.11577 1.17847 1.18372 0.77791 0.86950 0.82599 1.90844 1.51203 1.64470 1.33494 1.19983 0.96420 0.93225 1.02921 1.21494 0.99108 0.93309 0.97198 1.21111 0.97491 0.95153 1.00896 1.21339 0.93681 0.99869 0.97132 1.21146 0.99912 0.92992 1.00376 1.21267 0.95730 0.95783 0.95737 1.21675 0.99868 0.78925 0.99095 0.92448 0.90854 0.92226 0.92056 0.91082 0.90741 0.90406 0.90912 0.91050 0.88677 0.84907 0.85452 0.85741 0.85401 0.84955 0.87060 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 7.92 37.16 0.29 -2.09 16 2 C -0.05 -0.99 0.71 -155.54 -0.11 -1.10 16 3 C 0.41 10.05 6.51 36.01 0.23 10.29 16 4 O -0.55 -14.83 15.22 -19.05 -0.29 -15.12 16 5 O -0.21 -5.96 9.58 -20.70 -0.20 -6.16 16 6 C -0.38 -11.49 9.65 30.92 0.30 -11.19 16 7 H 0.09 2.83 6.86 -52.48 -0.36 2.47 16 8 C 0.04 1.24 5.49 -17.53 -0.10 1.14 16 9 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 10 Si 0.94 21.66 29.55 -169.99 -5.02 16.64 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 14 C -0.10 -1.45 4.01 -26.69 -0.11 -1.56 16 15 C -0.14 -1.50 5.74 -26.61 -0.15 -1.65 16 16 C 0.09 0.97 4.84 -3.71 -0.02 0.96 16 17 N -0.60 -8.70 2.41 -173.88 -0.42 -9.12 16 18 C 0.55 8.70 7.36 -12.33 -0.09 8.61 16 19 O -0.52 -10.52 16.31 5.32 0.09 -10.43 16 20 C -0.12 -1.49 5.22 -104.97 -0.55 -2.04 16 21 C -0.09 -0.87 7.35 -39.19 -0.29 -1.15 16 22 C -0.13 -0.97 10.03 -39.64 -0.40 -1.37 16 23 C -0.10 -0.75 10.04 -39.49 -0.40 -1.15 16 24 C -0.13 -1.07 10.03 -39.64 -0.40 -1.47 16 25 C -0.07 -0.74 9.63 -39.19 -0.38 -1.12 16 26 C 0.13 2.28 5.05 -3.71 -0.02 2.26 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.49 8.11 -51.93 -0.42 1.07 16 29 H 0.06 0.91 5.97 -51.93 -0.31 0.60 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 32 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 33 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.07 0.82 6.33 -51.93 -0.33 0.49 16 35 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.10 0.83 4.55 -51.93 -0.24 0.59 16 37 H 0.13 1.07 6.32 -52.49 -0.33 0.74 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.13 1.51 8.04 -52.49 -0.42 1.09 16 42 H 0.11 2.38 7.00 -51.93 -0.36 2.02 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -35.66 351.99 -7.66 -43.32 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.71 Total: 3.12 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.17 Total: -2.62 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.34 Total: -34.06 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.40 Total: -31.70 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.66 -7.66 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745342948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.621 kcal (2) G-P(sol) polarization free energy of solvation -35.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds