Wall clock time and date at job start Tue Mar 31 2020 11:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86801 * 120.00225 * 2 1 4 4 H 1.48497 * 109.47410 * 240.00473 * 3 2 1 5 5 H 1.48500 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47021 * 120.00105 * 3 2 1 7 7 C 1.38892 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00343 * 163.61977 * 7 2 1 9 9 N 1.37140 * 119.99755 * 343.62252 * 7 2 1 10 10 C 1.34774 * 119.99781 * 164.73827 * 9 7 2 11 11 O 1.21283 * 119.99897 * 174.95265 * 10 9 7 12 12 C 1.50696 * 120.00334 * 354.95618 * 10 9 7 13 13 O 1.45195 * 109.47413 * 179.97438 * 12 10 9 14 14 C 1.34233 * 117.00313 * 180.02562 * 13 12 10 15 15 O 1.20829 * 119.99760 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00318 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47399 * 179.97438 * 16 14 13 18 18 C 1.53776 * 113.61607 * 85.85845 * 17 16 14 19 19 C 1.54057 * 86.98721 * 140.02064 * 18 17 16 20 20 C 1.53777 * 113.61723 * 183.47053 * 17 16 14 21 21 C 1.39794 * 120.00204 * 344.74361 * 9 7 2 22 22 C 1.38958 * 120.07451 * 281.20945 * 21 9 7 23 23 C 1.38081 * 119.91949 * 179.79001 * 22 21 9 24 24 C 1.38306 * 120.07918 * 0.46358 * 23 22 21 25 25 C 1.38308 * 120.15632 * 359.78970 * 24 23 22 26 26 C 1.38093 * 120.07726 * 359.97381 * 25 24 23 27 27 H 0.97002 * 120.00188 * 5.01543 * 1 2 3 28 28 H 1.09004 * 109.46828 * 59.99914 * 12 10 9 29 29 H 1.09005 * 109.47261 * 300.00007 * 12 10 9 30 30 H 1.09000 * 109.46995 * 59.99182 * 16 14 13 31 31 H 1.09003 * 109.46926 * 299.99802 * 16 14 13 32 32 H 1.09002 * 112.84539 * 314.66689 * 17 16 14 33 33 H 1.08996 * 113.61688 * 254.61600 * 18 17 16 34 34 H 1.09003 * 113.61351 * 25.52109 * 18 17 16 35 35 H 1.08997 * 113.62129 * 220.02166 * 19 18 17 36 36 H 1.08997 * 113.60972 * 89.11605 * 19 18 17 37 37 H 1.09005 * 113.61529 * 334.48046 * 20 17 16 38 38 H 1.09000 * 113.61740 * 105.29754 * 20 17 16 39 39 H 1.08008 * 120.03932 * 359.97438 * 22 21 9 40 40 H 1.07998 * 119.95994 * 180.24889 * 23 22 21 41 41 H 1.07998 * 119.92673 * 179.76835 * 24 23 22 42 42 H 1.07997 * 119.96616 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.03954 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0087 -1.2028 -0.0005 8 1 3.0558 -1.2217 -0.2643 9 7 1.3647 -2.3665 0.3338 10 6 1.9286 -3.5559 0.0443 11 8 1.4047 -4.5830 0.4205 12 6 3.2101 -3.6096 -0.7467 13 8 3.6113 -4.9936 -0.9249 14 6 4.7420 -5.2166 -1.6132 15 8 5.3752 -4.2861 -2.0526 16 6 5.2209 -6.6275 -1.8388 17 6 6.5209 -6.6020 -2.6451 18 6 7.7798 -6.4301 -1.7789 19 6 8.4585 -7.4572 -2.7051 20 6 7.0511 -8.0003 -3.0035 21 6 0.1232 -2.3191 0.9748 22 6 0.0530 -2.0603 2.3383 23 6 -1.1752 -2.0099 2.9673 24 6 -2.3339 -2.2261 2.2439 25 6 -2.2674 -2.4893 0.8877 26 6 -1.0429 -2.5363 0.2511 27 1 -0.4850 0.8368 -0.0734 28 1 3.9913 -3.0715 -0.2097 29 1 3.0550 -3.1475 -1.7216 30 1 4.4631 -7.1848 -2.3895 31 1 5.3988 -7.1090 -0.8772 32 1 6.4789 -5.9201 -3.4944 33 1 8.2164 -5.4330 -1.8360 34 1 7.6561 -6.7811 -0.7543 35 1 9.0973 -8.1657 -2.1778 36 1 8.9462 -7.0090 -3.5708 37 1 6.7285 -8.7798 -2.3132 38 1 6.8984 -8.2707 -4.0484 39 1 0.9578 -1.8957 2.9047 40 1 -1.2308 -1.8047 4.0262 41 1 -3.2930 -2.1898 2.7392 42 1 -3.1742 -2.6573 0.3257 43 1 -0.9917 -2.7423 -0.8078 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745571256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:09 Heat of formation + Delta-G solvation = -64.836967 kcal Electronic energy + Delta-G solvation = -26059.090018 eV Core-core repulsion = 22263.525662 eV Total energy + Delta-G solvation = -3795.564356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.39162 -39.39710 -38.65449 -37.28208 -35.89808 -34.77111 -31.77736 -31.03176 -29.91769 -29.54558 -27.37525 -25.76304 -25.03758 -24.04017 -21.78499 -21.55140 -20.51583 -19.52496 -19.39188 -17.96741 -17.40929 -16.47924 -16.27803 -15.88276 -15.51957 -15.23804 -14.81706 -14.71091 -14.56086 -14.27970 -13.87036 -13.50358 -13.05336 -12.88984 -12.61292 -12.47065 -12.32420 -12.06721 -11.89560 -11.62674 -11.59266 -11.51164 -11.18871 -10.99719 -10.82730 -10.58423 -10.52061 -10.42251 -10.37800 -10.36228 -10.19622 -10.16688 -9.49167 -8.69255 -8.22958 -7.89985 -7.62227 -6.33725 -4.13280 2.40738 2.46690 2.47887 2.84520 3.05026 3.15058 3.16257 3.58686 3.96472 4.34723 4.45254 4.50717 4.61459 4.70591 4.80139 4.98448 5.04979 5.24768 5.35385 5.47005 5.54866 5.56882 5.69886 5.71014 5.76482 5.77201 5.78995 5.87159 5.91748 5.92408 5.99670 6.08748 6.34231 6.38460 6.53166 6.74553 6.80473 7.01156 7.21418 7.29905 7.42330 7.53738 7.70815 7.91465 8.02847 8.33533 8.88246 9.20911 9.63903 10.50816 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.003213 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.801712 B = 8711.860846 C = 9967.310349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.049 3.951 3 Si 0.922 3.078 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.364 4.364 8 H 0.103 0.897 9 N -0.406 5.406 10 C 0.463 3.537 11 O -0.577 6.577 12 C 0.073 3.927 13 O -0.336 6.336 14 C 0.457 3.543 15 O -0.512 6.512 16 C -0.104 4.104 17 C -0.100 4.100 18 C -0.137 4.137 19 C -0.142 4.142 20 C -0.136 4.136 21 C 0.238 3.762 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.144 4.144 25 C -0.121 4.121 26 C -0.066 4.066 27 H 0.275 0.725 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.584 -8.738 -2.529 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.160 4.160 3 Si 0.748 3.252 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.490 4.490 8 H 0.121 0.879 9 N -0.124 5.124 10 C 0.252 3.748 11 O -0.460 6.460 12 C -0.004 4.004 13 O -0.251 6.251 14 C 0.300 3.700 15 O -0.401 6.401 16 C -0.142 4.142 17 C -0.119 4.119 18 C -0.175 4.175 19 C -0.180 4.180 20 C -0.173 4.173 21 C 0.147 3.853 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.162 4.162 25 C -0.140 4.140 26 C -0.085 4.085 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.317 -8.775 -2.406 11.676 hybrid contribution 0.400 1.475 -0.137 1.535 sum 7.717 -7.299 -2.543 10.922 Atomic orbital electron populations 1.69926 1.05800 1.28296 1.43704 1.25270 0.95474 0.99793 0.95421 0.86064 0.79192 0.80705 0.79244 1.19607 1.20660 1.19616 1.19594 0.95378 0.83326 1.50666 0.87905 1.41184 1.16366 1.04991 1.49883 1.19529 0.87117 0.83596 0.84546 1.90615 1.65502 1.33207 1.56725 1.22602 0.96839 0.78927 1.02005 1.86508 1.40131 1.31174 1.67296 1.23751 0.78543 0.92815 0.74898 1.90646 1.56024 1.45692 1.47742 1.21418 0.98584 0.90978 1.03171 1.22447 0.92092 0.98048 0.99285 1.23032 0.96327 0.99891 0.98210 1.22837 0.96300 0.98843 0.99978 1.22966 0.96329 0.96250 1.01763 1.17055 0.84821 0.93430 0.89952 1.20980 0.97186 1.01821 0.94100 1.20662 0.92499 1.02363 0.98621 1.20752 0.97190 1.03754 0.94521 1.20688 0.96613 1.02141 0.94560 1.20806 0.91616 0.97644 0.98462 0.91420 0.89217 0.88693 0.87578 0.87698 0.88071 0.91078 0.90127 0.91488 0.90225 0.89842 0.91298 0.87430 0.87524 0.87688 0.87491 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.36 10.34 55.49 0.57 -20.79 16 2 C 0.05 1.20 5.24 -17.49 -0.09 1.11 16 3 Si 0.92 19.17 29.59 -169.99 -5.03 14.14 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.36 -8.99 9.19 -14.93 -0.14 -9.12 16 8 H 0.10 2.38 6.46 -52.49 -0.34 2.04 16 9 N -0.41 -10.19 2.66 -58.98 -0.16 -10.35 16 10 C 0.46 11.32 7.66 -10.99 -0.08 11.23 16 11 O -0.58 -15.49 16.48 -14.11 -0.23 -15.72 16 12 C 0.07 1.51 4.49 36.00 0.16 1.67 16 13 O -0.34 -6.51 9.75 -45.91 -0.45 -6.96 16 14 C 0.46 7.42 7.96 36.00 0.29 7.70 16 15 O -0.51 -9.35 15.54 -18.75 -0.29 -9.64 16 16 C -0.10 -1.18 5.63 -27.89 -0.16 -1.33 16 17 C -0.10 -1.03 3.11 -89.81 -0.28 -1.31 16 18 C -0.14 -1.35 7.65 -25.78 -0.20 -1.55 16 19 C -0.14 -1.14 8.09 -25.77 -0.21 -1.34 16 20 C -0.14 -1.07 7.64 -25.92 -0.20 -1.27 16 21 C 0.24 5.88 2.29 -83.69 -0.19 5.69 16 22 C -0.12 -2.79 9.95 -39.37 -0.39 -3.19 16 23 C -0.12 -2.46 10.04 -39.61 -0.40 -2.86 16 24 C -0.14 -2.76 10.04 -39.53 -0.40 -3.16 16 25 C -0.12 -2.47 10.04 -39.61 -0.40 -2.87 16 26 C -0.07 -1.55 8.66 -39.37 -0.34 -1.89 16 27 H 0.27 6.71 8.32 -40.82 -0.34 6.37 16 28 H 0.09 1.77 7.52 -51.93 -0.39 1.38 16 29 H 0.10 1.92 8.13 -51.93 -0.42 1.50 16 30 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.03 7.88 -51.93 -0.41 0.62 16 32 H 0.10 1.16 7.73 -51.93 -0.40 0.76 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.75 7.92 -51.93 -0.41 0.33 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.59 8.10 -51.93 -0.42 0.16 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 40 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.11 2.52 8.06 -52.49 -0.42 2.09 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -30.25 366.41 -9.24 -39.50 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.16 Total: 6.77 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -3.02 Total: -2.48 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 0.42 Total: -31.13 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.97 Total: -32.31 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.25 -9.24 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745571256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.341 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds