Wall clock time and date at job start Tue Mar 31 2020 11:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86801 * 120.00225 * 2 1 4 4 H 1.48497 * 109.47410 * 240.00473 * 3 2 1 5 5 H 1.48500 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47021 * 120.00105 * 3 2 1 7 7 C 1.38892 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00343 * 163.61977 * 7 2 1 9 9 N 1.37140 * 119.99755 * 343.62252 * 7 2 1 10 10 C 1.34774 * 119.99781 * 164.73827 * 9 7 2 11 11 O 1.21283 * 119.99897 * 174.95265 * 10 9 7 12 12 C 1.50696 * 120.00334 * 354.95618 * 10 9 7 13 13 O 1.45195 * 109.47413 * 179.97438 * 12 10 9 14 14 C 1.34233 * 117.00313 * 180.02562 * 13 12 10 15 15 O 1.20829 * 119.99760 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00318 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47399 * 179.97438 * 16 14 13 18 18 C 1.53776 * 113.61607 * 85.85845 * 17 16 14 19 19 C 1.54057 * 86.98721 * 140.02064 * 18 17 16 20 20 C 1.53777 * 113.61723 * 183.47053 * 17 16 14 21 21 C 1.39794 * 120.00204 * 344.74361 * 9 7 2 22 22 C 1.38958 * 120.07451 * 281.20945 * 21 9 7 23 23 C 1.38081 * 119.91949 * 179.79001 * 22 21 9 24 24 C 1.38306 * 120.07918 * 0.46358 * 23 22 21 25 25 C 1.38308 * 120.15632 * 359.78970 * 24 23 22 26 26 C 1.38093 * 120.07726 * 359.97381 * 25 24 23 27 27 H 0.97002 * 120.00188 * 5.01543 * 1 2 3 28 28 H 1.09004 * 109.46828 * 59.99914 * 12 10 9 29 29 H 1.09005 * 109.47261 * 300.00007 * 12 10 9 30 30 H 1.09000 * 109.46995 * 59.99182 * 16 14 13 31 31 H 1.09003 * 109.46926 * 299.99802 * 16 14 13 32 32 H 1.09002 * 112.84539 * 314.66689 * 17 16 14 33 33 H 1.08996 * 113.61688 * 254.61600 * 18 17 16 34 34 H 1.09003 * 113.61351 * 25.52109 * 18 17 16 35 35 H 1.08997 * 113.62129 * 220.02166 * 19 18 17 36 36 H 1.08997 * 113.60972 * 89.11605 * 19 18 17 37 37 H 1.09005 * 113.61529 * 334.48046 * 20 17 16 38 38 H 1.09000 * 113.61740 * 105.29754 * 20 17 16 39 39 H 1.08008 * 120.03932 * 359.97438 * 22 21 9 40 40 H 1.07998 * 119.95994 * 180.24889 * 23 22 21 41 41 H 1.07998 * 119.92673 * 179.76835 * 24 23 22 42 42 H 1.07997 * 119.96616 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.03954 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0087 -1.2028 -0.0005 8 1 3.0558 -1.2217 -0.2643 9 7 1.3647 -2.3665 0.3338 10 6 1.9286 -3.5559 0.0443 11 8 1.4047 -4.5830 0.4205 12 6 3.2101 -3.6096 -0.7467 13 8 3.6113 -4.9936 -0.9249 14 6 4.7420 -5.2166 -1.6132 15 8 5.3752 -4.2861 -2.0526 16 6 5.2209 -6.6275 -1.8388 17 6 6.5209 -6.6020 -2.6451 18 6 7.7798 -6.4301 -1.7789 19 6 8.4585 -7.4572 -2.7051 20 6 7.0511 -8.0003 -3.0035 21 6 0.1232 -2.3191 0.9748 22 6 0.0530 -2.0603 2.3383 23 6 -1.1752 -2.0099 2.9673 24 6 -2.3339 -2.2261 2.2439 25 6 -2.2674 -2.4893 0.8877 26 6 -1.0429 -2.5363 0.2511 27 1 -0.4850 0.8368 -0.0734 28 1 3.9913 -3.0715 -0.2097 29 1 3.0550 -3.1475 -1.7216 30 1 4.4631 -7.1848 -2.3895 31 1 5.3988 -7.1090 -0.8772 32 1 6.4789 -5.9201 -3.4944 33 1 8.2164 -5.4330 -1.8360 34 1 7.6561 -6.7811 -0.7543 35 1 9.0973 -8.1657 -2.1778 36 1 8.9462 -7.0090 -3.5708 37 1 6.7285 -8.7798 -2.3132 38 1 6.8984 -8.2707 -4.0484 39 1 0.9578 -1.8957 2.9047 40 1 -1.2308 -1.8047 4.0262 41 1 -3.2930 -2.1898 2.7392 42 1 -3.1742 -2.6573 0.3257 43 1 -0.9917 -2.7423 -0.8078 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745571256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:08 Heat of formation + Delta-G solvation = -78.359932 kcal Electronic energy + Delta-G solvation = -26059.676418 eV Core-core repulsion = 22263.525662 eV Total energy + Delta-G solvation = -3796.150756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.79163 -41.08353 -39.60537 -38.94436 -37.38145 -36.63122 -33.67612 -32.11778 -31.58411 -31.14098 -28.99314 -26.92178 -26.45459 -25.01909 -23.39156 -23.22209 -21.78598 -21.25304 -20.28335 -19.70171 -18.82344 -17.97855 -17.79856 -17.25338 -17.23623 -16.62008 -16.33601 -16.26922 -15.90700 -15.48415 -15.29671 -15.08882 -14.56698 -14.29987 -14.10780 -13.83129 -13.56464 -13.39696 -13.27772 -13.24596 -12.88268 -12.81462 -12.71916 -12.40957 -12.26563 -12.09624 -12.03230 -11.82590 -11.69352 -11.45629 -11.30037 -11.17351 -11.07715 -10.59949 -10.08531 -9.58687 -9.36543 -8.17976 -6.06193 0.73875 0.79641 1.15712 1.33994 1.41071 1.47209 1.53858 1.74986 2.24055 2.82133 3.01196 3.21154 3.56160 3.70624 3.78047 3.88186 3.99237 4.02464 4.10830 4.20193 4.24216 4.28188 4.38837 4.45191 4.48602 4.63883 4.74067 4.89039 4.89260 4.91804 4.99325 5.05655 5.12682 5.17279 5.29686 5.34458 5.35240 5.44305 5.60980 5.63738 5.75713 5.78820 5.97911 6.19925 6.49510 6.68751 6.97820 7.33483 7.76067 8.63573 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.003213 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.801712 B = 8711.860846 C = 9967.310349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.013 3.987 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.384 4.384 8 H 0.111 0.889 9 N -0.411 5.411 10 C 0.449 3.551 11 O -0.611 6.611 12 C 0.085 3.915 13 O -0.351 6.351 14 C 0.453 3.547 15 O -0.536 6.536 16 C -0.097 4.097 17 C -0.107 4.107 18 C -0.146 4.146 19 C -0.136 4.136 20 C -0.123 4.123 21 C 0.206 3.794 22 C -0.147 4.147 23 C -0.119 4.119 24 C -0.137 4.137 25 C -0.120 4.120 26 C -0.094 4.094 27 H 0.274 0.726 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.142 0.858 41 H 0.150 0.850 42 H 0.137 0.863 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.447 -9.116 -1.960 11.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.510 4.510 8 H 0.128 0.872 9 N -0.128 5.128 10 C 0.239 3.761 11 O -0.498 6.498 12 C 0.008 3.992 13 O -0.266 6.266 14 C 0.298 3.702 15 O -0.426 6.426 16 C -0.134 4.134 17 C -0.126 4.126 18 C -0.183 4.183 19 C -0.173 4.173 20 C -0.160 4.160 21 C 0.116 3.884 22 C -0.167 4.167 23 C -0.137 4.137 24 C -0.155 4.155 25 C -0.138 4.138 26 C -0.113 4.113 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.155 0.845 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.188 -9.154 -1.846 11.784 hybrid contribution 0.384 1.591 -0.299 1.664 sum 7.572 -7.563 -2.145 10.914 Atomic orbital electron populations 1.70080 1.06943 1.28752 1.43732 1.26058 0.96227 1.02418 0.94706 0.85096 0.77961 0.76717 0.79314 1.18962 1.20461 1.19365 1.19950 0.95970 0.83715 1.51329 0.87172 1.41417 1.16664 1.05263 1.49432 1.20091 0.88123 0.83147 0.84695 1.90558 1.66776 1.34115 1.58329 1.22310 0.95339 0.80273 1.01285 1.86539 1.41787 1.30015 1.68285 1.24833 0.77167 0.94635 0.73530 1.90630 1.56391 1.46968 1.48597 1.21648 0.99407 0.87616 1.04691 1.22486 0.91626 0.99739 0.98713 1.23107 0.96553 0.99619 0.99021 1.22822 0.96660 0.98319 0.99545 1.22948 0.95464 0.94836 1.02758 1.17409 0.84983 0.95035 0.90958 1.21137 0.98482 1.03380 0.93713 1.21104 0.91574 1.00619 1.00421 1.21246 0.98799 1.01536 0.93907 1.21088 0.96419 1.00683 0.95645 1.20841 0.92932 0.99766 0.97791 0.91585 0.88613 0.88742 0.85586 0.85671 0.89832 0.92990 0.89445 0.90071 0.90143 0.88288 0.90349 0.88158 0.83989 0.83225 0.84480 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.09 10.34 21.65 0.22 -43.86 16 2 C 0.01 0.62 5.24 84.91 0.44 1.07 16 3 Si 0.99 39.28 29.59 68.60 2.03 41.31 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.38 -19.47 9.19 84.02 0.77 -18.70 16 8 H 0.11 5.23 6.46 -2.91 -0.02 5.21 16 9 N -0.41 -21.42 2.66 -458.90 -1.22 -22.64 16 10 C 0.45 22.96 7.66 87.66 0.67 23.63 16 11 O -0.61 -34.26 16.48 15.76 0.26 -34.00 16 12 C 0.08 3.65 4.49 71.23 0.32 3.97 16 13 O -0.35 -13.92 9.75 -45.09 -0.44 -14.36 16 14 C 0.45 14.86 7.96 71.23 0.57 15.43 16 15 O -0.54 -20.01 15.54 21.95 0.34 -19.67 16 16 C -0.10 -2.07 5.63 29.85 0.17 -1.90 16 17 C -0.11 -2.09 3.11 -10.27 -0.03 -2.12 16 18 C -0.15 -2.74 7.65 31.21 0.24 -2.50 16 19 C -0.14 -1.92 8.09 31.22 0.25 -1.67 16 20 C -0.12 -1.64 7.64 31.12 0.24 -1.40 16 21 C 0.21 10.48 2.29 38.22 0.09 10.57 16 22 C -0.15 -6.87 9.95 22.40 0.22 -6.64 16 23 C -0.12 -4.54 10.04 22.25 0.22 -4.32 16 24 C -0.14 -4.86 10.04 22.30 0.22 -4.64 16 25 C -0.12 -4.74 10.04 22.25 0.22 -4.52 16 26 C -0.09 -4.53 8.66 22.41 0.19 -4.33 16 27 H 0.27 13.41 8.32 -92.71 -0.77 12.64 16 28 H 0.10 3.94 7.52 -2.38 -0.02 3.92 16 29 H 0.09 4.01 8.13 -2.38 -0.02 3.99 16 30 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.13 2.22 7.88 -2.39 -0.02 2.20 16 32 H 0.08 1.93 7.73 -2.39 -0.02 1.91 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.51 7.92 -2.39 -0.02 1.49 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.05 8.10 -2.38 -0.02 1.03 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 40 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 41 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 42 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 43 H 0.09 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -67.67 366.41 7.01 -60.65 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 1.00 Total: 30.65 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 4.82 Total: 1.92 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -1.00 Total: -66.50 kcal Atomic # 8 Polarization: -68.19 SS G_CDS: 0.16 Total: -68.03 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -67.67 7.01 -60.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745571256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.706 kcal (2) G-P(sol) polarization free energy of solvation -67.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds