Wall clock time and date at job start Tue Mar 31 2020 11:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 115.55325 * 2 1 4 4 C 1.50704 * 109.47148 * 279.79506 * 3 2 1 5 5 O 1.20826 * 120.00015 * 356.69078 * 4 3 2 6 6 O 1.34235 * 119.99761 * 176.69609 * 4 3 2 7 7 C 1.45202 * 116.99333 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.46651 * 180.02562 * 7 6 4 9 9 O 1.21286 * 120.00217 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00227 * 180.02562 * 8 7 6 11 11 C 1.39243 * 120.00340 * 185.19380 * 10 8 7 12 12 C 1.39474 * 119.83012 * 214.00884 * 11 10 8 13 13 C 1.36384 * 120.16676 * 179.75439 * 12 11 10 14 14 C 1.40869 * 119.82236 * 0.51579 * 13 12 11 15 15 C 1.41159 * 120.15938 * 179.71310 * 14 13 12 16 16 H 1.08004 * 120.00125 * 204.97084 * 15 14 13 17 17 C 1.39902 * 119.99808 * 24.97486 * 15 14 13 18 18 N 1.30875 * 120.00259 * 16.69088 * 17 15 14 19 19 Si 1.86798 * 119.99904 * 196.68509 * 17 15 14 20 20 H 1.48496 * 109.47284 * 60.00007 * 19 17 15 21 21 H 1.48502 * 109.47393 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47482 * 300.00061 * 19 17 15 23 23 C 1.40863 * 119.67723 * 359.73942 * 14 13 12 24 24 C 1.36378 * 119.82900 * 359.97438 * 23 14 13 25 25 C 1.53004 * 117.51847 * 145.70378 * 2 1 3 26 26 C 1.53002 * 117.49665 * 214.33507 * 2 1 3 27 27 H 1.09007 * 109.46853 * 64.82092 * 1 2 3 28 28 H 1.08993 * 109.47154 * 184.81752 * 1 2 3 29 29 H 1.08998 * 109.47234 * 304.82525 * 1 2 3 30 30 H 1.08999 * 109.47516 * 159.79118 * 3 2 1 31 31 H 1.09006 * 109.46830 * 39.78872 * 3 2 1 32 32 H 1.08994 * 109.47406 * 299.99711 * 7 6 4 33 33 H 1.08996 * 109.46957 * 60.00766 * 7 6 4 34 34 H 0.97001 * 119.99897 * 5.18491 * 10 8 7 35 35 H 1.07997 * 119.91807 * 0.02562 * 12 11 10 36 36 H 1.07995 * 120.08914 * 180.24903 * 13 12 11 37 37 H 0.96999 * 120.00222 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.08834 * 179.97438 * 23 14 13 39 39 H 1.08002 * 119.91813 * 179.97438 * 24 23 14 40 40 H 1.08992 * 117.49715 * 214.96946 * 25 2 1 41 41 H 1.09002 * 117.49731 * 359.97438 * 25 2 1 42 42 H 1.08996 * 117.50082 * 359.97031 * 26 2 1 43 43 H 1.09004 * 117.49831 * 145.00379 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.1885 1.9378 -1.4001 5 8 1.7634 1.2726 -2.3148 6 8 2.6597 3.1734 -1.6310 7 6 2.6280 3.6449 -3.0040 8 6 3.1932 5.0404 -3.0689 9 8 3.5846 5.5839 -2.0577 10 7 3.2637 5.6847 -4.2506 11 6 3.8836 6.9290 -4.3293 12 6 3.4041 7.8878 -5.2215 13 6 4.0030 9.1106 -5.3007 14 6 5.1153 9.4000 -4.4862 15 6 5.7443 10.6611 -4.5667 16 1 6.7809 10.7667 -4.2827 17 6 5.0247 11.7743 -5.0142 18 7 3.7169 11.7384 -5.0466 19 14 5.9308 13.3121 -5.5654 20 1 6.8226 12.9794 -6.7053 21 1 4.9474 14.3408 -5.9896 22 1 6.7427 13.8388 -4.4392 23 6 5.5971 8.4246 -3.5914 24 6 4.9842 7.2084 -3.5192 25 6 2.2369 -1.1210 0.7646 26 6 2.2364 -1.1207 -0.7655 27 1 -0.3633 0.4373 -0.9301 28 1 -0.3633 -1.0240 0.0863 29 1 -0.3633 0.5869 0.8436 30 1 3.2167 1.2922 0.3550 31 1 1.6342 2.0487 0.6577 32 1 3.2255 2.9820 -3.6297 33 1 1.5985 3.6525 -3.3618 34 1 2.8827 5.2815 -5.0463 35 1 2.5537 7.6630 -5.8481 36 1 3.6281 9.8535 -5.9891 37 1 3.2180 12.5104 -5.3566 38 1 6.4496 8.6392 -2.9641 39 1 5.3526 6.4593 -2.8340 40 1 3.1720 -0.8751 1.2676 41 1 1.6119 -1.8586 1.2682 42 1 1.6112 -1.8582 -1.2687 43 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758829356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:23 Heat of formation + Delta-G solvation = -94.772213 kcal Electronic energy + Delta-G solvation = -24938.883143 eV Core-core repulsion = 21142.020696 eV Total energy + Delta-G solvation = -3796.862446 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.85813 -41.05604 -39.28053 -38.82034 -37.26022 -36.21335 -34.81751 -31.78703 -31.45818 -30.93774 -29.59880 -28.85185 -26.57326 -23.67139 -23.32115 -22.89408 -22.38972 -21.36591 -19.96801 -19.30949 -18.83650 -18.68500 -17.90939 -17.68910 -17.01835 -16.97968 -16.37018 -16.10883 -15.73560 -15.36267 -15.20774 -14.94104 -14.48390 -14.19552 -14.00888 -13.94771 -13.69943 -13.59739 -13.28502 -13.22342 -12.99134 -12.86853 -12.76742 -12.48115 -12.36186 -12.21666 -11.89129 -11.79733 -11.71936 -11.46531 -11.20009 -11.06766 -10.89908 -10.69968 -10.62807 -9.49577 -8.89556 -8.62150 -6.29629 0.74011 1.12007 1.14412 1.24384 1.39086 1.42727 1.51763 1.70348 2.21422 2.38498 2.73122 2.92949 3.57472 3.59296 3.71392 3.77684 3.85052 3.99857 4.02713 4.04685 4.16767 4.37989 4.46617 4.54504 4.62582 4.82029 4.90651 4.92510 4.96567 5.04839 5.08023 5.09525 5.12089 5.27920 5.28117 5.33188 5.34872 5.40191 5.63690 5.85625 5.99636 6.07085 6.34306 6.57381 6.64017 6.70347 6.91183 6.96054 7.27603 8.31559 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.045974 B = 0.001946 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.890117 B =14383.623396 C =14545.531661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.134 4.134 3 C -0.076 4.076 4 C 0.461 3.539 5 O -0.518 6.518 6 O -0.353 6.353 7 C 0.061 3.939 8 C 0.499 3.501 9 O -0.559 6.559 10 N -0.635 5.635 11 C 0.004 3.996 12 C -0.108 4.108 13 C -0.173 4.173 14 C 0.075 3.925 15 C -0.493 4.493 16 H 0.076 0.924 17 C 0.034 3.966 18 N -0.822 5.822 19 Si 0.985 3.015 20 H -0.258 1.258 21 H -0.266 1.266 22 H -0.262 1.262 23 C -0.234 4.234 24 C -0.086 4.086 25 C -0.152 4.152 26 C -0.170 4.170 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.421 0.579 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.290 0.710 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.159 -20.854 5.347 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.135 4.135 3 C -0.113 4.113 4 C 0.305 3.695 5 O -0.407 6.407 6 O -0.269 6.269 7 C -0.016 4.016 8 C 0.286 3.714 9 O -0.437 6.437 10 N -0.282 5.282 11 C -0.089 4.089 12 C -0.128 4.128 13 C -0.193 4.193 14 C 0.072 3.928 15 C -0.523 4.523 16 H 0.094 0.906 17 C -0.181 4.181 18 N -0.448 5.448 19 Si 0.806 3.194 20 H -0.183 1.183 21 H -0.190 1.190 22 H -0.187 1.187 23 C -0.254 4.254 24 C -0.106 4.106 25 C -0.189 4.189 26 C -0.207 4.207 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.259 0.741 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.231 -20.557 5.724 22.230 hybrid contribution 0.185 0.771 -0.760 1.098 sum -6.046 -19.786 4.964 21.276 Atomic orbital electron populations 1.21309 0.91277 1.02713 1.01725 1.21225 0.95476 0.89014 1.07736 1.21071 1.05338 0.95816 0.89073 1.24409 0.73102 0.78300 0.93647 1.90653 1.43840 1.59414 1.46765 1.86581 1.76132 1.33506 1.30658 1.22649 1.04884 0.91751 0.82290 1.20705 0.79361 0.88043 0.83305 1.90736 1.48882 1.68471 1.35606 1.42667 1.56968 1.17934 1.10594 1.17154 0.98006 0.87423 1.06322 1.20493 0.99640 0.92632 1.00028 1.20946 1.00192 0.95964 1.02163 1.18013 0.92291 0.93083 0.89405 1.19789 0.98777 0.93358 1.40335 0.90617 1.26784 0.95374 1.03611 0.92335 1.69871 1.08255 1.32708 1.33984 0.85204 0.78775 0.75858 0.79581 1.18269 1.19036 1.18662 1.20778 1.04863 0.96056 1.03716 1.20354 0.94759 0.96756 0.98730 1.23267 1.02423 0.99286 0.93885 1.22930 1.01970 1.00874 0.94936 0.93568 0.91336 0.91088 0.85860 0.85626 0.85862 0.85883 0.74129 0.85575 0.86939 0.89927 0.88685 0.88065 0.87499 0.87175 0.88736 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.70 71.98 0.70 -0.83 16 2 C -0.13 -1.90 1.61 -52.18 -0.08 -1.98 16 3 C -0.08 -1.15 5.75 29.85 0.17 -0.98 16 4 C 0.46 10.17 7.86 71.24 0.56 10.73 16 5 O -0.52 -12.93 14.85 21.96 0.33 -12.61 16 6 O -0.35 -9.34 9.76 -45.11 -0.44 -9.78 16 7 C 0.06 1.45 5.95 71.24 0.42 1.88 16 8 C 0.50 16.71 7.63 87.66 0.67 17.38 16 9 O -0.56 -24.64 14.22 15.75 0.22 -24.42 16 10 N -0.63 -20.62 5.31 -303.11 -1.61 -22.23 16 11 C 0.00 0.18 6.27 38.56 0.24 0.42 16 12 C -0.11 -4.79 9.89 22.13 0.22 -4.57 16 13 C -0.17 -8.93 8.64 22.48 0.19 -8.74 16 14 C 0.07 4.11 5.57 -21.28 -0.12 3.99 16 15 C -0.49 -26.86 9.04 23.39 0.21 -26.65 16 16 H 0.08 3.98 7.90 -2.91 -0.02 3.96 16 17 C 0.03 1.71 5.16 85.24 0.44 2.15 16 18 N -0.82 -42.65 10.91 21.82 0.24 -42.41 16 19 Si 0.99 37.91 29.59 68.60 2.03 39.94 16 20 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 21 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 22 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 23 C -0.23 -12.28 9.74 22.48 0.22 -12.06 16 24 C -0.09 -4.18 8.57 22.14 0.19 -3.99 16 25 C -0.15 -1.59 9.87 30.60 0.30 -1.29 16 26 C -0.17 -2.52 8.98 30.60 0.27 -2.24 16 27 H 0.05 0.78 7.94 -2.38 -0.02 0.77 16 28 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.12 1.50 7.95 -2.39 -0.02 1.48 16 31 H 0.13 1.56 8.13 -2.38 -0.02 1.54 16 32 H 0.12 2.35 8.13 -2.39 -0.02 2.33 16 33 H 0.12 2.33 8.13 -2.39 -0.02 2.31 16 34 H 0.42 9.66 8.81 -92.71 -0.82 8.84 16 35 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 36 H 0.11 5.98 6.14 -2.91 -0.02 5.96 16 37 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 38 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.10 4.85 6.46 -2.91 -0.02 4.84 16 40 H 0.11 0.91 8.08 -2.39 -0.02 0.89 16 41 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -70.74 368.93 5.60 -65.14 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: 0.22 Total: 33.13 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 4.61 Total: -26.77 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -1.37 Total: -64.64 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: 0.11 Total: -46.81 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -70.74 5.60 -65.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758829356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.630 kcal (2) G-P(sol) polarization free energy of solvation -70.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds