Wall clock time and date at job start Tue Mar 31 2020 11:34:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50699 * 112.84777 * 2 1
4 4 O 1.20822 * 119.99790 * 131.19908 * 3 2 1
5 5 O 1.34224 * 120.00255 * 311.19035 * 3 2 1
6 6 C 1.45196 * 117.00214 * 180.02562 * 5 3 2
7 7 C 1.50706 * 109.47486 * 180.02562 * 6 5 3
8 8 O 1.21281 * 119.99663 * 359.97438 * 7 6 5
9 9 N 1.34767 * 120.00241 * 180.02562 * 7 6 5
10 10 C 1.39247 * 120.00380 * 175.70925 * 9 7 6
11 11 C 1.39477 * 119.83314 * 215.01346 * 10 9 7
12 12 C 1.36372 * 120.16734 * 179.75815 * 11 10 9
13 13 C 1.40874 * 119.82673 * 0.50932 * 12 11 10
14 14 C 1.41150 * 120.16395 * 179.71771 * 13 12 11
15 15 H 1.07998 * 120.00392 * 214.79985 * 14 13 12
16 16 C 1.39908 * 119.99914 * 34.80797 * 14 13 12
17 17 N 1.30870 * 120.00071 * 355.55688 * 16 14 13
18 18 Si 1.86795 * 119.99957 * 175.55576 * 16 14 13
19 19 H 1.48504 * 109.47257 * 0.02562 * 18 16 14
20 20 H 1.48503 * 109.47307 * 119.99888 * 18 16 14
21 21 H 1.48497 * 109.47376 * 240.00035 * 18 16 14
22 22 C 1.40873 * 119.67387 * 359.74368 * 13 12 11
23 23 C 1.36375 * 119.82401 * 359.97438 * 22 13 12
24 24 C 1.53776 * 113.61061 * 131.19798 * 2 1 3
25 25 C 1.53775 * 87.08221 * 89.11488 * 24 2 1
26 26 C 1.53775 * 87.17433 * 25.38822 * 25 24 2
27 27 H 1.09002 * 109.46960 * 288.80932 * 1 2 3
28 28 H 1.09002 * 109.46873 * 48.80697 * 1 2 3
29 29 H 1.08999 * 109.47171 * 168.80356 * 1 2 3
30 30 H 1.08997 * 109.47229 * 300.00151 * 6 5 3
31 31 H 1.08997 * 109.47246 * 60.00617 * 6 5 3
32 32 H 0.97000 * 120.00061 * 355.70084 * 9 7 6
33 33 H 1.07998 * 119.91832 * 0.02562 * 11 10 9
34 34 H 1.07994 * 120.09238 * 180.25090 * 12 11 10
35 35 H 0.96998 * 119.99863 * 180.02562 * 17 16 14
36 36 H 1.07991 * 120.08638 * 179.97438 * 22 13 12
37 37 H 1.08002 * 119.91325 * 179.97438 * 23 22 13
38 38 H 1.09003 * 113.61646 * 334.56154 * 24 2 1
39 39 H 1.09011 * 113.61057 * 203.66281 * 24 2 1
40 40 H 1.09009 * 113.61605 * 139.97551 * 25 24 2
41 41 H 1.09000 * 113.61558 * 270.79644 * 25 24 2
42 42 H 1.09002 * 113.61748 * 89.15846 * 26 25 24
43 43 H 1.09004 * 113.61518 * 220.06085 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1152 1.3887 0.0000
4 8 2.9849 1.6778 0.7873
5 8 1.6704 2.3045 -0.8747
6 6 2.2799 3.6211 -0.8179
7 6 1.6579 4.5083 -1.8654
8 8 0.7870 4.0736 -2.5889
9 7 2.0702 5.7844 -1.9988
10 6 1.5602 6.5774 -3.0236
11 6 2.3792 7.5207 -3.6441
12 6 1.8882 8.2974 -4.6517
13 6 0.5472 8.1526 -5.0583
14 6 0.0300 8.9570 -6.0964
15 1 -0.9981 9.2860 -6.0636
16 6 0.8492 9.3279 -7.1682
17 7 2.1169 9.0029 -7.1659
18 14 0.1335 10.2870 -8.6025
19 1 -1.3124 10.5281 -8.3645
20 1 0.8377 11.5884 -8.7284
21 1 0.3063 9.5076 -9.8546
22 6 -0.2752 7.2014 -4.4232
23 6 0.2316 6.4278 -3.4209
24 6 2.1460 -0.9281 1.0602
25 6 2.0929 -2.0425 0.0020
26 6 2.1448 -0.9318 -1.0602
27 1 -0.3633 0.3313 0.9728
28 1 -0.3633 0.6768 -0.7733
29 1 -0.3633 -1.0081 -0.1995
30 1 2.1165 4.0548 0.1686
31 1 3.3503 3.5343 -1.0040
32 1 2.7221 6.1507 -1.3809
33 1 3.4059 7.6332 -3.3286
34 1 2.5245 9.0246 -5.1340
35 1 2.6849 9.2604 -7.9089
36 1 -1.3043 7.0851 -4.7293
37 1 -0.3978 5.6984 -2.9328
38 1 1.4944 -1.1068 1.9157
39 1 3.1591 -0.6486 1.3496
40 1 2.9717 -2.6875 0.0025
41 1 1.1573 -2.6019 0.0035
42 1 3.1575 -0.6533 -1.3517
43 1 1.4923 -1.1135 -1.9143
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000750532384.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:34:18
Heat of formation + Delta-G solvation = -97.128731 kcal
Electronic energy + Delta-G solvation = -25336.171732 eV
Core-core repulsion = 21539.207099 eV
Total energy + Delta-G solvation = -3796.964632 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.146 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.16525 -41.22692 -39.66572 -38.98038 -37.45000 -36.20114 -34.78799 -31.67614
-31.41625 -30.79336 -29.50705 -26.83457 -26.64772 -25.91037 -23.57018 -22.88291
-22.42490 -21.40641 -19.89188 -19.29170 -18.85146 -18.56142 -17.83395 -17.72962
-17.48547 -17.00573 -16.31752 -15.96100 -15.68517 -15.54887 -15.03529 -14.65788
-14.56298 -14.34327 -14.12261 -13.94029 -13.60982 -13.48396 -13.33237 -13.26863
-13.22646 -12.89755 -12.77802 -12.49694 -12.32090 -12.28751 -11.95641 -11.79151
-11.51392 -11.41124 -11.33212 -11.26312 -11.20256 -10.87308 -10.66068 -9.49342
-8.78126 -8.52407 -6.35201 0.72153 1.00544 1.11493 1.20264 1.39372
1.39949 1.54334 1.66079 2.23431 2.38041 2.78320 3.31006 3.44387
3.52212 3.65603 3.69633 3.81306 3.84298 3.99423 3.99802 4.37757
4.49965 4.50895 4.63793 4.70140 4.81611 4.85027 4.90621 5.02184
5.03544 5.08789 5.10716 5.12061 5.19460 5.28060 5.29942 5.39733
5.46039 5.67481 5.86406 5.98022 6.10926 6.36256 6.51167 6.62461
6.66331 6.94986 6.96566 7.23665 8.40540
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.031149 B = 0.002180 C = 0.002133
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 898.697656 B =12843.796902 C =13125.112532
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.091 4.091
3 C 0.474 3.526
4 O -0.529 6.529
5 O -0.344 6.344
6 C 0.056 3.944
7 C 0.501 3.499
8 O -0.555 6.555
9 N -0.635 5.635
10 C 0.017 3.983
11 C -0.114 4.114
12 C -0.160 4.160
13 C 0.068 3.932
14 C -0.495 4.495
15 H 0.073 0.927
16 C 0.027 3.973
17 N -0.840 5.840
18 Si 0.989 3.011
19 H -0.260 1.260
20 H -0.263 1.263
21 H -0.269 1.269
22 C -0.221 4.221
23 C -0.096 4.096
24 C -0.115 4.115
25 C -0.124 4.124
26 C -0.126 4.126
27 H 0.069 0.931
28 H 0.057 0.943
29 H 0.096 0.904
30 H 0.125 0.875
31 H 0.122 0.878
32 H 0.422 0.578
33 H 0.128 0.872
34 H 0.120 0.880
35 H 0.285 0.715
36 H 0.097 0.903
37 H 0.108 0.892
38 H 0.091 0.909
39 H 0.083 0.917
40 H 0.086 0.914
41 H 0.105 0.895
42 H 0.078 0.922
43 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.790 -16.713 14.233 22.129
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.092 4.092
3 C 0.319 3.681
4 O -0.418 6.418
5 O -0.259 6.259
6 C -0.021 4.021
7 C 0.288 3.712
8 O -0.433 6.433
9 N -0.282 5.282
10 C -0.076 4.076
11 C -0.134 4.134
12 C -0.180 4.180
13 C 0.066 3.934
14 C -0.526 4.526
15 H 0.091 0.909
16 C -0.185 4.185
17 N -0.468 5.468
18 Si 0.810 3.190
19 H -0.184 1.184
20 H -0.187 1.187
21 H -0.194 1.194
22 C -0.241 4.241
23 C -0.115 4.115
24 C -0.153 4.153
25 C -0.161 4.161
26 C -0.163 4.163
27 H 0.088 0.912
28 H 0.076 0.924
29 H 0.115 0.885
30 H 0.143 0.857
31 H 0.140 0.860
32 H 0.260 0.740
33 H 0.146 0.854
34 H 0.138 0.862
35 H 0.096 0.904
36 H 0.115 0.885
37 H 0.126 0.874
38 H 0.109 0.891
39 H 0.101 0.899
40 H 0.105 0.895
41 H 0.124 0.876
42 H 0.097 0.903
43 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 2.665 -16.910 13.833 22.009
hybrid contribution 0.209 1.058 -0.540 1.206
sum 2.874 -15.852 13.293 20.887
Atomic orbital electron populations
1.21636 0.89230 1.04538 1.03010 1.22326 0.98827 0.85118 1.02927
1.24379 0.79705 0.87756 0.76301 1.90624 1.31208 1.80692 1.39278
1.86591 1.61474 1.21504 1.56379 1.22716 0.98937 0.80762 0.99648
1.20627 0.83250 0.82367 0.84920 1.90721 1.31879 1.74518 1.46148
1.42654 1.44750 1.10124 1.30698 1.17264 0.92821 0.99973 0.97537
1.20563 0.98385 0.97635 0.96862 1.21193 0.97225 1.02255 0.97356
1.18071 0.92932 0.90948 0.91476 1.19758 0.98552 1.29140 1.05127
0.90879 1.26754 0.94715 0.94946 1.02114 1.69822 1.06374 1.38576
1.31989 0.85045 0.79343 0.78006 0.76582 1.18400 1.18722 1.19434
1.20936 1.00084 1.00334 1.02764 1.20520 0.94181 0.98661 0.98186
1.23027 1.01682 0.93833 0.96724 1.22820 1.04337 0.95485 0.93484
1.23077 1.01153 0.94953 0.97149 0.91218 0.92397 0.88494 0.85696
0.86024 0.74026 0.85448 0.86180 0.90422 0.88499 0.87421 0.89050
0.89862 0.89540 0.87642 0.90334 0.89362
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.92 9.01 71.98 0.65 -1.28 16
2 C -0.09 -1.60 1.33 -52.34 -0.07 -1.67 16
3 C 0.47 11.53 7.04 71.24 0.50 12.03 16
4 O -0.53 -14.35 15.65 21.98 0.34 -14.01 16
5 O -0.34 -9.59 9.38 -45.01 -0.42 -10.02 16
6 C 0.06 1.38 5.95 71.24 0.42 1.80 16
7 C 0.50 16.77 7.74 87.66 0.68 17.44 16
8 O -0.56 -24.17 13.92 15.77 0.22 -23.95 16
9 N -0.64 -20.49 5.30 -303.12 -1.61 -22.10 16
10 C 0.02 0.74 6.31 38.56 0.24 0.98 16
11 C -0.11 -5.05 9.90 22.13 0.22 -4.83 16
12 C -0.16 -8.31 8.62 22.48 0.19 -8.12 16
13 C 0.07 3.76 5.55 -21.27 -0.12 3.64 16
14 C -0.50 -27.19 9.02 23.39 0.21 -26.98 16
15 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16
16 C 0.03 1.37 5.42 85.24 0.46 1.83 16
17 N -0.84 -44.17 10.60 21.82 0.23 -43.94 16
18 Si 0.99 39.10 29.56 68.60 2.03 41.13 16
19 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16
20 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16
21 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16
22 C -0.22 -11.55 9.74 22.48 0.22 -11.33 16
23 C -0.10 -4.61 8.61 22.13 0.19 -4.42 16
24 C -0.12 -1.57 7.00 31.12 0.22 -1.35 16
25 C -0.12 -1.22 7.72 31.12 0.24 -0.98 16
26 C -0.13 -1.86 7.21 31.18 0.22 -1.63 16
27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16
28 H 0.06 1.13 7.85 -2.39 -0.02 1.11 16
29 H 0.10 0.98 7.34 -2.39 -0.02 0.96 16
30 H 0.13 2.40 8.13 -2.39 -0.02 2.38 16
31 H 0.12 2.45 8.13 -2.39 -0.02 2.43 16
32 H 0.42 9.60 8.82 -92.71 -0.82 8.78 16
33 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16
34 H 0.12 6.48 6.13 -2.91 -0.02 6.46 16
35 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16
36 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16
37 H 0.11 5.16 6.22 -2.91 -0.02 5.14 16
38 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16
39 H 0.08 1.36 7.44 -2.38 -0.02 1.34 16
40 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16
41 H 0.11 0.68 7.66 -2.39 -0.02 0.67 16
42 H 0.08 1.27 8.10 -2.39 -0.02 1.25 16
43 H 0.09 1.23 8.10 -2.39 -0.02 1.21 16
Total: -1.00 -70.90 362.46 5.50 -65.40
By element:
Atomic # 1 Polarization: 32.12 SS G_CDS: 0.22 Total: 32.34 kcal
Atomic # 6 Polarization: -29.34 SS G_CDS: 4.49 Total: -24.85 kcal
Atomic # 7 Polarization: -64.66 SS G_CDS: -1.38 Total: -66.04 kcal
Atomic # 8 Polarization: -48.11 SS G_CDS: 0.14 Total: -47.97 kcal
Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal
Total: -70.90 5.50 -65.40 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000750532384.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.726 kcal
(2) G-P(sol) polarization free energy of solvation -70.903 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.628 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.403 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.129 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds