Wall clock time and date at job start Tue Mar 31 2020 11:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86801 * 119.99800 * 2 1 4 4 H 1.48499 * 109.46831 * 269.99917 * 3 2 1 5 5 H 1.48498 * 109.47249 * 29.99947 * 3 2 1 6 6 H 1.48497 * 109.46729 * 150.00214 * 3 2 1 7 7 C 1.38654 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99824 * 0.02562 * 7 2 1 9 9 O 1.34825 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.35753 * 116.99962 * 185.03150 * 9 7 2 11 11 C 1.38955 * 120.03210 * 354.68579 * 10 9 7 12 12 C 1.38127 * 120.06837 * 180.02562 * 11 10 9 13 13 C 1.38203 * 120.14045 * 359.72538 * 12 11 10 14 14 C 1.38923 * 120.06208 * 0.55173 * 13 12 11 15 15 N 1.39925 * 120.03372 * 179.72355 * 14 13 12 16 16 C 1.34777 * 120.00035 * 214.45964 * 15 14 13 17 17 O 1.21284 * 120.00069 * 5.41353 * 16 15 14 18 18 C 1.50702 * 119.99992 * 185.14185 * 16 15 14 19 19 H 1.09002 * 115.55425 * 51.15091 * 18 16 15 20 20 C 1.53059 * 117.50623 * 196.91246 * 18 16 15 21 21 C 1.52702 * 59.93051 * 107.46353 * 20 18 16 22 22 C 1.53252 * 117.87830 * 107.78075 * 21 20 18 23 23 C 1.53334 * 108.48223 * 196.26155 * 22 21 20 24 24 O 1.42869 * 109.32043 * 306.01801 * 23 22 21 25 25 C 1.42877 * 114.51539 * 64.36693 * 24 23 22 26 26 C 1.53246 * 117.88524 * 252.21353 * 21 20 18 27 27 C 1.38736 * 120.03287 * 174.70782 * 10 9 7 28 28 H 0.97000 * 120.00175 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.96471 * 0.04487 * 11 10 9 30 30 H 1.07997 * 119.92486 * 180.02562 * 12 11 10 31 31 H 1.07995 * 119.96906 * 180.27313 * 13 12 11 32 32 H 0.96998 * 119.99841 * 34.45529 * 15 14 13 33 33 H 1.08997 * 117.50221 * 214.93237 * 20 18 16 34 34 H 1.09003 * 117.50677 * 359.97438 * 20 18 16 35 35 H 1.08999 * 109.64038 * 315.96203 * 22 21 20 36 36 H 1.08998 * 109.63801 * 76.56773 * 22 21 20 37 37 H 1.09003 * 109.49800 * 186.06046 * 23 22 21 38 38 H 1.08999 * 109.51979 * 65.98658 * 23 22 21 39 39 H 1.08996 * 109.49499 * 175.67817 * 25 24 23 40 40 H 1.08996 * 109.52157 * 55.60300 * 25 24 23 41 41 H 1.09000 * 109.63715 * 283.43851 * 26 21 20 42 42 H 1.09007 * 109.63174 * 44.04143 * 26 21 20 43 43 H 1.07996 * 120.07013 * 359.95428 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4057 -0.1055 11 6 3.2219 -3.5744 -0.0955 12 6 3.8483 -4.8009 -0.2023 13 6 5.2231 -4.8696 -0.3251 14 6 5.9804 -3.7050 -0.3299 15 7 7.3729 -3.7756 -0.4485 16 6 8.1501 -2.8821 0.1951 17 8 7.6502 -2.0790 0.9540 18 6 9.6412 -2.8851 -0.0237 19 1 9.9637 -2.8670 -1.0647 20 6 10.5071 -2.1444 0.9983 21 6 10.4978 -3.6710 0.9667 22 6 11.7425 -4.3842 0.4274 23 6 11.3703 -5.8370 0.1082 24 8 10.7842 -6.4396 1.2634 25 6 9.5442 -5.8583 1.6707 26 6 9.7825 -4.4072 2.1046 27 6 5.3542 -2.4715 -0.2230 28 1 -0.4850 0.8400 0.0004 29 1 2.1470 -3.5238 -0.0044 30 1 3.2619 -5.7078 -0.1946 31 1 5.7096 -5.8298 -0.4128 32 1 7.7787 -4.4675 -0.9938 33 1 11.3994 -1.6387 0.6296 34 1 9.9981 -1.6547 1.8285 35 1 12.0859 -3.8864 -0.4794 36 1 12.5306 -4.3650 1.1801 37 1 12.2669 -6.3886 -0.1746 38 1 10.6559 -5.8575 -0.7148 39 1 9.1339 -6.4251 2.5064 40 1 8.8415 -5.8783 0.8377 41 1 10.4041 -4.3899 2.9998 42 1 8.8268 -3.9245 2.3094 43 1 5.9404 -1.5645 -0.2314 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749348068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:50 Heat of formation + Delta-G solvation = -77.689535 kcal Electronic energy + Delta-G solvation = -26403.282897 eV Core-core repulsion = 22607.161211 eV Total energy + Delta-G solvation = -3796.121686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.00908 -40.90020 -39.97086 -38.45206 -37.28328 -35.58466 -34.46960 -32.21277 -31.49363 -31.14052 -30.22981 -27.30252 -25.99033 -24.71970 -23.98246 -23.48675 -22.76448 -21.46675 -20.05411 -19.90842 -19.37125 -18.19933 -17.33319 -17.16168 -16.98937 -16.90663 -16.43641 -16.21574 -15.86694 -15.74468 -15.70515 -15.39516 -14.86693 -14.40916 -14.33124 -14.29110 -14.19523 -14.04212 -13.44973 -13.33758 -13.03100 -13.00131 -12.77774 -12.53392 -12.30670 -12.12170 -12.08337 -11.74850 -11.52653 -11.40868 -11.30092 -11.07511 -10.90865 -10.81369 -10.24062 -9.43683 -8.96660 -8.53954 -6.26115 0.32884 0.60669 1.25524 1.28552 1.45211 1.47292 1.91430 2.24280 2.59775 2.74215 2.96058 2.97251 3.13741 3.45083 3.60620 3.69321 3.80370 3.96987 4.04367 4.06307 4.24027 4.31237 4.35118 4.45639 4.52009 4.60067 4.61219 4.66204 4.75496 4.78827 4.81456 4.89518 4.92107 5.00673 5.11741 5.18798 5.25278 5.31195 5.34420 5.38814 5.64627 5.74578 5.87569 6.17604 6.29919 6.40527 6.80860 7.11767 7.56374 8.57549 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.003153 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.340741 B = 8878.941851 C = 9799.329202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.262 1.262 6 H -0.275 1.275 7 C -0.399 4.399 8 H 0.088 0.912 9 O -0.249 6.249 10 C 0.136 3.864 11 C -0.248 4.248 12 C -0.050 4.050 13 C -0.195 4.195 14 C 0.185 3.815 15 N -0.650 5.650 16 C 0.536 3.464 17 O -0.563 6.563 18 C -0.182 4.182 19 H 0.163 0.837 20 C -0.141 4.141 21 C -0.088 4.088 22 C -0.110 4.110 23 C 0.053 3.947 24 O -0.398 6.398 25 C 0.068 3.932 26 C -0.128 4.128 27 C -0.204 4.204 28 H 0.286 0.714 29 H 0.114 0.886 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.429 0.571 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.734 -13.755 -2.625 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.200 1.200 7 C -0.475 4.475 8 H 0.106 0.894 9 O -0.157 6.157 10 C 0.086 3.914 11 C -0.268 4.268 12 C -0.069 4.069 13 C -0.215 4.215 14 C 0.091 3.909 15 N -0.297 5.297 16 C 0.325 3.675 17 O -0.440 6.440 18 C -0.203 4.203 19 H 0.180 0.820 20 C -0.179 4.179 21 C -0.088 4.088 22 C -0.148 4.148 23 C -0.023 4.023 24 O -0.317 6.317 25 C -0.009 4.009 26 C -0.166 4.166 27 C -0.226 4.226 28 H 0.095 0.905 29 H 0.132 0.868 30 H 0.174 0.826 31 H 0.182 0.818 32 H 0.268 0.732 33 H 0.151 0.849 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.131 0.869 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 26.425 -12.981 -1.991 29.509 hybrid contribution -0.780 1.126 -0.110 1.374 sum 25.645 -11.855 -2.101 28.330 Atomic orbital electron populations 1.69708 1.06567 1.29567 1.50096 1.25171 0.95834 1.01747 0.95621 0.85336 0.78523 0.78189 0.79377 1.18779 1.18610 1.20032 1.20768 0.77824 0.96380 1.52541 0.89419 1.83533 1.21614 1.27588 1.82918 1.19348 0.92183 0.85543 0.94316 1.21352 1.00493 0.93007 1.11931 1.21032 0.94592 0.96487 0.94762 1.20912 0.93455 0.97021 1.10101 1.17276 0.83218 0.92343 0.98076 1.43298 1.03066 1.33470 1.49862 1.20521 0.89294 0.79322 0.78322 1.90789 1.76191 1.39842 1.37186 1.22485 0.87013 1.10262 1.00522 0.81991 1.23130 1.00956 0.94073 0.99690 1.21554 0.97412 0.93399 0.96456 1.21899 0.94264 0.95834 1.02760 1.22869 0.99220 0.92891 0.87330 1.87872 1.37476 1.58581 1.47778 1.22553 0.85973 0.92180 1.00222 1.21880 0.99940 0.96777 0.97958 1.20036 0.91073 0.98239 1.13212 0.90470 0.86804 0.82610 0.81787 0.73156 0.84908 0.90091 0.87872 0.89792 0.86897 0.91825 0.88496 0.92500 0.90018 0.93048 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.92 13.96 21.61 0.30 -55.62 16 2 C 0.02 0.90 5.49 84.83 0.47 1.37 16 3 Si 0.96 47.99 28.62 68.60 1.96 49.95 16 4 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.28 -14.32 7.11 99.48 0.71 -13.62 16 7 C -0.40 -24.40 9.95 67.92 0.68 -23.72 16 8 H 0.09 5.49 5.43 -2.91 -0.02 5.48 16 9 O -0.25 -14.57 8.58 -22.73 -0.20 -14.77 16 10 C 0.14 6.84 6.64 22.56 0.15 6.99 16 11 C -0.25 -11.01 9.17 22.42 0.21 -10.80 16 12 C -0.05 -1.64 10.03 22.23 0.22 -1.42 16 13 C -0.19 -5.44 9.96 22.43 0.22 -5.21 16 14 C 0.19 6.10 6.25 38.14 0.24 6.34 16 15 N -0.65 -15.48 5.34 -303.56 -1.62 -17.10 16 16 C 0.54 14.49 5.70 87.66 0.50 14.99 16 17 O -0.56 -21.89 14.00 -3.04 -0.04 -21.93 16 18 C -0.18 -3.06 5.89 -11.61 -0.07 -3.13 16 19 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 20 C -0.14 -2.38 9.51 30.51 0.29 -2.09 16 21 C -0.09 -1.25 2.03 -52.21 -0.11 -1.36 16 22 C -0.11 -0.93 5.92 30.79 0.18 -0.75 16 23 C 0.05 0.48 6.84 72.09 0.49 0.98 16 24 O -0.40 -6.24 10.69 -148.98 -1.59 -7.83 16 25 C 0.07 1.06 6.84 72.09 0.49 1.56 16 26 C -0.13 -2.32 5.58 30.79 0.17 -2.15 16 27 C -0.20 -9.03 8.59 22.51 0.19 -8.84 16 28 H 0.29 15.92 8.31 -92.71 -0.77 15.15 16 29 H 0.11 5.47 5.63 -2.91 -0.02 5.46 16 30 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 31 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.43 6.16 8.82 -92.71 -0.82 5.34 16 33 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.87 7.77 -2.39 -0.02 1.85 16 35 H 0.10 0.42 8.08 -2.39 -0.02 0.40 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.25 6.70 -2.38 -0.02 1.24 16 43 H 0.11 5.08 6.53 -2.91 -0.02 5.06 16 Total: -1.00 -79.36 355.43 3.37 -75.99 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.22 Total: 18.54 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 4.33 Total: -27.24 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -1.32 Total: -72.71 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.83 Total: -44.53 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.96 Total: 49.95 kcal Total: -79.36 3.37 -75.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749348068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.704 kcal (2) G-P(sol) polarization free energy of solvation -79.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds