Wall clock time and date at job start Tue Mar 31 2020 11:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86799 * 119.99780 * 2 1 4 4 H 1.48507 * 109.47003 * 239.99803 * 3 2 1 5 5 H 1.48506 * 109.47458 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47166 * 119.99948 * 3 2 1 7 7 C 1.38651 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99816 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00134 * 185.06317 * 9 7 2 11 11 C 1.38901 * 120.06519 * 354.48612 * 10 9 7 12 12 C 1.38083 * 119.92675 * 179.97438 * 11 10 9 13 13 C 1.38319 * 120.07020 * 359.74333 * 12 11 10 14 14 C 1.38280 * 120.13772 * 0.51346 * 13 12 11 15 15 C 1.50705 * 119.96649 * 179.76238 * 14 13 12 16 16 C 1.50695 * 109.47075 * 269.72553 * 15 14 13 17 17 O 1.21282 * 120.00688 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99985 * 180.02562 * 16 15 14 19 19 C 1.46504 * 120.00212 * 180.02562 * 18 16 15 20 20 H 1.08992 * 110.34447 * 35.82748 * 19 18 16 21 21 C 1.51101 * 110.38181 * 273.54544 * 19 18 16 22 22 C 1.30527 * 111.10523 * 257.86458 * 21 19 18 23 23 C 1.51107 * 111.10088 * 359.61996 * 22 21 19 24 24 H 1.09000 * 110.52127 * 225.01502 * 23 22 21 25 25 C 1.52997 * 110.29369 * 102.72524 * 23 22 21 26 26 O 1.42907 * 109.47189 * 69.68445 * 25 23 22 27 27 C 1.54631 * 110.38739 * 158.24108 * 19 18 16 28 28 C 1.38121 * 120.06866 * 359.49134 * 14 13 12 29 29 H 0.97004 * 120.00135 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.04213 * 0.02562 * 11 10 9 31 31 H 1.08000 * 119.96584 * 180.02562 * 12 11 10 32 32 H 1.08002 * 119.93345 * 180.27660 * 13 12 11 33 33 H 1.08999 * 109.47163 * 149.72810 * 15 14 13 34 34 H 1.08992 * 109.46968 * 29.72313 * 15 14 13 35 35 H 0.96997 * 119.99963 * 359.97438 * 18 16 15 36 36 H 1.08006 * 124.45365 * 77.60593 * 21 19 18 37 37 H 1.08003 * 124.45014 * 179.73915 * 22 21 19 38 38 H 1.08995 * 109.47089 * 189.68759 * 25 23 22 39 39 H 1.09000 * 109.47133 * 309.68953 * 25 23 22 40 40 H 0.96694 * 113.99969 * 180.02562 * 26 25 23 41 41 H 1.08993 * 111.03682 * 212.20955 * 27 19 18 42 42 H 1.08991 * 111.03753 * 336.14655 * 27 19 18 43 43 H 1.08001 * 120.03680 * 180.23407 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7466 -0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0700 -3.5045 0.1088 11 6 3.4574 -3.4392 0.0958 12 6 4.2026 -4.5965 0.2056 13 6 3.5688 -5.8193 0.3337 14 6 2.1878 -5.8881 0.3417 15 6 1.5013 -7.2230 0.4761 16 6 1.2654 -7.8066 -0.8931 17 8 1.6193 -7.1984 -1.8809 18 7 0.6601 -9.0041 -1.0200 19 6 0.4312 -9.5719 -2.3510 20 1 1.2593 -9.3257 -3.0155 21 6 -0.8716 -9.0635 -2.9231 22 6 -1.8121 -9.9630 -2.8220 23 6 -1.2908 -11.2246 -2.1741 24 1 -1.6337 -12.1040 -2.7193 25 6 -1.7403 -11.2957 -0.7133 26 8 -3.1501 -11.5229 -0.6593 27 6 0.2486 -11.1046 -2.2588 28 6 1.4368 -4.7341 0.2321 29 1 -0.4850 0.8401 -0.0004 30 1 3.9529 -2.4843 0.0008 31 1 5.2814 -4.5465 0.1960 32 1 4.1539 -6.7227 0.4240 33 1 0.5461 -7.0908 0.9842 34 1 2.1306 -7.8984 1.0554 35 1 0.3767 -9.4905 -0.2300 36 1 -1.0081 -8.0829 -3.3549 37 1 -2.8288 -9.8244 -3.1591 38 1 -1.2211 -12.1130 -0.2128 39 1 -1.5044 -10.3557 -0.2145 40 1 -3.5053 -11.5789 0.2383 41 1 0.6310 -11.5986 -3.1519 42 1 0.7220 -11.5017 -1.3609 43 1 0.3582 -4.7880 0.2422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760625880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:12 Heat of formation + Delta-G solvation = -96.221098 kcal Electronic energy + Delta-G solvation = -25449.038813 eV Core-core repulsion = 21652.113538 eV Total energy + Delta-G solvation = -3796.925275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42219 -40.71586 -39.64125 -38.14908 -37.17200 -34.64609 -34.33916 -33.38388 -30.93301 -30.78388 -29.55465 -28.04567 -27.20698 -25.04853 -23.31329 -22.88472 -21.61529 -21.48438 -19.64379 -19.50538 -18.81225 -18.41204 -18.01573 -17.30853 -16.81084 -16.73149 -16.46949 -16.12082 -15.78414 -15.60004 -15.48809 -15.26235 -14.83157 -14.61746 -14.33433 -14.00633 -13.62842 -13.32849 -13.25945 -12.95507 -12.84197 -12.74329 -12.50291 -12.45938 -12.39196 -12.21944 -12.16191 -12.12237 -11.92137 -11.21216 -11.06656 -10.81735 -10.78318 -10.14357 -10.08300 -9.62680 -8.97623 -8.47391 -6.16240 0.51834 0.76209 1.12181 1.33109 1.44742 1.50046 1.70673 2.17445 2.35766 2.85900 3.18405 3.25736 3.44450 3.50044 3.80250 3.80791 4.06744 4.10773 4.12011 4.24263 4.32185 4.39429 4.44438 4.50385 4.58492 4.62790 4.64912 4.69843 4.73964 4.81797 4.93349 5.07018 5.07419 5.12420 5.18888 5.31117 5.49823 5.54693 5.65416 5.73039 5.75668 5.78315 6.02366 6.24221 6.59589 6.93692 6.96915 7.33821 7.78870 8.76109 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.002515 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.608396 B =11128.938820 C =11844.373532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.236 6.236 10 C 0.111 3.889 11 C -0.248 4.248 12 C -0.074 4.074 13 C -0.179 4.179 14 C -0.025 4.025 15 C -0.091 4.091 16 C 0.514 3.486 17 O -0.577 6.577 18 N -0.706 5.706 19 C 0.162 3.838 20 H 0.073 0.927 21 C -0.200 4.200 22 C -0.127 4.127 23 C -0.073 4.073 24 H 0.095 0.905 25 C 0.084 3.916 26 O -0.595 6.595 27 C -0.109 4.109 28 C -0.195 4.195 29 H 0.273 0.727 30 H 0.118 0.882 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.119 0.881 34 H 0.148 0.852 35 H 0.414 0.586 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.397 0.603 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.389 -27.459 2.295 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.143 6.143 10 C 0.061 3.939 11 C -0.267 4.267 12 C -0.092 4.092 13 C -0.198 4.198 14 C -0.026 4.026 15 C -0.131 4.131 16 C 0.302 3.698 17 O -0.456 6.456 18 N -0.360 5.360 19 C 0.057 3.943 20 H 0.091 0.909 21 C -0.219 4.219 22 C -0.146 4.146 23 C -0.091 4.091 24 H 0.113 0.887 25 C 0.007 3.993 26 O -0.403 6.403 27 C -0.147 4.147 28 C -0.214 4.214 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.137 0.863 34 H 0.165 0.835 35 H 0.252 0.748 36 H 0.115 0.885 37 H 0.140 0.860 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.247 0.753 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.315 -26.861 0.943 26.909 hybrid contribution -0.413 1.416 0.457 1.544 sum 0.902 -25.445 1.400 25.499 Atomic orbital electron populations 1.70190 1.08071 1.28835 1.49055 1.26629 0.96891 1.02785 0.95850 0.84635 0.77386 0.74130 0.79948 1.18354 1.19457 1.17889 1.21795 0.92507 0.81518 1.53317 0.88241 1.83935 1.35952 1.12605 1.81771 1.19883 0.91711 0.87901 0.94368 1.21303 0.93090 1.00302 1.11992 1.21148 1.00251 0.91501 0.96264 1.20987 0.93444 0.98092 1.07257 1.19209 0.93818 0.92853 0.96722 1.20719 1.04175 0.93672 0.94499 1.20969 0.76402 0.80958 0.91519 1.90756 1.52236 1.60926 1.41666 1.45966 1.60680 1.20226 1.09140 1.20698 0.95344 0.94002 0.84219 0.90875 1.23561 0.96922 0.99382 1.02072 1.23387 0.98449 0.95632 0.97161 1.21106 0.95038 0.97025 0.95918 0.88710 1.22325 0.81664 1.00293 0.95067 1.86438 1.23071 1.95747 1.35087 1.22734 0.94224 0.91980 1.05714 1.20217 0.99148 0.90630 1.11418 0.91849 0.86465 0.83625 0.83262 0.86340 0.83462 0.74755 0.88548 0.85994 0.90503 0.93535 0.75334 0.87712 0.87108 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.81 13.67 21.61 0.30 -58.51 16 2 C -0.02 -1.45 5.49 84.83 0.47 -0.99 16 3 Si 1.02 44.50 29.55 68.60 2.03 46.53 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 6 H -0.25 -10.33 7.11 99.48 0.71 -9.63 16 7 C -0.42 -25.44 9.49 67.92 0.64 -24.80 16 8 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 9 O -0.24 -15.08 9.76 -22.71 -0.22 -15.30 16 10 C 0.11 5.98 6.65 22.58 0.15 6.13 16 11 C -0.25 -11.62 9.17 22.39 0.21 -11.41 16 12 C -0.07 -2.72 10.04 22.25 0.22 -2.49 16 13 C -0.18 -5.91 9.70 22.30 0.22 -5.69 16 14 C -0.03 -0.90 4.37 -19.88 -0.09 -0.98 16 15 C -0.09 -2.10 5.83 29.10 0.17 -1.93 16 16 C 0.51 13.81 7.81 87.65 0.68 14.50 16 17 O -0.58 -22.58 15.74 -3.04 -0.05 -22.63 16 18 N -0.71 -12.52 5.08 -442.84 -2.25 -14.77 16 19 C 0.16 3.04 3.20 44.93 0.14 3.18 16 20 H 0.07 1.73 7.65 -2.39 -0.02 1.71 16 21 C -0.20 -4.54 10.39 26.26 0.27 -4.27 16 22 C -0.13 -2.35 9.97 26.26 0.26 -2.09 16 23 C -0.07 -0.88 3.18 -10.85 -0.03 -0.91 16 24 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 25 C 0.08 0.80 6.31 71.98 0.45 1.25 16 26 O -0.59 -7.55 13.54 -148.98 -2.02 -9.57 16 27 C -0.11 -1.07 6.32 31.71 0.20 -0.87 16 28 C -0.19 -9.00 9.65 22.39 0.22 -8.78 16 29 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 30 H 0.12 5.55 5.64 -2.91 -0.02 5.53 16 31 H 0.15 4.20 8.06 -2.91 -0.02 4.17 16 32 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 33 H 0.12 2.31 8.08 -2.39 -0.02 2.29 16 34 H 0.15 1.98 8.08 -2.39 -0.02 1.96 16 35 H 0.41 4.06 7.31 -92.71 -0.68 3.38 16 36 H 0.10 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.08 0.32 8.10 -2.39 -0.02 0.31 16 39 H 0.05 0.44 6.88 -2.39 -0.02 0.42 16 40 H 0.40 1.68 9.12 -74.06 -0.68 1.01 16 41 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.11 0.53 7.75 -2.39 -0.02 0.51 16 43 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -88.99 364.92 1.67 -87.32 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -0.30 Total: 27.09 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 4.19 Total: -40.16 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -1.95 Total: -73.28 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -2.29 Total: -47.49 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -88.99 1.67 -87.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760625880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.901 kcal (2) G-P(sol) polarization free energy of solvation -88.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds