Wall clock time and date at job start Tue Mar 31 2020 11:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86799 * 119.99780 * 2 1 4 4 H 1.48507 * 109.47003 * 239.99803 * 3 2 1 5 5 H 1.48506 * 109.47458 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47166 * 119.99948 * 3 2 1 7 7 C 1.38651 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99816 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00134 * 185.06317 * 9 7 2 11 11 C 1.38901 * 120.06519 * 354.48612 * 10 9 7 12 12 C 1.38083 * 119.92675 * 179.97438 * 11 10 9 13 13 C 1.38319 * 120.07020 * 359.74333 * 12 11 10 14 14 C 1.38280 * 120.13772 * 0.51346 * 13 12 11 15 15 C 1.50705 * 119.96649 * 179.76238 * 14 13 12 16 16 C 1.50695 * 109.47075 * 269.72553 * 15 14 13 17 17 O 1.21282 * 120.00688 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99985 * 180.02562 * 16 15 14 19 19 C 1.46504 * 120.00212 * 180.02562 * 18 16 15 20 20 H 1.08992 * 110.34447 * 35.82748 * 19 18 16 21 21 C 1.51101 * 110.38181 * 273.54544 * 19 18 16 22 22 C 1.30527 * 111.10523 * 257.86458 * 21 19 18 23 23 C 1.51107 * 111.10088 * 359.61996 * 22 21 19 24 24 H 1.09000 * 110.52127 * 225.01502 * 23 22 21 25 25 C 1.52997 * 110.29369 * 102.72524 * 23 22 21 26 26 O 1.42907 * 109.47189 * 69.68445 * 25 23 22 27 27 C 1.54631 * 110.38739 * 158.24108 * 19 18 16 28 28 C 1.38121 * 120.06866 * 359.49134 * 14 13 12 29 29 H 0.97004 * 120.00135 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.04213 * 0.02562 * 11 10 9 31 31 H 1.08000 * 119.96584 * 180.02562 * 12 11 10 32 32 H 1.08002 * 119.93345 * 180.27660 * 13 12 11 33 33 H 1.08999 * 109.47163 * 149.72810 * 15 14 13 34 34 H 1.08992 * 109.46968 * 29.72313 * 15 14 13 35 35 H 0.96997 * 119.99963 * 359.97438 * 18 16 15 36 36 H 1.08006 * 124.45365 * 77.60593 * 21 19 18 37 37 H 1.08003 * 124.45014 * 179.73915 * 22 21 19 38 38 H 1.08995 * 109.47089 * 189.68759 * 25 23 22 39 39 H 1.09000 * 109.47133 * 309.68953 * 25 23 22 40 40 H 0.96694 * 113.99969 * 180.02562 * 26 25 23 41 41 H 1.08993 * 111.03682 * 212.20955 * 27 19 18 42 42 H 1.08991 * 111.03753 * 336.14655 * 27 19 18 43 43 H 1.08001 * 120.03680 * 180.23407 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7466 -0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0700 -3.5045 0.1088 11 6 3.4574 -3.4392 0.0958 12 6 4.2026 -4.5965 0.2056 13 6 3.5688 -5.8193 0.3337 14 6 2.1878 -5.8881 0.3417 15 6 1.5013 -7.2230 0.4761 16 6 1.2654 -7.8066 -0.8931 17 8 1.6193 -7.1984 -1.8809 18 7 0.6601 -9.0041 -1.0200 19 6 0.4312 -9.5719 -2.3510 20 1 1.2593 -9.3257 -3.0155 21 6 -0.8716 -9.0635 -2.9231 22 6 -1.8121 -9.9630 -2.8220 23 6 -1.2908 -11.2246 -2.1741 24 1 -1.6337 -12.1040 -2.7193 25 6 -1.7403 -11.2957 -0.7133 26 8 -3.1501 -11.5229 -0.6593 27 6 0.2486 -11.1046 -2.2588 28 6 1.4368 -4.7341 0.2321 29 1 -0.4850 0.8401 -0.0004 30 1 3.9529 -2.4843 0.0008 31 1 5.2814 -4.5465 0.1960 32 1 4.1539 -6.7227 0.4240 33 1 0.5461 -7.0908 0.9842 34 1 2.1306 -7.8984 1.0554 35 1 0.3767 -9.4905 -0.2300 36 1 -1.0081 -8.0829 -3.3549 37 1 -2.8288 -9.8244 -3.1591 38 1 -1.2211 -12.1130 -0.2128 39 1 -1.5044 -10.3557 -0.2145 40 1 -3.5053 -11.5789 0.2383 41 1 0.6310 -11.5986 -3.1519 42 1 0.7220 -11.5017 -1.3609 43 1 0.3582 -4.7880 0.2422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760625880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:13 Heat of formation + Delta-G solvation = -68.372503 kcal Electronic energy + Delta-G solvation = -25447.831207 eV Core-core repulsion = 21652.113538 eV Total energy + Delta-G solvation = -3795.717669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45391 -39.18762 -38.43028 -36.69439 -36.30431 -33.63450 -32.33775 -31.90871 -30.12877 -29.22606 -28.55333 -26.81640 -25.20869 -24.34756 -21.73313 -21.35895 -20.81651 -20.23446 -18.86543 -17.77578 -17.65898 -17.21095 -16.86963 -16.36835 -15.85091 -15.30948 -14.99482 -14.86762 -14.57402 -14.34547 -14.21737 -13.69769 -13.40117 -13.35913 -12.75655 -12.64630 -12.39046 -12.32608 -12.22683 -11.85696 -11.77348 -11.53956 -11.44485 -11.27690 -11.20903 -10.78256 -10.73490 -10.57222 -10.42091 -10.37797 -9.83510 -9.29861 -9.25462 -9.13452 -8.77930 -8.00423 -7.15796 -6.38659 -3.97731 1.92108 2.18485 2.45630 2.80820 3.16897 3.17542 3.20607 3.32558 3.74195 4.01626 4.18256 4.41245 4.58719 4.63912 4.78201 4.93208 4.95618 5.05555 5.12687 5.16043 5.22457 5.28581 5.33585 5.45918 5.53030 5.61173 5.61964 5.71702 5.80221 5.89968 5.98821 6.23421 6.31033 6.39647 6.41013 6.62528 6.71791 6.97822 7.12797 7.22995 7.32529 7.42245 7.46899 7.50355 7.89059 8.06397 8.35246 9.06990 9.78358 10.79628 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.002515 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.608396 B =11128.938820 C =11844.373532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.231 4.231 12 C -0.075 4.075 13 C -0.197 4.197 14 C -0.032 4.032 15 C -0.094 4.094 16 C 0.514 3.486 17 O -0.515 6.515 18 N -0.730 5.730 19 C 0.163 3.837 20 H 0.095 0.905 21 C -0.169 4.169 22 C -0.142 4.142 23 C -0.072 4.072 24 H 0.087 0.913 25 C 0.086 3.914 26 O -0.571 6.571 27 C -0.125 4.125 28 C -0.175 4.175 29 H 0.269 0.731 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.394 0.606 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.380 0.620 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 -23.854 0.786 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.102 3.898 11 C -0.250 4.250 12 C -0.093 4.093 13 C -0.216 4.216 14 C -0.033 4.033 15 C -0.134 4.134 16 C 0.301 3.699 17 O -0.389 6.389 18 N -0.384 5.384 19 C 0.059 3.941 20 H 0.113 0.887 21 C -0.188 4.188 22 C -0.161 4.161 23 C -0.091 4.091 24 H 0.106 0.894 25 C 0.008 3.992 26 O -0.377 6.377 27 C -0.163 4.163 28 C -0.194 4.194 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.229 0.771 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.227 0.773 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.755 -23.153 -0.612 23.173 hybrid contribution 0.229 0.668 0.934 1.171 sum -0.526 -22.485 0.322 22.493 Atomic orbital electron populations 1.70035 1.05932 1.27640 1.46427 1.25268 0.95828 0.98757 0.96674 0.85795 0.78684 0.79870 0.79144 1.19539 1.20321 1.19543 1.21267 0.91747 0.80886 1.52825 0.89193 1.83976 1.34216 1.11374 1.78785 1.19273 0.90245 0.87962 0.92361 1.21175 0.93837 0.98968 1.11022 1.20675 0.98353 0.92342 0.97950 1.20339 0.93286 0.96893 1.11053 1.18648 0.93219 0.91740 0.99707 1.20595 1.02525 0.95917 0.94349 1.20790 0.76779 0.80360 0.91982 1.90760 1.49201 1.59090 1.39804 1.46172 1.62599 1.21580 1.08013 1.20649 0.96955 0.91540 0.84945 0.88663 1.23682 0.95335 0.99934 0.99894 1.23185 0.99085 0.94915 0.98917 1.21041 0.94546 0.98452 0.95043 0.89431 1.22256 0.81780 0.99158 0.96000 1.86485 1.22316 1.95674 1.33190 1.22738 0.94733 0.95130 1.03687 1.19938 0.99031 0.90005 1.10433 0.92067 0.85636 0.87500 0.87971 0.88360 0.88456 0.77108 0.85386 0.85523 0.93411 0.93458 0.77314 0.88959 0.89897 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.98 13.67 55.48 0.76 -25.23 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.39 -11.28 9.49 30.88 0.29 -10.98 16 8 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 9 O -0.18 -5.33 9.76 0.06 0.00 -5.33 16 10 C 0.15 3.94 6.65 -39.11 -0.26 3.68 16 11 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 12 C -0.07 -1.46 10.04 -39.61 -0.40 -1.86 16 13 C -0.20 -3.60 9.70 -39.54 -0.38 -3.98 16 14 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 15 C -0.09 -1.25 5.83 -29.03 -0.17 -1.42 16 16 C 0.51 7.40 7.81 -10.99 -0.09 7.32 16 17 O -0.52 -10.03 15.74 5.56 0.09 -9.95 16 18 N -0.73 -7.43 5.08 -53.90 -0.27 -7.70 16 19 C 0.16 1.65 3.20 -68.03 -0.22 1.43 16 20 H 0.10 1.13 7.65 -51.93 -0.40 0.73 16 21 C -0.17 -1.87 10.39 -35.70 -0.37 -2.25 16 22 C -0.14 -1.36 9.97 -35.69 -0.36 -1.72 16 23 C -0.07 -0.54 3.18 -90.71 -0.29 -0.83 16 24 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 25 C 0.09 0.57 6.31 37.16 0.23 0.80 16 26 O -0.57 -4.40 13.54 -35.23 -0.48 -4.87 16 27 C -0.12 -0.84 6.32 -25.01 -0.16 -0.99 16 28 C -0.17 -3.90 9.65 -39.40 -0.38 -4.28 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 31 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 34 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.39 2.78 7.31 -40.82 -0.30 2.48 16 36 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 38 H 0.05 0.23 8.10 -51.93 -0.42 -0.19 16 39 H 0.05 0.31 6.88 -51.93 -0.36 -0.05 16 40 H 0.38 1.31 9.12 45.56 0.42 1.72 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.42 7.75 -51.93 -0.40 0.02 16 43 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -36.50 364.92 -7.85 -44.35 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.96 Total: 8.02 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -3.45 Total: -20.80 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.48 Total: -32.92 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.39 Total: -20.15 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.50 -7.85 -44.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760625880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.025 kcal (2) G-P(sol) polarization free energy of solvation -36.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds