Wall clock time and date at job start Tue Mar 31 2020 11:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 112.84777 * 2 1 4 4 O 1.20822 * 119.99790 * 131.19908 * 3 2 1 5 5 O 1.34224 * 120.00255 * 311.19035 * 3 2 1 6 6 C 1.45196 * 117.00214 * 180.02562 * 5 3 2 7 7 C 1.50706 * 109.47486 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99663 * 359.97438 * 7 6 5 9 9 N 1.34767 * 120.00241 * 180.02562 * 7 6 5 10 10 C 1.39247 * 120.00380 * 175.70925 * 9 7 6 11 11 C 1.39477 * 119.83314 * 215.01346 * 10 9 7 12 12 C 1.36372 * 120.16734 * 179.75815 * 11 10 9 13 13 C 1.40874 * 119.82673 * 0.50932 * 12 11 10 14 14 C 1.41150 * 120.16395 * 179.71771 * 13 12 11 15 15 H 1.07998 * 120.00392 * 214.79985 * 14 13 12 16 16 C 1.39908 * 119.99914 * 34.80797 * 14 13 12 17 17 N 1.30870 * 120.00071 * 355.55688 * 16 14 13 18 18 Si 1.86795 * 119.99957 * 175.55576 * 16 14 13 19 19 H 1.48504 * 109.47257 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47307 * 119.99888 * 18 16 14 21 21 H 1.48497 * 109.47376 * 240.00035 * 18 16 14 22 22 C 1.40873 * 119.67387 * 359.74368 * 13 12 11 23 23 C 1.36375 * 119.82401 * 359.97438 * 22 13 12 24 24 C 1.53776 * 113.61061 * 131.19798 * 2 1 3 25 25 C 1.53775 * 87.08221 * 89.11488 * 24 2 1 26 26 C 1.53775 * 87.17433 * 25.38822 * 25 24 2 27 27 H 1.09002 * 109.46960 * 288.80932 * 1 2 3 28 28 H 1.09002 * 109.46873 * 48.80697 * 1 2 3 29 29 H 1.08999 * 109.47171 * 168.80356 * 1 2 3 30 30 H 1.08997 * 109.47229 * 300.00151 * 6 5 3 31 31 H 1.08997 * 109.47246 * 60.00617 * 6 5 3 32 32 H 0.97000 * 120.00061 * 355.70084 * 9 7 6 33 33 H 1.07998 * 119.91832 * 0.02562 * 11 10 9 34 34 H 1.07994 * 120.09238 * 180.25090 * 12 11 10 35 35 H 0.96998 * 119.99863 * 180.02562 * 17 16 14 36 36 H 1.07991 * 120.08638 * 179.97438 * 22 13 12 37 37 H 1.08002 * 119.91325 * 179.97438 * 23 22 13 38 38 H 1.09003 * 113.61646 * 334.56154 * 24 2 1 39 39 H 1.09011 * 113.61057 * 203.66281 * 24 2 1 40 40 H 1.09009 * 113.61605 * 139.97551 * 25 24 2 41 41 H 1.09000 * 113.61558 * 270.79644 * 25 24 2 42 42 H 1.09002 * 113.61748 * 89.15846 * 26 25 24 43 43 H 1.09004 * 113.61518 * 220.06085 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9849 1.6778 0.7873 5 8 1.6704 2.3045 -0.8747 6 6 2.2799 3.6211 -0.8179 7 6 1.6579 4.5083 -1.8654 8 8 0.7870 4.0736 -2.5889 9 7 2.0702 5.7844 -1.9988 10 6 1.5602 6.5774 -3.0236 11 6 2.3792 7.5207 -3.6441 12 6 1.8882 8.2974 -4.6517 13 6 0.5472 8.1526 -5.0583 14 6 0.0300 8.9570 -6.0964 15 1 -0.9981 9.2860 -6.0636 16 6 0.8492 9.3279 -7.1682 17 7 2.1169 9.0029 -7.1659 18 14 0.1335 10.2870 -8.6025 19 1 -1.3124 10.5281 -8.3645 20 1 0.8377 11.5884 -8.7284 21 1 0.3063 9.5076 -9.8546 22 6 -0.2752 7.2014 -4.4232 23 6 0.2316 6.4278 -3.4209 24 6 2.1460 -0.9281 1.0602 25 6 2.0929 -2.0425 0.0020 26 6 2.1448 -0.9318 -1.0602 27 1 -0.3633 0.3313 0.9728 28 1 -0.3633 0.6768 -0.7733 29 1 -0.3633 -1.0081 -0.1995 30 1 2.1165 4.0548 0.1686 31 1 3.3503 3.5343 -1.0040 32 1 2.7221 6.1507 -1.3809 33 1 3.4059 7.6332 -3.3286 34 1 2.5245 9.0246 -5.1340 35 1 2.6849 9.2604 -7.9089 36 1 -1.3043 7.0851 -4.7293 37 1 -0.3978 5.6984 -2.9328 38 1 1.4944 -1.1068 1.9157 39 1 3.1591 -0.6486 1.3496 40 1 2.9717 -2.6875 0.0025 41 1 1.1573 -2.6019 0.0035 42 1 3.1575 -0.6533 -1.3517 43 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750532384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:19 Heat of formation + Delta-G solvation = -80.306859 kcal Electronic energy + Delta-G solvation = -25335.442281 eV Core-core repulsion = 21539.207099 eV Total energy + Delta-G solvation = -3796.235181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.21603 -39.77965 -38.72637 -37.29862 -36.34048 -34.48575 -33.00112 -30.49338 -29.71582 -29.43599 -28.11621 -26.10036 -25.45890 -24.64889 -22.09692 -21.54622 -20.83873 -19.83613 -19.05522 -17.71764 -17.54150 -17.31270 -16.76425 -16.44552 -16.08631 -15.45412 -15.19114 -14.80768 -14.35783 -14.01132 -13.89980 -13.45760 -13.26281 -12.85236 -12.76184 -12.66272 -12.58796 -12.47967 -12.15301 -11.74760 -11.66494 -11.58588 -11.41421 -11.20129 -11.03545 -10.92615 -10.85576 -10.75992 -10.70984 -10.36568 -10.04257 -9.52632 -9.49713 -9.18110 -8.93540 -7.58610 -6.91800 -6.64928 -4.37559 1.97007 2.23724 2.46616 2.94561 3.05730 3.08726 3.14004 3.26845 3.64568 3.96159 3.99248 4.10205 4.36436 4.38432 4.61981 4.66685 4.84279 4.97783 5.00839 5.08309 5.21797 5.34147 5.42159 5.46181 5.53577 5.61765 5.63054 5.67115 5.88082 6.03573 6.15009 6.20108 6.40066 6.68057 6.86155 7.02967 7.15342 7.25492 7.53547 7.60246 7.68472 7.81759 8.02966 8.17867 8.27807 8.56297 8.65106 8.89746 8.95713 10.26145 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031149 B = 0.002180 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.697656 B =12843.796902 C =13125.112532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.081 4.081 3 C 0.476 3.524 4 O -0.511 6.511 5 O -0.324 6.324 6 C 0.049 3.951 7 C 0.499 3.501 8 O -0.508 6.508 9 N -0.646 5.646 10 C 0.001 3.999 11 C -0.118 4.118 12 C -0.142 4.142 13 C 0.100 3.900 14 C -0.459 4.459 15 H 0.077 0.923 16 C 0.068 3.932 17 N -0.811 5.811 18 Si 0.916 3.084 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.205 4.205 23 C -0.084 4.084 24 C -0.117 4.117 25 C -0.139 4.139 26 C -0.121 4.121 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.398 0.602 33 H 0.092 0.908 34 H 0.133 0.867 35 H 0.278 0.722 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 -15.383 13.175 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.082 4.082 3 C 0.319 3.681 4 O -0.399 6.399 5 O -0.239 6.239 6 C -0.028 4.028 7 C 0.284 3.716 8 O -0.383 6.383 9 N -0.290 5.290 10 C -0.091 4.091 11 C -0.138 4.138 12 C -0.162 4.162 13 C 0.098 3.902 14 C -0.490 4.490 15 H 0.095 0.905 16 C -0.146 4.146 17 N -0.438 5.438 18 Si 0.741 3.259 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.225 4.225 23 C -0.104 4.104 24 C -0.155 4.155 25 C -0.176 4.176 26 C -0.158 4.158 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.231 0.769 33 H 0.110 0.890 34 H 0.151 0.849 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.892 -15.575 12.722 20.200 hybrid contribution 0.392 0.748 -0.347 0.913 sum 2.284 -14.828 12.375 19.448 Atomic orbital electron populations 1.21640 0.90091 1.03588 1.03452 1.22009 0.98110 0.86857 1.01273 1.23680 0.80066 0.87199 0.77195 1.90642 1.30292 1.80285 1.38645 1.86582 1.60842 1.20949 1.55516 1.22737 0.98465 0.81425 1.00198 1.19932 0.84354 0.82344 0.85004 1.90733 1.29744 1.73630 1.44183 1.42789 1.44553 1.10303 1.31395 1.17226 0.93664 1.00653 0.97557 1.20309 0.96806 0.98620 0.98083 1.21200 0.97573 1.01351 0.96066 1.17754 0.91896 0.89971 0.90586 1.19547 0.98212 1.27430 1.03784 0.90486 1.25899 0.94477 0.94352 0.99920 1.69765 1.05319 1.37815 1.30883 0.86133 0.80165 0.79234 0.80369 1.18557 1.19991 1.19961 1.20812 0.99906 0.99864 1.01961 1.20403 0.93004 0.98826 0.98159 1.23018 1.02315 0.93894 0.96234 1.22828 1.02864 0.96216 0.95736 1.23007 1.01662 0.94416 0.96728 0.91720 0.90268 0.90885 0.88474 0.88360 0.76872 0.88971 0.84944 0.91149 0.88480 0.87437 0.90389 0.88595 0.90613 0.89480 0.89512 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 9.01 37.16 0.33 -0.76 16 2 C -0.08 -0.78 1.33 -154.76 -0.21 -0.98 16 3 C 0.48 6.07 7.04 36.01 0.25 6.32 16 4 O -0.51 -7.30 15.65 -18.75 -0.29 -7.59 16 5 O -0.32 -4.69 9.38 -45.89 -0.43 -5.12 16 6 C 0.05 0.66 5.95 36.01 0.21 0.87 16 7 C 0.50 8.69 7.74 -10.99 -0.09 8.61 16 8 O -0.51 -11.08 13.92 -14.10 -0.20 -11.28 16 9 N -0.65 -11.06 5.30 -9.74 -0.05 -11.11 16 10 C 0.00 0.02 6.31 -83.57 -0.53 -0.51 16 11 C -0.12 -2.65 9.90 -39.79 -0.39 -3.04 16 12 C -0.14 -3.61 8.62 -39.26 -0.34 -3.95 16 13 C 0.10 2.68 5.55 -106.80 -0.59 2.08 16 14 C -0.46 -12.16 9.02 -37.85 -0.34 -12.50 16 15 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 16 C 0.07 1.73 5.42 -17.34 -0.09 1.63 16 17 N -0.81 -20.95 10.60 55.55 0.59 -20.36 16 18 Si 0.92 18.90 29.56 -169.99 -5.03 13.87 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 22 C -0.21 -5.18 9.74 -39.26 -0.38 -5.56 16 23 C -0.08 -2.00 8.61 -39.79 -0.34 -2.34 16 24 C -0.12 -0.92 7.00 -25.92 -0.18 -1.10 16 25 C -0.14 -0.88 7.72 -25.93 -0.20 -1.08 16 26 C -0.12 -0.99 7.21 -25.83 -0.19 -1.17 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.79 7.85 -51.93 -0.41 0.38 16 29 H 0.07 0.46 7.34 -51.93 -0.38 0.08 16 30 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 31 H 0.10 1.13 8.13 -51.93 -0.42 0.71 16 32 H 0.40 5.15 8.82 -40.82 -0.36 4.79 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 35 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 36 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 37 H 0.11 2.53 6.22 -52.49 -0.33 2.20 16 38 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 39 H 0.10 0.85 7.44 -51.92 -0.39 0.47 16 40 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 41 H 0.09 0.44 7.66 -51.93 -0.40 0.05 16 42 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -31.70 362.46 -8.94 -40.64 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.92 Total: 8.97 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -3.07 Total: -13.48 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.54 Total: -31.47 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.92 Total: -23.99 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.70 -8.94 -40.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750532384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.669 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds