Wall clock time and date at job start Tue Mar 31 2020 11:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99935 * 2 1 4 4 H 1.48503 * 109.47091 * 270.00246 * 3 2 1 5 5 H 1.48503 * 109.47174 * 30.00021 * 3 2 1 6 6 H 1.48495 * 109.47243 * 149.99966 * 3 2 1 7 7 C 1.37876 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99726 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46920 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47048 * 180.02562 * 10 9 7 12 12 O 1.45199 * 109.46998 * 180.02562 * 11 10 9 13 13 C 1.34760 * 117.00052 * 179.97438 * 12 11 10 14 14 O 1.21511 * 119.99506 * 0.02562 * 13 12 11 15 15 C 1.47456 * 120.00213 * 179.97438 * 13 12 11 16 16 C 1.39802 * 120.07747 * 180.02562 * 15 13 12 17 17 C 1.37650 * 119.92195 * 180.02562 * 16 15 13 18 18 C 1.39152 * 120.07452 * 0.02562 * 17 16 15 19 19 N 1.39415 * 119.91909 * 179.97438 * 18 17 16 20 20 C 1.46760 * 124.35039 * 174.17970 * 19 18 17 21 21 C 1.54483 * 105.47495 * 197.01498 * 20 19 18 22 22 C 1.54632 * 101.76162 * 334.58134 * 21 20 19 23 23 C 1.34420 * 124.35018 * 353.87236 * 19 18 17 24 24 O 1.21283 * 124.94029 * 359.57978 * 23 19 18 25 25 C 1.39145 * 120.16160 * 0.24774 * 18 17 16 26 26 C 1.37649 * 120.07539 * 359.45044 * 25 18 17 27 27 H 0.97006 * 119.99980 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47080 * 59.99832 * 9 7 2 29 29 H 1.08996 * 109.46883 * 300.00120 * 9 7 2 30 30 H 1.09004 * 109.47275 * 60.00215 * 10 9 7 31 31 H 1.09001 * 109.47304 * 300.00199 * 10 9 7 32 32 H 1.09001 * 109.47199 * 60.00421 * 11 10 9 33 33 H 1.08998 * 109.47467 * 299.99778 * 11 10 9 34 34 H 1.07996 * 120.04229 * 0.02562 * 16 15 13 35 35 H 1.08003 * 119.96381 * 179.97438 * 17 16 15 36 36 H 1.09007 * 110.24253 * 316.01184 * 20 19 18 37 37 H 1.09001 * 110.25115 * 77.92489 * 20 19 18 38 38 H 1.09003 * 110.96764 * 92.69989 * 21 20 19 39 39 H 1.08993 * 110.97121 * 216.46148 * 21 20 19 40 40 H 1.09005 * 110.48552 * 143.47386 * 22 21 20 41 41 H 1.08998 * 110.48476 * 265.98719 * 22 21 20 42 42 H 1.07997 * 119.96161 * 179.72608 * 25 18 17 43 43 H 1.08001 * 120.04079 * 180.24832 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4804 -4.9870 0.0033 12 8 2.4240 -6.0906 0.0049 13 6 1.9090 -7.3359 0.0061 14 8 0.7044 -7.4951 0.0053 15 6 2.8073 -8.5053 0.0072 16 6 2.2747 -9.7979 0.0079 17 6 3.1162 -10.8872 0.0094 18 6 4.4954 -10.7029 0.0108 19 7 5.3447 -11.8085 0.0129 20 6 6.8053 -11.7310 -0.1084 21 6 7.2631 -13.1555 -0.4928 22 6 6.1170 -14.0205 0.0810 23 6 4.9316 -13.0821 0.1322 24 8 3.7763 -13.4285 0.2595 25 6 5.0291 -9.4178 0.0159 26 6 4.1935 -8.3239 0.0081 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5575 -0.8880 29 1 0.6248 -2.5562 0.8919 30 1 2.8720 -3.6035 0.8927 31 1 2.8720 -3.6050 -0.8873 32 1 0.8541 -5.0453 -0.8869 33 1 0.8535 -5.0443 0.8931 34 1 1.2043 -9.9416 0.0072 35 1 2.7055 -11.8861 0.0104 36 1 7.0818 -11.0223 -0.8891 37 1 7.2477 -11.4351 0.8429 38 1 7.3300 -13.2648 -1.5753 39 1 8.2128 -13.4014 -0.0180 40 1 5.9104 -14.8650 -0.5767 41 1 6.3678 -14.3704 1.0823 42 1 6.1000 -9.2785 0.0214 43 1 4.6084 -7.3268 0.0079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752627698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:00 Heat of formation + Delta-G solvation = -102.105803 kcal Electronic energy + Delta-G solvation = -24706.350485 eV Core-core repulsion = 20909.170031 eV Total energy + Delta-G solvation = -3797.180454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62769 -40.24506 -38.62235 -37.16651 -36.31410 -34.00384 -33.69372 -31.72351 -31.32774 -29.89588 -28.32686 -27.08721 -24.76677 -23.64453 -23.15189 -21.79785 -21.06950 -20.33924 -20.14364 -18.22006 -17.81049 -17.34868 -16.82268 -16.20936 -16.12228 -16.05479 -15.19967 -14.60586 -14.51115 -14.44332 -14.31224 -14.26528 -14.00939 -13.83826 -13.58606 -13.22245 -12.89277 -12.62941 -12.19059 -12.16036 -12.07814 -11.87892 -11.74569 -11.49028 -10.96494 -10.67119 -10.66460 -10.61715 -10.41185 -10.35042 -10.11759 -9.69948 -9.49664 -9.32574 -9.15285 -8.38957 -8.37797 -6.02448 -4.05508 0.44493 1.10358 1.91626 2.20589 2.65905 2.92206 3.31463 3.37625 3.41032 3.58266 3.62412 3.74218 4.11909 4.28094 4.43937 4.50117 4.62774 4.75363 4.79090 4.83812 5.00853 5.02179 5.09729 5.16887 5.19832 5.26866 5.33414 5.61518 5.65725 5.70761 5.76246 5.88293 6.03770 6.08366 6.15829 6.51740 6.53952 6.56086 6.62652 6.86457 7.00061 7.45898 7.61738 7.73002 7.95526 7.98074 8.36994 9.00705 9.58616 11.08937 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030867 B = 0.001890 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.895877 B =14813.273669 C =15664.839658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.069 3.931 12 O -0.355 6.355 13 C 0.505 3.495 14 O -0.511 6.511 15 C -0.147 4.147 16 C -0.025 4.025 17 C -0.172 4.172 18 C 0.194 3.806 19 N -0.559 5.559 20 C 0.091 3.909 21 C -0.131 4.131 22 C -0.153 4.153 23 C 0.515 3.485 24 O -0.504 6.504 25 C -0.173 4.173 26 C -0.031 4.031 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.134 0.866 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.812 -29.634 -0.567 34.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.004 4.004 12 O -0.271 6.271 13 C 0.350 3.650 14 O -0.402 6.402 15 C -0.149 4.149 16 C -0.044 4.044 17 C -0.192 4.192 18 C 0.099 3.901 19 N -0.282 5.282 20 C -0.031 4.031 21 C -0.169 4.169 22 C -0.193 4.193 23 C 0.304 3.696 24 O -0.379 6.379 25 C -0.194 4.194 26 C -0.049 4.049 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.160 0.840 35 H 0.179 0.821 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.152 0.848 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 16.689 -29.727 -0.494 34.096 hybrid contribution 0.315 1.123 0.011 1.167 sum 17.004 -28.604 -0.483 33.280 Atomic orbital electron populations 1.69969 1.06074 1.26737 1.50524 1.25037 0.94885 0.99360 0.95235 0.86544 0.79790 0.83258 0.78107 1.20636 1.21202 1.19835 1.21170 0.93105 0.90679 1.50988 0.92434 1.19057 0.93869 0.90738 0.97733 1.21762 0.99934 0.90975 1.01931 1.23519 0.91209 0.83410 1.02258 1.86532 1.42372 1.14833 1.83384 1.21028 0.87095 0.83822 0.73095 1.90830 1.16194 1.87010 1.46117 1.19225 0.93155 0.91506 1.11047 1.21191 1.00919 0.89881 0.92383 1.21542 0.90917 1.01579 1.05171 1.18032 0.89767 0.86108 0.96201 1.45798 1.08133 1.05703 1.68572 1.22354 0.78048 0.99323 1.03331 1.22632 0.98828 0.92674 1.02752 1.22357 0.93381 0.98643 1.04937 1.21190 0.90426 0.83016 0.74953 1.90660 1.20192 1.79440 1.47564 1.20728 1.00421 0.90135 1.08082 1.21327 0.91729 0.99555 0.92326 0.92902 0.96195 0.96196 0.92134 0.92145 0.91434 0.91445 0.83991 0.82108 0.89042 0.89695 0.89412 0.88361 0.87271 0.87137 0.84849 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.27 5.53 -26.74 -0.15 -2.42 16 11 C 0.07 1.31 5.48 37.16 0.20 1.51 16 12 O -0.35 -6.14 9.46 -40.66 -0.38 -6.52 16 13 C 0.50 8.44 7.89 34.49 0.27 8.71 16 14 O -0.51 -9.85 16.13 -19.27 -0.31 -10.16 16 15 C -0.15 -1.98 5.87 -104.97 -0.62 -2.60 16 16 C -0.02 -0.31 9.58 -39.21 -0.38 -0.69 16 17 C -0.17 -2.00 9.26 -39.46 -0.37 -2.36 16 18 C 0.19 1.91 6.60 -83.73 -0.55 1.36 16 19 N -0.56 -4.17 3.12 -112.26 -0.35 -4.52 16 20 C 0.09 0.29 6.24 -3.12 -0.02 0.27 16 21 C -0.13 -0.17 7.18 -25.10 -0.18 -0.35 16 22 C -0.15 -0.51 6.86 -26.74 -0.18 -0.70 16 23 C 0.51 4.23 7.92 -10.86 -0.09 4.14 16 24 O -0.50 -6.08 14.79 5.55 0.08 -6.00 16 25 C -0.17 -1.53 9.38 -39.46 -0.37 -1.90 16 26 C -0.03 -0.33 9.60 -39.21 -0.38 -0.71 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.14 1.76 7.64 -52.49 -0.40 1.36 16 35 H 0.16 1.98 5.23 -52.48 -0.27 1.71 16 36 H 0.09 0.21 7.69 -51.93 -0.40 -0.19 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.10 -0.06 8.14 -51.93 -0.42 -0.49 16 40 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.13 0.78 6.99 -52.49 -0.37 0.41 16 43 H 0.15 1.47 7.60 -52.49 -0.40 1.07 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -34.98 365.34 -9.12 -44.10 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -6.03 Total: -3.97 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -3.35 Total: -8.81 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.39 Total: -30.74 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.61 Total: -22.69 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.98 -9.12 -44.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752627698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.001 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds