Wall clock time and date at job start Tue Mar 31 2020 11:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 112.84777 * 2 1 4 4 O 1.20822 * 119.99790 * 131.19908 * 3 2 1 5 5 O 1.34224 * 120.00255 * 311.19035 * 3 2 1 6 6 C 1.45196 * 117.00214 * 180.02562 * 5 3 2 7 7 C 1.50706 * 109.47486 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99663 * 359.97438 * 7 6 5 9 9 N 1.34767 * 120.00241 * 180.02562 * 7 6 5 10 10 C 1.39247 * 120.00380 * 175.70925 * 9 7 6 11 11 C 1.39477 * 119.83314 * 215.01346 * 10 9 7 12 12 C 1.36372 * 120.16734 * 179.75815 * 11 10 9 13 13 C 1.40874 * 119.82673 * 0.50932 * 12 11 10 14 14 C 1.41150 * 120.16395 * 179.71771 * 13 12 11 15 15 H 1.07998 * 120.00392 * 214.79985 * 14 13 12 16 16 C 1.39908 * 119.99914 * 34.80797 * 14 13 12 17 17 N 1.30870 * 120.00071 * 355.55688 * 16 14 13 18 18 Si 1.86795 * 119.99957 * 175.55576 * 16 14 13 19 19 H 1.48504 * 109.47257 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47307 * 119.99888 * 18 16 14 21 21 H 1.48497 * 109.47376 * 240.00035 * 18 16 14 22 22 C 1.40873 * 119.67387 * 359.74368 * 13 12 11 23 23 C 1.36375 * 119.82401 * 359.97438 * 22 13 12 24 24 C 1.53776 * 113.61061 * 131.19798 * 2 1 3 25 25 C 1.53775 * 87.08221 * 89.11488 * 24 2 1 26 26 C 1.53775 * 87.17433 * 25.38822 * 25 24 2 27 27 H 1.09002 * 109.46960 * 288.80932 * 1 2 3 28 28 H 1.09002 * 109.46873 * 48.80697 * 1 2 3 29 29 H 1.08999 * 109.47171 * 168.80356 * 1 2 3 30 30 H 1.08997 * 109.47229 * 300.00151 * 6 5 3 31 31 H 1.08997 * 109.47246 * 60.00617 * 6 5 3 32 32 H 0.97000 * 120.00061 * 355.70084 * 9 7 6 33 33 H 1.07998 * 119.91832 * 0.02562 * 11 10 9 34 34 H 1.07994 * 120.09238 * 180.25090 * 12 11 10 35 35 H 0.96998 * 119.99863 * 180.02562 * 17 16 14 36 36 H 1.07991 * 120.08638 * 179.97438 * 22 13 12 37 37 H 1.08002 * 119.91325 * 179.97438 * 23 22 13 38 38 H 1.09003 * 113.61646 * 334.56154 * 24 2 1 39 39 H 1.09011 * 113.61057 * 203.66281 * 24 2 1 40 40 H 1.09009 * 113.61605 * 139.97551 * 25 24 2 41 41 H 1.09000 * 113.61558 * 270.79644 * 25 24 2 42 42 H 1.09002 * 113.61748 * 89.15846 * 26 25 24 43 43 H 1.09004 * 113.61518 * 220.06085 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9849 1.6778 0.7873 5 8 1.6704 2.3045 -0.8747 6 6 2.2799 3.6211 -0.8179 7 6 1.6579 4.5083 -1.8654 8 8 0.7870 4.0736 -2.5889 9 7 2.0702 5.7844 -1.9988 10 6 1.5602 6.5774 -3.0236 11 6 2.3792 7.5207 -3.6441 12 6 1.8882 8.2974 -4.6517 13 6 0.5472 8.1526 -5.0583 14 6 0.0300 8.9570 -6.0964 15 1 -0.9981 9.2860 -6.0636 16 6 0.8492 9.3279 -7.1682 17 7 2.1169 9.0029 -7.1659 18 14 0.1335 10.2870 -8.6025 19 1 -1.3124 10.5281 -8.3645 20 1 0.8377 11.5884 -8.7284 21 1 0.3063 9.5076 -9.8546 22 6 -0.2752 7.2014 -4.4232 23 6 0.2316 6.4278 -3.4209 24 6 2.1460 -0.9281 1.0602 25 6 2.0929 -2.0425 0.0020 26 6 2.1448 -0.9318 -1.0602 27 1 -0.3633 0.3313 0.9728 28 1 -0.3633 0.6768 -0.7733 29 1 -0.3633 -1.0081 -0.1995 30 1 2.1165 4.0548 0.1686 31 1 3.3503 3.5343 -1.0040 32 1 2.7221 6.1507 -1.3809 33 1 3.4059 7.6332 -3.3286 34 1 2.5245 9.0246 -5.1340 35 1 2.6849 9.2604 -7.9089 36 1 -1.3043 7.0851 -4.7293 37 1 -0.3978 5.6984 -2.9328 38 1 1.4944 -1.1068 1.9157 39 1 3.1591 -0.6486 1.3496 40 1 2.9717 -2.6875 0.0025 41 1 1.1573 -2.6019 0.0035 42 1 3.1575 -0.6533 -1.3517 43 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750532384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:18 Heat of formation + Delta-G solvation = -97.128731 kcal Electronic energy + Delta-G solvation = -25336.171732 eV Core-core repulsion = 21539.207099 eV Total energy + Delta-G solvation = -3796.964632 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.16525 -41.22692 -39.66572 -38.98038 -37.45000 -36.20114 -34.78799 -31.67614 -31.41625 -30.79336 -29.50705 -26.83457 -26.64772 -25.91037 -23.57018 -22.88291 -22.42490 -21.40641 -19.89188 -19.29170 -18.85146 -18.56142 -17.83395 -17.72962 -17.48547 -17.00573 -16.31752 -15.96100 -15.68517 -15.54887 -15.03529 -14.65788 -14.56298 -14.34327 -14.12261 -13.94029 -13.60982 -13.48396 -13.33237 -13.26863 -13.22646 -12.89755 -12.77802 -12.49694 -12.32090 -12.28751 -11.95641 -11.79151 -11.51392 -11.41124 -11.33212 -11.26312 -11.20256 -10.87308 -10.66068 -9.49342 -8.78126 -8.52407 -6.35201 0.72153 1.00544 1.11493 1.20264 1.39372 1.39949 1.54334 1.66079 2.23431 2.38041 2.78320 3.31006 3.44387 3.52212 3.65603 3.69633 3.81306 3.84298 3.99423 3.99802 4.37757 4.49965 4.50895 4.63793 4.70140 4.81611 4.85027 4.90621 5.02184 5.03544 5.08789 5.10716 5.12061 5.19460 5.28060 5.29942 5.39733 5.46039 5.67481 5.86406 5.98022 6.10926 6.36256 6.51167 6.62461 6.66331 6.94986 6.96566 7.23665 8.40540 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031149 B = 0.002180 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.697656 B =12843.796902 C =13125.112532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C 0.474 3.526 4 O -0.529 6.529 5 O -0.344 6.344 6 C 0.056 3.944 7 C 0.501 3.499 8 O -0.555 6.555 9 N -0.635 5.635 10 C 0.017 3.983 11 C -0.114 4.114 12 C -0.160 4.160 13 C 0.068 3.932 14 C -0.495 4.495 15 H 0.073 0.927 16 C 0.027 3.973 17 N -0.840 5.840 18 Si 0.989 3.011 19 H -0.260 1.260 20 H -0.263 1.263 21 H -0.269 1.269 22 C -0.221 4.221 23 C -0.096 4.096 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.126 4.126 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.422 0.578 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.285 0.715 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.790 -16.713 14.233 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.092 4.092 3 C 0.319 3.681 4 O -0.418 6.418 5 O -0.259 6.259 6 C -0.021 4.021 7 C 0.288 3.712 8 O -0.433 6.433 9 N -0.282 5.282 10 C -0.076 4.076 11 C -0.134 4.134 12 C -0.180 4.180 13 C 0.066 3.934 14 C -0.526 4.526 15 H 0.091 0.909 16 C -0.185 4.185 17 N -0.468 5.468 18 Si 0.810 3.190 19 H -0.184 1.184 20 H -0.187 1.187 21 H -0.194 1.194 22 C -0.241 4.241 23 C -0.115 4.115 24 C -0.153 4.153 25 C -0.161 4.161 26 C -0.163 4.163 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.260 0.740 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.097 0.903 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.665 -16.910 13.833 22.009 hybrid contribution 0.209 1.058 -0.540 1.206 sum 2.874 -15.852 13.293 20.887 Atomic orbital electron populations 1.21636 0.89230 1.04538 1.03010 1.22326 0.98827 0.85118 1.02927 1.24379 0.79705 0.87756 0.76301 1.90624 1.31208 1.80692 1.39278 1.86591 1.61474 1.21504 1.56379 1.22716 0.98937 0.80762 0.99648 1.20627 0.83250 0.82367 0.84920 1.90721 1.31879 1.74518 1.46148 1.42654 1.44750 1.10124 1.30698 1.17264 0.92821 0.99973 0.97537 1.20563 0.98385 0.97635 0.96862 1.21193 0.97225 1.02255 0.97356 1.18071 0.92932 0.90948 0.91476 1.19758 0.98552 1.29140 1.05127 0.90879 1.26754 0.94715 0.94946 1.02114 1.69822 1.06374 1.38576 1.31989 0.85045 0.79343 0.78006 0.76582 1.18400 1.18722 1.19434 1.20936 1.00084 1.00334 1.02764 1.20520 0.94181 0.98661 0.98186 1.23027 1.01682 0.93833 0.96724 1.22820 1.04337 0.95485 0.93484 1.23077 1.01153 0.94953 0.97149 0.91218 0.92397 0.88494 0.85696 0.86024 0.74026 0.85448 0.86180 0.90422 0.88499 0.87421 0.89050 0.89862 0.89540 0.87642 0.90334 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.01 71.98 0.65 -1.28 16 2 C -0.09 -1.60 1.33 -52.34 -0.07 -1.67 16 3 C 0.47 11.53 7.04 71.24 0.50 12.03 16 4 O -0.53 -14.35 15.65 21.98 0.34 -14.01 16 5 O -0.34 -9.59 9.38 -45.01 -0.42 -10.02 16 6 C 0.06 1.38 5.95 71.24 0.42 1.80 16 7 C 0.50 16.77 7.74 87.66 0.68 17.44 16 8 O -0.56 -24.17 13.92 15.77 0.22 -23.95 16 9 N -0.64 -20.49 5.30 -303.12 -1.61 -22.10 16 10 C 0.02 0.74 6.31 38.56 0.24 0.98 16 11 C -0.11 -5.05 9.90 22.13 0.22 -4.83 16 12 C -0.16 -8.31 8.62 22.48 0.19 -8.12 16 13 C 0.07 3.76 5.55 -21.27 -0.12 3.64 16 14 C -0.50 -27.19 9.02 23.39 0.21 -26.98 16 15 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 16 C 0.03 1.37 5.42 85.24 0.46 1.83 16 17 N -0.84 -44.17 10.60 21.82 0.23 -43.94 16 18 Si 0.99 39.10 29.56 68.60 2.03 41.13 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 20 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 21 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 22 C -0.22 -11.55 9.74 22.48 0.22 -11.33 16 23 C -0.10 -4.61 8.61 22.13 0.19 -4.42 16 24 C -0.12 -1.57 7.00 31.12 0.22 -1.35 16 25 C -0.12 -1.22 7.72 31.12 0.24 -0.98 16 26 C -0.13 -1.86 7.21 31.18 0.22 -1.63 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.13 7.85 -2.39 -0.02 1.11 16 29 H 0.10 0.98 7.34 -2.39 -0.02 0.96 16 30 H 0.13 2.40 8.13 -2.39 -0.02 2.38 16 31 H 0.12 2.45 8.13 -2.39 -0.02 2.43 16 32 H 0.42 9.60 8.82 -92.71 -0.82 8.78 16 33 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 34 H 0.12 6.48 6.13 -2.91 -0.02 6.46 16 35 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 36 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 37 H 0.11 5.16 6.22 -2.91 -0.02 5.14 16 38 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 39 H 0.08 1.36 7.44 -2.38 -0.02 1.34 16 40 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.11 0.68 7.66 -2.39 -0.02 0.67 16 42 H 0.08 1.27 8.10 -2.39 -0.02 1.25 16 43 H 0.09 1.23 8.10 -2.39 -0.02 1.21 16 Total: -1.00 -70.90 362.46 5.50 -65.40 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.22 Total: 32.34 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 4.49 Total: -24.85 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -1.38 Total: -66.04 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: 0.14 Total: -47.97 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -70.90 5.50 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750532384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.726 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds