Wall clock time and date at job start Tue Mar 31 2020 11:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 115.55325 * 2 1 4 4 C 1.50704 * 109.47148 * 279.79506 * 3 2 1 5 5 O 1.20826 * 120.00015 * 356.69078 * 4 3 2 6 6 O 1.34235 * 119.99761 * 176.69609 * 4 3 2 7 7 C 1.45202 * 116.99333 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.46651 * 180.02562 * 7 6 4 9 9 O 1.21286 * 120.00217 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00227 * 180.02562 * 8 7 6 11 11 C 1.39243 * 120.00340 * 185.19380 * 10 8 7 12 12 C 1.39474 * 119.83012 * 214.00884 * 11 10 8 13 13 C 1.36384 * 120.16676 * 179.75439 * 12 11 10 14 14 C 1.40869 * 119.82236 * 0.51579 * 13 12 11 15 15 C 1.41159 * 120.15938 * 179.71310 * 14 13 12 16 16 H 1.08004 * 120.00125 * 204.97084 * 15 14 13 17 17 C 1.39902 * 119.99808 * 24.97486 * 15 14 13 18 18 N 1.30875 * 120.00259 * 16.69088 * 17 15 14 19 19 Si 1.86798 * 119.99904 * 196.68509 * 17 15 14 20 20 H 1.48496 * 109.47284 * 60.00007 * 19 17 15 21 21 H 1.48502 * 109.47393 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47482 * 300.00061 * 19 17 15 23 23 C 1.40863 * 119.67723 * 359.73942 * 14 13 12 24 24 C 1.36378 * 119.82900 * 359.97438 * 23 14 13 25 25 C 1.53004 * 117.51847 * 145.70378 * 2 1 3 26 26 C 1.53002 * 117.49665 * 214.33507 * 2 1 3 27 27 H 1.09007 * 109.46853 * 64.82092 * 1 2 3 28 28 H 1.08993 * 109.47154 * 184.81752 * 1 2 3 29 29 H 1.08998 * 109.47234 * 304.82525 * 1 2 3 30 30 H 1.08999 * 109.47516 * 159.79118 * 3 2 1 31 31 H 1.09006 * 109.46830 * 39.78872 * 3 2 1 32 32 H 1.08994 * 109.47406 * 299.99711 * 7 6 4 33 33 H 1.08996 * 109.46957 * 60.00766 * 7 6 4 34 34 H 0.97001 * 119.99897 * 5.18491 * 10 8 7 35 35 H 1.07997 * 119.91807 * 0.02562 * 12 11 10 36 36 H 1.07995 * 120.08914 * 180.24903 * 13 12 11 37 37 H 0.96999 * 120.00222 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.08834 * 179.97438 * 23 14 13 39 39 H 1.08002 * 119.91813 * 179.97438 * 24 23 14 40 40 H 1.08992 * 117.49715 * 214.96946 * 25 2 1 41 41 H 1.09002 * 117.49731 * 359.97438 * 25 2 1 42 42 H 1.08996 * 117.50082 * 359.97031 * 26 2 1 43 43 H 1.09004 * 117.49831 * 145.00379 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.1885 1.9378 -1.4001 5 8 1.7634 1.2726 -2.3148 6 8 2.6597 3.1734 -1.6310 7 6 2.6280 3.6449 -3.0040 8 6 3.1932 5.0404 -3.0689 9 8 3.5846 5.5839 -2.0577 10 7 3.2637 5.6847 -4.2506 11 6 3.8836 6.9290 -4.3293 12 6 3.4041 7.8878 -5.2215 13 6 4.0030 9.1106 -5.3007 14 6 5.1153 9.4000 -4.4862 15 6 5.7443 10.6611 -4.5667 16 1 6.7809 10.7667 -4.2827 17 6 5.0247 11.7743 -5.0142 18 7 3.7169 11.7384 -5.0466 19 14 5.9308 13.3121 -5.5654 20 1 6.8226 12.9794 -6.7053 21 1 4.9474 14.3408 -5.9896 22 1 6.7427 13.8388 -4.4392 23 6 5.5971 8.4246 -3.5914 24 6 4.9842 7.2084 -3.5192 25 6 2.2369 -1.1210 0.7646 26 6 2.2364 -1.1207 -0.7655 27 1 -0.3633 0.4373 -0.9301 28 1 -0.3633 -1.0240 0.0863 29 1 -0.3633 0.5869 0.8436 30 1 3.2167 1.2922 0.3550 31 1 1.6342 2.0487 0.6577 32 1 3.2255 2.9820 -3.6297 33 1 1.5985 3.6525 -3.3618 34 1 2.8827 5.2815 -5.0463 35 1 2.5537 7.6630 -5.8481 36 1 3.6281 9.8535 -5.9891 37 1 3.2180 12.5104 -5.3566 38 1 6.4496 8.6392 -2.9641 39 1 5.3526 6.4593 -2.8340 40 1 3.1720 -0.8751 1.2676 41 1 1.6119 -1.8586 1.2682 42 1 1.6112 -1.8582 -1.2687 43 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758829356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:24 Heat of formation + Delta-G solvation = -78.152767 kcal Electronic energy + Delta-G solvation = -24938.162469 eV Core-core repulsion = 21142.020696 eV Total energy + Delta-G solvation = -3796.141773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.84755 -39.60749 -38.35579 -37.27430 -36.23581 -34.49763 -33.05247 -30.76105 -29.73107 -29.42775 -28.65193 -27.80076 -24.80864 -22.77636 -22.13871 -21.52866 -20.80866 -19.80850 -19.26460 -17.85174 -17.47270 -17.25339 -16.91676 -16.16359 -15.91619 -15.51821 -15.21618 -15.10185 -14.49433 -14.01178 -13.89507 -13.46880 -13.26974 -12.97597 -12.71183 -12.60233 -12.56387 -12.31870 -12.12208 -11.88355 -11.83588 -11.61127 -11.38195 -11.12908 -11.09380 -10.86072 -10.84575 -10.77015 -10.43852 -10.06964 -10.03889 -9.63853 -9.45052 -9.17179 -8.96246 -7.58639 -7.03864 -6.78022 -4.34120 2.04317 2.21623 2.48027 2.95214 3.04227 3.06421 3.08017 3.29802 3.41341 3.76886 3.90215 4.20971 4.37337 4.53822 4.58354 4.59437 4.74489 4.92415 5.01792 5.02857 5.13581 5.21480 5.33010 5.47849 5.54618 5.63236 5.65952 5.66844 5.82178 5.92533 6.15508 6.23712 6.37461 6.70717 6.87161 7.00087 7.13246 7.23669 7.54441 7.57481 7.67195 7.83397 7.99005 8.20407 8.23685 8.54234 8.65596 8.84364 8.94654 10.13896 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.045974 B = 0.001946 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.890117 B =14383.623396 C =14545.531661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.123 4.123 3 C -0.077 4.077 4 C 0.461 3.539 5 O -0.502 6.502 6 O -0.332 6.332 7 C 0.053 3.947 8 C 0.496 3.504 9 O -0.509 6.509 10 N -0.644 5.644 11 C -0.011 4.011 12 C -0.110 4.110 13 C -0.154 4.154 14 C 0.106 3.894 15 C -0.456 4.456 16 H 0.079 0.921 17 C 0.074 3.926 18 N -0.791 5.791 19 Si 0.911 3.089 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.216 4.216 24 C -0.074 4.074 25 C -0.172 4.172 26 C -0.156 4.156 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.397 0.603 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.282 0.718 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 -19.543 5.347 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.123 4.123 3 C -0.114 4.114 4 C 0.303 3.697 5 O -0.390 6.390 6 O -0.247 6.247 7 C -0.025 4.025 8 C 0.281 3.719 9 O -0.384 6.384 10 N -0.289 5.289 11 C -0.103 4.103 12 C -0.130 4.130 13 C -0.174 4.174 14 C 0.103 3.897 15 C -0.485 4.485 16 H 0.097 0.903 17 C -0.144 4.144 18 N -0.417 5.417 19 Si 0.735 3.265 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.236 4.236 24 C -0.094 4.094 25 C -0.209 4.209 26 C -0.193 4.193 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.230 0.770 35 H 0.109 0.891 36 H 0.141 0.859 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.379 -19.194 5.747 20.746 hybrid contribution -0.004 0.543 -0.809 0.974 sum -5.383 -18.651 4.938 20.031 Atomic orbital electron populations 1.21317 0.91440 1.02091 1.02295 1.21140 0.95241 0.89128 1.06813 1.20906 1.04095 0.95444 0.90968 1.23789 0.74026 0.79287 0.92582 1.90662 1.43048 1.59282 1.45963 1.86577 1.75552 1.32257 1.30298 1.22698 1.03379 0.94659 0.81758 1.19947 0.80835 0.86736 0.84359 1.90750 1.46834 1.66971 1.33873 1.42793 1.57466 1.19485 1.09165 1.17101 0.99138 0.85834 1.08187 1.20217 0.99221 0.93695 0.99906 1.20920 0.99737 0.94832 1.01901 1.17680 0.91177 0.92347 0.88462 1.19553 0.98508 0.92367 1.38047 0.90313 1.25947 0.94688 1.00755 0.93049 1.69831 1.06939 1.31318 1.33571 0.86324 0.80028 0.80014 0.80120 1.18787 1.20326 1.18961 1.20646 1.04296 0.95296 1.03344 1.20235 0.93907 0.97142 0.98137 1.23191 1.02189 1.00395 0.95076 1.22928 1.02271 1.00479 0.93591 0.91722 0.92227 0.92103 0.87327 0.86976 0.88419 0.88472 0.76979 0.89066 0.85924 0.90728 0.88597 0.88105 0.88556 0.88452 0.88591 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.70 37.16 0.36 -0.50 16 2 C -0.12 -0.99 1.61 -154.51 -0.25 -1.24 16 3 C -0.08 -0.65 5.75 -27.88 -0.16 -0.81 16 4 C 0.46 5.46 7.86 36.01 0.28 5.74 16 5 O -0.50 -6.67 14.85 -18.75 -0.28 -6.95 16 6 O -0.33 -4.67 9.76 -45.92 -0.45 -5.12 16 7 C 0.05 0.69 5.95 36.01 0.21 0.90 16 8 C 0.50 8.71 7.63 -10.99 -0.08 8.63 16 9 O -0.51 -11.30 14.22 -14.11 -0.20 -11.50 16 10 N -0.64 -11.13 5.31 -9.74 -0.05 -11.18 16 11 C -0.01 -0.24 6.27 -83.57 -0.52 -0.76 16 12 C -0.11 -2.49 9.89 -39.79 -0.39 -2.88 16 13 C -0.15 -3.92 8.64 -39.25 -0.34 -4.25 16 14 C 0.11 2.82 5.57 -106.80 -0.60 2.23 16 15 C -0.46 -11.97 9.04 -37.85 -0.34 -12.31 16 16 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 17 C 0.07 1.82 5.16 -17.34 -0.09 1.73 16 18 N -0.79 -20.20 10.91 55.55 0.61 -19.60 16 19 Si 0.91 18.40 29.59 -169.99 -5.03 13.37 16 20 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 C -0.22 -5.46 9.74 -39.26 -0.38 -5.84 16 24 C -0.07 -1.78 8.57 -39.79 -0.34 -2.12 16 25 C -0.17 -1.11 9.87 -26.72 -0.26 -1.38 16 26 C -0.16 -1.26 8.98 -26.73 -0.24 -1.50 16 27 H 0.06 0.58 7.94 -51.92 -0.41 0.17 16 28 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.11 0.78 7.95 -51.93 -0.41 0.37 16 31 H 0.11 0.82 8.13 -51.93 -0.42 0.39 16 32 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 33 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 34 H 0.40 5.18 8.81 -40.82 -0.36 4.82 16 35 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.12 3.18 6.14 -52.49 -0.32 2.86 16 37 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 38 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 39 H 0.10 2.38 6.46 -52.49 -0.34 2.04 16 40 H 0.10 0.55 8.08 -51.93 -0.42 0.13 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -31.72 368.93 -9.03 -40.75 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.04 Total: 9.04 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -3.15 Total: -14.37 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.55 Total: -30.78 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.93 Total: -23.57 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.72 -9.03 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758829356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.406 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds