Wall clock time and date at job start Tue Mar 31 2020 11:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86801 * 119.99800 * 2 1 4 4 H 1.48499 * 109.46831 * 269.99917 * 3 2 1 5 5 H 1.48498 * 109.47249 * 29.99947 * 3 2 1 6 6 H 1.48497 * 109.46729 * 150.00214 * 3 2 1 7 7 C 1.38654 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99824 * 0.02562 * 7 2 1 9 9 O 1.34825 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.35753 * 116.99962 * 185.03150 * 9 7 2 11 11 C 1.38955 * 120.03210 * 354.68579 * 10 9 7 12 12 C 1.38127 * 120.06837 * 180.02562 * 11 10 9 13 13 C 1.38203 * 120.14045 * 359.72538 * 12 11 10 14 14 C 1.38923 * 120.06208 * 0.55173 * 13 12 11 15 15 N 1.39925 * 120.03372 * 179.72355 * 14 13 12 16 16 C 1.34777 * 120.00035 * 214.45964 * 15 14 13 17 17 O 1.21284 * 120.00069 * 5.41353 * 16 15 14 18 18 C 1.50702 * 119.99992 * 185.14185 * 16 15 14 19 19 H 1.09002 * 115.55425 * 51.15091 * 18 16 15 20 20 C 1.53059 * 117.50623 * 196.91246 * 18 16 15 21 21 C 1.52702 * 59.93051 * 107.46353 * 20 18 16 22 22 C 1.53252 * 117.87830 * 107.78075 * 21 20 18 23 23 C 1.53334 * 108.48223 * 196.26155 * 22 21 20 24 24 O 1.42869 * 109.32043 * 306.01801 * 23 22 21 25 25 C 1.42877 * 114.51539 * 64.36693 * 24 23 22 26 26 C 1.53246 * 117.88524 * 252.21353 * 21 20 18 27 27 C 1.38736 * 120.03287 * 174.70782 * 10 9 7 28 28 H 0.97000 * 120.00175 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.96471 * 0.04487 * 11 10 9 30 30 H 1.07997 * 119.92486 * 180.02562 * 12 11 10 31 31 H 1.07995 * 119.96906 * 180.27313 * 13 12 11 32 32 H 0.96998 * 119.99841 * 34.45529 * 15 14 13 33 33 H 1.08997 * 117.50221 * 214.93237 * 20 18 16 34 34 H 1.09003 * 117.50677 * 359.97438 * 20 18 16 35 35 H 1.08999 * 109.64038 * 315.96203 * 22 21 20 36 36 H 1.08998 * 109.63801 * 76.56773 * 22 21 20 37 37 H 1.09003 * 109.49800 * 186.06046 * 23 22 21 38 38 H 1.08999 * 109.51979 * 65.98658 * 23 22 21 39 39 H 1.08996 * 109.49499 * 175.67817 * 25 24 23 40 40 H 1.08996 * 109.52157 * 55.60300 * 25 24 23 41 41 H 1.09000 * 109.63715 * 283.43851 * 26 21 20 42 42 H 1.09007 * 109.63174 * 44.04143 * 26 21 20 43 43 H 1.07996 * 120.07013 * 359.95428 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4057 -0.1055 11 6 3.2219 -3.5744 -0.0955 12 6 3.8483 -4.8009 -0.2023 13 6 5.2231 -4.8696 -0.3251 14 6 5.9804 -3.7050 -0.3299 15 7 7.3729 -3.7756 -0.4485 16 6 8.1501 -2.8821 0.1951 17 8 7.6502 -2.0790 0.9540 18 6 9.6412 -2.8851 -0.0237 19 1 9.9637 -2.8670 -1.0647 20 6 10.5071 -2.1444 0.9983 21 6 10.4978 -3.6710 0.9667 22 6 11.7425 -4.3842 0.4274 23 6 11.3703 -5.8370 0.1082 24 8 10.7842 -6.4396 1.2634 25 6 9.5442 -5.8583 1.6707 26 6 9.7825 -4.4072 2.1046 27 6 5.3542 -2.4715 -0.2230 28 1 -0.4850 0.8400 0.0004 29 1 2.1470 -3.5238 -0.0044 30 1 3.2619 -5.7078 -0.1946 31 1 5.7096 -5.8298 -0.4128 32 1 7.7787 -4.4675 -0.9938 33 1 11.3994 -1.6387 0.6296 34 1 9.9981 -1.6547 1.8285 35 1 12.0859 -3.8864 -0.4794 36 1 12.5306 -4.3650 1.1801 37 1 12.2669 -6.3886 -0.1746 38 1 10.6559 -5.8575 -0.7148 39 1 9.1339 -6.4251 2.5064 40 1 8.8415 -5.8783 0.8377 41 1 10.4041 -4.3899 2.9998 42 1 8.8268 -3.9245 2.3094 43 1 5.9404 -1.5645 -0.2314 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749348068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:51 Heat of formation + Delta-G solvation = -55.429228 kcal Electronic energy + Delta-G solvation = -26402.317617 eV Core-core repulsion = 22607.161211 eV Total energy + Delta-G solvation = -3795.156406 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96415 -39.57699 -38.67402 -37.09136 -36.24772 -34.18111 -32.37542 -31.61158 -30.54945 -29.71695 -28.74797 -25.36904 -24.83377 -24.08691 -23.17695 -22.17191 -21.19633 -20.37205 -19.18104 -18.09518 -17.69162 -17.07054 -16.56331 -16.36557 -15.63138 -15.33289 -15.24201 -15.12672 -14.92609 -14.24851 -14.06743 -13.80867 -13.71795 -13.53186 -13.35837 -12.90242 -12.72670 -12.41673 -12.30172 -12.25897 -11.73873 -11.69347 -11.41432 -11.24848 -11.08398 -10.98202 -10.85271 -10.72247 -10.37435 -10.19792 -9.91166 -9.77562 -9.57022 -9.30976 -8.86607 -7.83581 -7.33943 -6.41131 -4.07765 1.83722 2.20211 2.61267 3.02409 3.24496 3.27790 3.41748 3.45530 3.54477 4.16293 4.26323 4.31173 4.41764 4.44967 4.50074 4.64560 4.70449 4.84427 4.98977 5.08738 5.10985 5.12634 5.23730 5.32405 5.34984 5.47722 5.51571 5.53673 5.68292 5.70303 5.75050 5.81011 5.90581 6.04225 6.08925 6.22841 6.47643 6.76339 6.88228 6.88825 7.08672 7.29812 7.55287 7.56428 7.80003 8.02783 8.23416 8.94324 9.57088 10.66258 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.003153 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.340741 B = 8878.941851 C = 9799.329202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.389 4.389 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.175 3.825 11 C -0.231 4.231 12 C -0.059 4.059 13 C -0.227 4.227 14 C 0.176 3.824 15 N -0.666 5.666 16 C 0.539 3.461 17 O -0.508 6.508 18 C -0.183 4.183 19 H 0.128 0.872 20 C -0.133 4.133 21 C -0.104 4.104 22 C -0.117 4.117 23 C 0.062 3.938 24 O -0.382 6.382 25 C 0.064 3.936 26 C -0.126 4.126 27 C -0.188 4.188 28 H 0.280 0.720 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.405 0.595 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.075 -11.221 -1.197 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.465 4.465 8 H 0.125 0.875 9 O -0.118 6.118 10 C 0.121 3.879 11 C -0.251 4.251 12 C -0.078 4.078 13 C -0.248 4.248 14 C 0.083 3.917 15 N -0.311 5.311 16 C 0.325 3.675 17 O -0.382 6.382 18 C -0.205 4.205 19 H 0.146 0.854 20 C -0.171 4.171 21 C -0.104 4.104 22 C -0.155 4.155 23 C -0.015 4.015 24 O -0.301 6.301 25 C -0.012 4.012 26 C -0.163 4.163 27 C -0.209 4.209 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.240 0.760 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 22.712 -10.383 -0.529 24.979 hybrid contribution 0.114 0.649 -0.574 0.874 sum 22.827 -9.734 -1.104 24.840 Atomic orbital electron populations 1.69644 1.05548 1.28520 1.47959 1.24452 0.95010 0.98823 0.95581 0.86213 0.80531 0.81431 0.79018 1.19864 1.20712 1.18180 1.20785 0.76814 0.96684 1.52183 0.87495 1.83586 1.22636 1.25587 1.79974 1.18838 0.91030 0.85619 0.92369 1.21302 1.01300 0.91806 1.10676 1.20569 0.93418 0.96876 0.96889 1.20327 0.94182 0.95521 1.14784 1.17136 0.81042 0.93385 1.00153 1.43372 1.04932 1.32884 1.49893 1.19685 0.87424 0.80649 0.79697 1.90794 1.74838 1.37768 1.34826 1.22438 0.90419 1.09087 0.98509 0.85412 1.23056 1.00350 0.93156 1.00512 1.21497 0.97199 0.93957 0.97773 1.21864 0.95793 0.96136 1.01678 1.22602 0.98244 0.92725 0.87937 1.87881 1.37537 1.58119 1.46554 1.22601 0.85649 0.93007 0.99962 1.21908 1.01284 0.96024 0.97095 1.19985 0.92081 0.96952 1.11924 0.91032 0.84782 0.86695 0.87203 0.75993 0.87693 0.87187 0.90413 0.90040 0.88715 0.93053 0.88518 0.92990 0.90021 0.90006 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 13.96 55.48 0.77 -24.87 16 2 C 0.06 1.85 5.49 -17.51 -0.10 1.75 16 3 Si 0.90 22.30 28.62 -169.99 -4.86 17.43 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.39 -11.16 9.95 30.89 0.31 -10.85 16 8 H 0.11 3.09 5.43 -52.49 -0.29 2.81 16 9 O -0.21 -5.85 8.58 0.05 0.00 -5.85 16 10 C 0.17 4.19 6.64 -39.13 -0.26 3.93 16 11 C -0.23 -5.01 9.17 -39.36 -0.36 -5.37 16 12 C -0.06 -1.04 10.03 -39.64 -0.40 -1.43 16 13 C -0.23 -3.66 9.96 -39.34 -0.39 -4.06 16 14 C 0.18 3.07 6.25 -83.72 -0.52 2.55 16 15 N -0.67 -8.88 5.34 -9.88 -0.05 -8.93 16 16 C 0.54 7.63 5.70 -10.98 -0.06 7.57 16 17 O -0.51 -9.63 14.00 5.55 0.08 -9.55 16 18 C -0.18 -1.80 5.89 -91.88 -0.54 -2.34 16 19 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.13 -1.25 9.51 -26.85 -0.26 -1.50 16 21 C -0.10 -0.89 2.03 -154.55 -0.31 -1.20 16 22 C -0.12 -0.75 5.92 -26.43 -0.16 -0.91 16 23 C 0.06 0.42 6.84 37.33 0.26 0.68 16 24 O -0.38 -3.64 10.69 -35.23 -0.38 -4.01 16 25 C 0.06 0.59 6.84 37.33 0.26 0.85 16 26 C -0.13 -1.23 5.58 -26.44 -0.15 -1.37 16 27 C -0.19 -4.06 8.59 -39.21 -0.34 -4.40 16 28 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.13 3.03 5.63 -52.49 -0.30 2.73 16 30 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.41 3.88 8.82 -40.82 -0.36 3.52 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.11 1.24 7.77 -51.93 -0.40 0.84 16 35 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.00 6.70 -51.93 -0.35 0.65 16 43 H 0.13 2.87 6.53 -52.49 -0.34 2.53 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -33.00 355.43 -7.93 -40.92 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.82 Total: 5.62 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -3.02 Total: -16.12 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.72 Total: -33.80 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.30 Total: -19.41 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.86 Total: 17.43 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.00 -7.93 -40.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749348068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.508 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds