Wall clock time and date at job start Tue Mar 31 2020 12:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.49739 * 2 1 4 4 O 1.21212 * 120.00182 * 120.00109 * 3 2 1 5 5 O 1.34309 * 120.00156 * 299.99876 * 3 2 1 6 6 C 1.34922 * 117.00597 * 180.02562 * 5 3 2 7 7 H 1.08005 * 119.99338 * 359.97438 * 6 5 3 8 8 C 1.38748 * 120.00498 * 180.02562 * 6 5 3 9 9 N 1.31448 * 119.99964 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00300 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47210 * 89.99663 * 10 8 6 12 12 H 1.48494 * 109.47233 * 209.99857 * 10 8 6 13 13 H 1.48501 * 109.46924 * 329.99839 * 10 8 6 14 14 C 1.53041 * 109.50076 * 120.06219 * 2 1 3 15 15 C 1.53045 * 109.53248 * 58.58531 * 14 2 1 16 16 C 1.53190 * 109.31398 * 61.36965 * 15 14 2 17 17 N 1.46923 * 108.77630 * 305.36196 * 16 15 14 18 18 C 1.34772 * 120.63410 * 233.63281 * 17 16 15 19 19 O 1.21547 * 120.00428 * 175.13101 * 18 17 16 20 20 C 1.47851 * 119.99821 * 355.12586 * 18 17 16 21 21 C 1.39575 * 120.14482 * 321.75150 * 20 18 17 22 22 C 1.37958 * 119.85199 * 179.74354 * 21 20 18 23 23 C 1.38359 * 120.14299 * 0.53182 * 22 21 20 24 24 C 1.38353 * 120.29269 * 359.74208 * 23 22 21 25 25 C 1.37954 * 120.14711 * 359.97438 * 24 23 22 26 26 C 1.46929 * 118.73492 * 53.60958 * 17 16 15 27 27 H 1.09000 * 109.47148 * 299.93333 * 1 2 3 28 28 H 1.08999 * 109.46696 * 59.93677 * 1 2 3 29 29 H 1.08995 * 109.46861 * 179.97438 * 1 2 3 30 30 H 0.96991 * 119.99813 * 179.97438 * 9 8 6 31 31 H 1.08993 * 109.46459 * 178.60665 * 14 2 1 32 32 H 1.09003 * 109.45894 * 298.58823 * 14 2 1 33 33 H 1.09011 * 109.49682 * 181.32066 * 15 14 2 34 34 H 1.08995 * 109.49985 * 301.41248 * 15 14 2 35 35 H 1.09002 * 109.58618 * 65.14974 * 16 15 14 36 36 H 1.08997 * 109.58594 * 185.42883 * 16 15 14 37 37 H 1.07998 * 120.07370 * 359.97438 * 21 20 18 38 38 H 1.07999 * 119.92467 * 180.27569 * 22 21 20 39 39 H 1.08006 * 119.85030 * 179.76509 * 23 22 21 40 40 H 1.08003 * 119.92547 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.07639 * 180.02562 * 25 24 23 42 42 H 1.09004 * 109.58378 * 186.60850 * 26 17 16 43 43 H 1.08996 * 109.59269 * 66.17934 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4206 0.0000 4 8 2.7300 1.8167 0.9091 5 8 1.7089 2.2477 -1.0073 6 6 2.1923 3.5059 -0.9465 7 1 2.8095 3.8075 -0.1131 8 6 1.8957 4.4126 -1.9540 9 7 1.1441 4.0457 -2.9681 10 14 2.5643 6.1548 -1.8694 11 1 3.8843 6.2118 -2.5475 12 1 1.6203 7.0807 -2.5451 13 1 2.7201 6.5567 -0.4484 14 6 2.0409 -0.7227 1.2486 15 6 1.5030 -2.1554 1.2666 16 6 2.0140 -2.9040 0.0316 17 7 1.6516 -2.1386 -1.1689 18 6 0.9740 -2.7224 -2.1771 19 8 0.6028 -2.0582 -3.1249 20 6 0.6824 -4.1711 -2.1302 21 6 1.6306 -5.0610 -1.6232 22 6 1.3501 -6.4110 -1.5774 23 6 0.1362 -6.8845 -2.0428 24 6 -0.8058 -6.0084 -2.5519 25 6 -0.5402 -4.6555 -2.5980 26 6 2.0414 -0.7242 -1.2493 27 1 -0.3633 0.5128 0.8906 28 1 -0.3633 0.5148 -0.8894 29 1 -0.3633 -1.0276 -0.0005 30 1 0.9364 4.6796 -3.6722 31 1 3.1305 -0.7440 1.2355 32 1 1.6985 -0.1953 2.1390 33 1 1.8480 -2.6622 2.1679 34 1 0.4133 -2.1351 1.2547 35 1 3.0980 -3.0043 0.0877 36 1 1.5574 -3.8928 -0.0112 37 1 2.5804 -4.6931 -1.2641 38 1 2.0812 -7.1001 -1.1812 39 1 -0.0770 -7.9428 -2.0082 40 1 -1.7513 -6.3845 -2.9140 41 1 -1.2766 -3.9725 -2.9952 42 1 1.6008 -0.2738 -2.1388 43 1 3.1275 -0.6466 -1.2978 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745342948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:29 Heat of formation + Delta-G solvation = -104.105421 kcal Electronic energy + Delta-G solvation = -27027.573283 eV Core-core repulsion = 23230.306118 eV Total energy + Delta-G solvation = -3797.267164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.11223 -41.08516 -39.53024 -38.64568 -37.20675 -35.02247 -34.32232 -32.88369 -32.02605 -31.87313 -28.31568 -27.76544 -26.92054 -25.17015 -24.14330 -23.38204 -22.79357 -20.98476 -19.94948 -19.76750 -18.75252 -18.07733 -17.65192 -17.11687 -16.96783 -16.43891 -16.32746 -16.26594 -15.78513 -15.34875 -15.33563 -14.96871 -14.66272 -14.59423 -14.37608 -14.16093 -13.86051 -13.72184 -13.55419 -13.20633 -13.13189 -12.90126 -12.62338 -12.44591 -12.29285 -12.21750 -12.11873 -12.05983 -11.97181 -11.82843 -11.52452 -11.13580 -10.84649 -10.73287 -9.96872 -9.83888 -9.70922 -8.56221 -6.37502 -0.02630 0.43824 1.22898 1.30245 1.48650 1.51126 1.69670 1.84382 2.09282 2.68064 2.84564 2.94136 3.33967 3.59697 3.68400 3.78194 3.91347 3.99657 4.04728 4.07921 4.26942 4.37464 4.42336 4.51061 4.52062 4.57221 4.59570 4.60685 4.72334 4.80449 4.83691 4.87941 4.98567 5.07189 5.10348 5.12776 5.15144 5.35447 5.40316 5.43425 5.47685 5.55628 5.79145 5.99495 6.30173 6.59798 6.87737 7.01932 7.73671 8.64087 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022840 B = 0.003336 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.600300 B = 8390.630847 C = 9169.252609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.047 4.047 3 C 0.404 3.596 4 O -0.575 6.575 5 O -0.239 6.239 6 C -0.423 4.423 7 H 0.083 0.917 8 C -0.006 4.006 9 N -0.903 5.903 10 Si 1.019 2.981 11 H -0.259 1.259 12 H -0.261 1.261 13 H -0.261 1.261 14 C -0.091 4.091 15 C -0.126 4.126 16 C 0.087 3.913 17 N -0.594 5.594 18 C 0.550 3.450 19 O -0.586 6.586 20 C -0.145 4.145 21 C -0.092 4.092 22 C -0.120 4.120 23 C -0.092 4.092 24 C -0.126 4.126 25 C -0.088 4.088 26 C 0.136 3.864 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.088 0.912 30 H 0.278 0.722 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.148 0.852 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.149 0.851 41 H 0.112 0.888 42 H 0.065 0.935 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 -25.605 6.348 26.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.049 4.049 3 C 0.251 3.749 4 O -0.473 6.473 5 O -0.147 6.147 6 C -0.498 4.498 7 H 0.101 0.899 8 C -0.206 4.206 9 N -0.540 5.540 10 Si 0.837 3.163 11 H -0.184 1.184 12 H -0.185 1.185 13 H -0.185 1.185 14 C -0.129 4.129 15 C -0.164 4.164 16 C -0.034 4.034 17 N -0.326 5.326 18 C 0.341 3.659 19 O -0.466 6.466 20 C -0.148 4.148 21 C -0.111 4.111 22 C -0.138 4.138 23 C -0.110 4.110 24 C -0.144 4.144 25 C -0.107 4.107 26 C 0.012 3.988 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.180 0.820 39 H 0.177 0.823 40 H 0.166 0.834 41 H 0.130 0.870 42 H 0.084 0.916 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.000 -25.063 5.886 25.764 hybrid contribution 0.139 1.784 -0.420 1.838 sum -0.861 -23.279 5.466 23.928 Atomic orbital electron populations 1.21725 0.91752 1.03088 1.01675 1.20710 0.98145 0.86952 0.99124 1.24093 0.80213 0.89752 0.80865 1.90498 1.40081 1.78470 1.38221 1.83935 1.64308 1.22788 1.43658 1.21456 1.33296 0.84969 1.10105 0.89888 1.26608 0.95968 1.04530 0.93495 1.70119 1.35470 1.37937 1.10434 0.84619 0.78538 0.73785 0.79368 1.18377 1.18481 1.18488 1.21422 1.01153 0.96253 0.94056 1.22043 1.01821 0.93214 0.99314 1.22630 1.02275 0.96309 0.82142 1.48010 1.55446 1.09921 1.19218 1.19111 0.76596 0.88533 0.81677 1.90806 1.53709 1.66242 1.35873 1.19751 0.98069 0.90896 1.06114 1.21667 0.98799 0.93851 0.96746 1.21528 0.98120 0.94575 0.99529 1.21801 0.92906 1.01325 0.94923 1.21403 1.01292 0.91732 0.99973 1.21285 0.95472 0.97075 0.96863 1.21245 0.99365 0.81382 0.96829 0.91852 0.94573 0.89313 0.91266 0.91175 0.91370 0.86191 0.90844 0.88668 0.85830 0.83442 0.81968 0.82339 0.83373 0.86980 0.91636 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 7.92 71.98 0.57 -4.10 16 2 C -0.05 -1.84 0.71 -52.85 -0.04 -1.88 16 3 C 0.40 21.16 6.51 71.24 0.46 21.62 16 4 O -0.57 -32.00 15.22 20.77 0.32 -31.68 16 5 O -0.24 -14.82 9.58 14.87 0.14 -14.67 16 6 C -0.42 -26.68 9.65 67.94 0.66 -26.02 16 7 H 0.08 5.26 6.86 -2.91 -0.02 5.24 16 8 C -0.01 -0.34 5.49 84.87 0.47 0.12 16 9 N -0.90 -56.35 13.67 21.62 0.30 -56.05 16 10 Si 1.02 45.22 29.55 68.60 2.03 47.25 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 12 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 13 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 14 C -0.09 -2.66 4.01 30.62 0.12 -2.54 16 15 C -0.13 -2.34 5.74 30.67 0.18 -2.16 16 16 C 0.09 1.56 4.84 86.36 0.42 1.98 16 17 N -0.59 -17.29 2.41 -822.32 -1.98 -19.27 16 18 C 0.55 17.96 7.36 86.79 0.64 18.59 16 19 O -0.59 -25.69 16.31 -3.86 -0.06 -25.76 16 20 C -0.15 -3.42 5.22 -20.09 -0.10 -3.53 16 21 C -0.09 -1.42 7.35 22.53 0.17 -1.25 16 22 C -0.12 -1.20 10.03 22.23 0.22 -0.98 16 23 C -0.09 -0.91 10.04 22.33 0.22 -0.69 16 24 C -0.13 -1.81 10.03 22.23 0.22 -1.59 16 25 C -0.09 -1.94 9.63 22.52 0.22 -1.72 16 26 C 0.14 5.19 5.05 86.36 0.44 5.63 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.04 1.59 8.11 -2.39 -0.02 1.57 16 29 H 0.09 2.75 5.97 -2.39 -0.01 2.74 16 30 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.07 2.07 8.13 -2.39 -0.02 2.05 16 32 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 33 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.07 1.40 6.33 -2.39 -0.02 1.38 16 35 H 0.10 1.34 8.10 -2.39 -0.02 1.33 16 36 H 0.12 1.63 4.55 -2.39 -0.01 1.62 16 37 H 0.15 1.77 6.32 -2.91 -0.02 1.75 16 38 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 39 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 40 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.11 2.80 8.04 -2.91 -0.02 2.78 16 42 H 0.07 3.13 7.00 -2.39 -0.02 3.11 16 43 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -86.60 351.99 6.62 -79.98 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 1.03 Total: 18.71 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 4.86 Total: 1.50 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -1.69 Total: -75.33 kcal Atomic # 8 Polarization: -72.50 SS G_CDS: 0.40 Total: -72.11 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -86.60 6.62 -79.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745342948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.128 kcal (2) G-P(sol) polarization free energy of solvation -86.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds