Wall clock time and date at job start Tue Mar 31 2020 11:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99935 * 2 1 4 4 H 1.48503 * 109.47091 * 270.00246 * 3 2 1 5 5 H 1.48503 * 109.47174 * 30.00021 * 3 2 1 6 6 H 1.48495 * 109.47243 * 149.99966 * 3 2 1 7 7 C 1.37876 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99726 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46920 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47048 * 180.02562 * 10 9 7 12 12 O 1.45199 * 109.46998 * 180.02562 * 11 10 9 13 13 C 1.34760 * 117.00052 * 179.97438 * 12 11 10 14 14 O 1.21511 * 119.99506 * 0.02562 * 13 12 11 15 15 C 1.47456 * 120.00213 * 179.97438 * 13 12 11 16 16 C 1.39802 * 120.07747 * 180.02562 * 15 13 12 17 17 C 1.37650 * 119.92195 * 180.02562 * 16 15 13 18 18 C 1.39152 * 120.07452 * 0.02562 * 17 16 15 19 19 N 1.39415 * 119.91909 * 179.97438 * 18 17 16 20 20 C 1.46760 * 124.35039 * 174.17970 * 19 18 17 21 21 C 1.54483 * 105.47495 * 197.01498 * 20 19 18 22 22 C 1.54632 * 101.76162 * 334.58134 * 21 20 19 23 23 C 1.34420 * 124.35018 * 353.87236 * 19 18 17 24 24 O 1.21283 * 124.94029 * 359.57978 * 23 19 18 25 25 C 1.39145 * 120.16160 * 0.24774 * 18 17 16 26 26 C 1.37649 * 120.07539 * 359.45044 * 25 18 17 27 27 H 0.97006 * 119.99980 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47080 * 59.99832 * 9 7 2 29 29 H 1.08996 * 109.46883 * 300.00120 * 9 7 2 30 30 H 1.09004 * 109.47275 * 60.00215 * 10 9 7 31 31 H 1.09001 * 109.47304 * 300.00199 * 10 9 7 32 32 H 1.09001 * 109.47199 * 60.00421 * 11 10 9 33 33 H 1.08998 * 109.47467 * 299.99778 * 11 10 9 34 34 H 1.07996 * 120.04229 * 0.02562 * 16 15 13 35 35 H 1.08003 * 119.96381 * 179.97438 * 17 16 15 36 36 H 1.09007 * 110.24253 * 316.01184 * 20 19 18 37 37 H 1.09001 * 110.25115 * 77.92489 * 20 19 18 38 38 H 1.09003 * 110.96764 * 92.69989 * 21 20 19 39 39 H 1.08993 * 110.97121 * 216.46148 * 21 20 19 40 40 H 1.09005 * 110.48552 * 143.47386 * 22 21 20 41 41 H 1.08998 * 110.48476 * 265.98719 * 22 21 20 42 42 H 1.07997 * 119.96161 * 179.72608 * 25 18 17 43 43 H 1.08001 * 120.04079 * 180.24832 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4804 -4.9870 0.0033 12 8 2.4240 -6.0906 0.0049 13 6 1.9090 -7.3359 0.0061 14 8 0.7044 -7.4951 0.0053 15 6 2.8073 -8.5053 0.0072 16 6 2.2747 -9.7979 0.0079 17 6 3.1162 -10.8872 0.0094 18 6 4.4954 -10.7029 0.0108 19 7 5.3447 -11.8085 0.0129 20 6 6.8053 -11.7310 -0.1084 21 6 7.2631 -13.1555 -0.4928 22 6 6.1170 -14.0205 0.0810 23 6 4.9316 -13.0821 0.1322 24 8 3.7763 -13.4285 0.2595 25 6 5.0291 -9.4178 0.0159 26 6 4.1935 -8.3239 0.0081 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5575 -0.8880 29 1 0.6248 -2.5562 0.8919 30 1 2.8720 -3.6035 0.8927 31 1 2.8720 -3.6050 -0.8873 32 1 0.8541 -5.0453 -0.8869 33 1 0.8535 -5.0443 0.8931 34 1 1.2043 -9.9416 0.0072 35 1 2.7055 -11.8861 0.0104 36 1 7.0818 -11.0223 -0.8891 37 1 7.2477 -11.4351 0.8429 38 1 7.3300 -13.2648 -1.5753 39 1 8.2128 -13.4014 -0.0180 40 1 5.9104 -14.8650 -0.5767 41 1 6.3678 -14.3704 1.0823 42 1 6.1000 -9.2785 0.0214 43 1 4.6084 -7.3268 0.0079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752627698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:59 Heat of formation + Delta-G solvation = -121.938075 kcal Electronic energy + Delta-G solvation = -24707.210477 eV Core-core repulsion = 20909.170031 eV Total energy + Delta-G solvation = -3798.040446 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.24789 -41.50908 -39.54454 -37.89527 -37.64199 -35.93714 -34.34377 -33.64614 -32.21192 -30.72756 -28.93374 -28.66401 -25.97468 -24.77643 -24.26257 -22.57936 -22.17897 -21.89672 -20.91313 -19.13453 -18.78347 -18.57169 -17.80044 -17.75504 -17.66806 -16.72023 -16.48707 -16.00101 -15.70268 -15.40829 -15.24344 -14.81553 -14.73710 -14.63077 -14.51548 -14.19925 -13.96818 -13.93509 -13.75731 -13.47836 -13.24772 -12.82507 -12.52009 -12.48067 -12.37996 -12.28481 -12.09197 -12.00521 -11.86293 -11.46260 -11.43021 -11.26532 -11.23912 -10.81079 -10.56888 -10.18758 -9.16189 -8.21034 -6.32779 -0.51360 0.25066 1.13895 1.41870 1.43874 1.53724 1.57250 1.63117 1.68751 2.42043 2.68821 3.12812 3.21225 3.52417 3.56798 3.78229 3.85415 3.97567 3.99261 4.05887 4.07095 4.15292 4.24012 4.39709 4.44766 4.62025 4.65310 4.78237 4.79786 4.83450 4.94069 4.99019 5.06083 5.08106 5.10577 5.20090 5.25261 5.29966 5.39695 5.50393 5.63887 5.80431 5.81057 5.93134 6.19124 6.62584 6.83223 6.85068 7.36711 8.91177 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030867 B = 0.001890 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.895877 B =14813.273669 C =15664.839658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.092 4.092 11 C 0.078 3.922 12 O -0.348 6.348 13 C 0.505 3.495 14 O -0.547 6.547 15 C -0.172 4.172 16 C -0.030 4.030 17 C -0.187 4.187 18 C 0.200 3.800 19 N -0.561 5.561 20 C 0.080 3.920 21 C -0.118 4.118 22 C -0.146 4.146 23 C 0.499 3.501 24 O -0.553 6.553 25 C -0.158 4.158 26 C -0.024 4.024 27 H 0.264 0.736 28 H -0.004 1.004 29 H -0.004 1.004 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.127 0.873 42 H 0.175 0.825 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.410 -30.216 -0.634 37.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.013 4.013 10 C -0.129 4.129 11 C 0.004 3.996 12 O -0.264 6.264 13 C 0.352 3.648 14 O -0.439 6.439 15 C -0.174 4.174 16 C -0.049 4.049 17 C -0.207 4.207 18 C 0.104 3.896 19 N -0.282 5.282 20 C -0.040 4.040 21 C -0.156 4.156 22 C -0.185 4.185 23 C 0.291 3.709 24 O -0.432 6.432 25 C -0.178 4.178 26 C -0.043 4.043 27 H 0.073 0.927 28 H 0.014 0.986 29 H 0.014 0.986 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.149 0.851 35 H 0.167 0.833 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.146 0.854 40 H 0.135 0.865 41 H 0.145 0.855 42 H 0.193 0.807 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 21.355 -30.335 -0.567 37.102 hybrid contribution -1.066 1.142 0.034 1.562 sum 20.289 -29.193 -0.533 35.555 Atomic orbital electron populations 1.70112 1.07941 1.27898 1.51484 1.26046 0.95805 1.03633 0.94632 0.85361 0.78648 0.77996 0.78511 1.19731 1.20936 1.18393 1.21623 0.93816 0.91731 1.50794 0.91438 1.18952 0.94333 0.92605 0.95426 1.21453 0.98699 0.89943 1.02811 1.23183 0.91044 0.83586 1.01784 1.86507 1.41491 1.14825 1.83608 1.21643 0.87248 0.84024 0.71866 1.90809 1.17819 1.87237 1.48077 1.19098 0.93953 0.89992 1.14385 1.21107 1.00697 0.90159 0.92974 1.21477 0.92247 1.00560 1.06397 1.18214 0.89456 0.87698 0.94254 1.46147 1.09872 1.04806 1.67380 1.22796 0.75070 1.01111 1.05034 1.22692 0.98939 0.90588 1.03336 1.22435 0.91781 0.97978 1.06331 1.22239 0.91031 0.84034 0.73629 1.90634 1.22642 1.80299 1.49592 1.21048 1.02089 0.88615 1.06032 1.21512 0.90539 1.00954 0.91306 0.92734 0.98563 0.98582 0.91176 0.91139 0.92006 0.92054 0.85150 0.83303 0.87521 0.87788 0.88819 0.85412 0.86530 0.85482 0.80735 0.82348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.09 -3.83 5.53 30.59 0.17 -3.66 16 11 C 0.08 3.01 5.48 71.98 0.39 3.40 16 12 O -0.35 -12.05 9.46 -56.71 -0.54 -12.59 16 13 C 0.50 17.37 7.89 70.25 0.55 17.93 16 14 O -0.55 -22.21 16.13 19.80 0.32 -21.89 16 15 C -0.17 -4.69 5.87 -20.09 -0.12 -4.81 16 16 C -0.03 -0.81 9.58 22.51 0.22 -0.59 16 17 C -0.19 -4.47 9.26 22.35 0.21 -4.26 16 18 C 0.20 3.64 6.60 38.37 0.25 3.90 16 19 N -0.56 -7.07 3.12 -627.66 -1.96 -9.03 16 20 C 0.08 0.16 6.24 86.83 0.54 0.70 16 21 C -0.12 0.22 7.18 31.65 0.23 0.44 16 22 C -0.15 -0.56 6.86 30.59 0.21 -0.35 16 23 C 0.50 7.64 7.92 87.90 0.70 8.33 16 24 O -0.55 -13.80 14.79 -3.04 -0.04 -13.85 16 25 C -0.16 -2.30 9.38 22.35 0.21 -2.10 16 26 C -0.02 -0.49 9.60 22.51 0.22 -0.27 16 27 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 28 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 31 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.13 3.62 7.64 -2.91 -0.02 3.59 16 35 H 0.15 3.97 5.23 -2.91 -0.02 3.96 16 36 H 0.11 -0.06 7.69 -2.38 -0.02 -0.07 16 37 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.09 -0.23 8.14 -2.39 -0.02 -0.24 16 39 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 40 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 41 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.18 1.11 6.99 -2.91 -0.02 1.08 16 43 H 0.16 2.77 7.60 -2.91 -0.02 2.75 16 Total: -1.00 -79.45 365.34 5.72 -73.73 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.02 Total: 4.74 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 4.62 Total: -10.14 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -1.67 Total: -66.10 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -0.26 Total: -48.33 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -79.45 5.72 -73.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752627698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.209 kcal (2) G-P(sol) polarization free energy of solvation -79.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds