Wall clock time and date at job start Tue Mar 31 2020 11:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38287 * 119.92411 * 2 1 4 4 C 1.38111 * 120.06482 * 179.97438 * 3 2 1 5 5 C 1.38879 * 119.93213 * 359.97438 * 4 3 2 6 6 N 1.39925 * 120.07263 * 179.97438 * 5 4 3 7 7 C 1.46503 * 119.99606 * 292.12401 * 6 5 4 8 8 C 1.50696 * 109.47070 * 269.99829 * 7 6 5 9 9 H 1.08006 * 120.00012 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99901 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00011 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00129 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46948 * 89.99735 * 12 10 8 14 14 H 1.48497 * 109.47205 * 209.99793 * 12 10 8 15 15 H 1.48498 * 109.47054 * 329.99933 * 12 10 8 16 16 C 1.34779 * 120.00184 * 112.12350 * 6 5 4 17 17 O 1.21288 * 119.99720 * 355.26132 * 16 6 5 18 18 C 1.50700 * 119.99794 * 175.26914 * 16 6 5 19 19 C 1.52998 * 109.46749 * 179.97438 * 18 16 6 20 20 H 1.08987 * 110.75319 * 303.29016 * 19 18 16 21 21 C 1.54262 * 110.69100 * 66.45455 * 19 18 16 22 22 O 1.45589 * 106.37478 * 117.32571 * 21 19 18 23 23 C 1.34527 * 109.63467 * 21.26321 * 22 21 19 24 24 O 1.20822 * 126.42794 * 147.15537 * 23 22 21 25 25 C 1.51786 * 107.14280 * 327.17635 * 23 22 21 26 26 C 1.38866 * 119.85719 * 0.25108 * 5 4 3 27 27 C 1.38118 * 119.92754 * 359.51779 * 26 5 4 28 28 H 1.09004 * 109.46776 * 90.00354 * 1 2 3 29 29 H 1.09001 * 109.47619 * 210.00450 * 1 2 3 30 30 H 1.09004 * 109.47454 * 330.00523 * 1 2 3 31 31 H 1.07991 * 119.96801 * 359.97343 * 3 2 1 32 32 H 1.08002 * 120.03378 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.47356 * 30.00169 * 7 6 5 34 34 H 1.09000 * 109.46871 * 150.00100 * 7 6 5 35 35 H 0.96995 * 120.00217 * 180.02562 * 11 10 8 36 36 H 1.08993 * 109.47314 * 59.99932 * 18 16 6 37 37 H 1.09003 * 109.46764 * 299.99687 * 18 16 6 38 38 H 1.09000 * 110.07342 * 236.55501 * 21 19 18 39 39 H 1.09005 * 110.07748 * 358.09758 * 21 19 18 40 40 H 1.08997 * 110.61318 * 272.11501 * 25 23 22 41 41 H 1.09001 * 110.61309 * 149.13433 * 25 23 22 42 42 H 1.08002 * 120.03685 * 179.74912 * 26 5 4 43 43 H 1.08000 * 119.96489 * 180.22527 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2739 0.0001 0.0016 6 7 5.6731 0.0001 0.0016 7 6 6.4056 0.4769 -1.1742 8 6 6.6567 -0.6763 -2.1112 9 1 6.3055 -1.6654 -1.8566 10 6 7.3349 -0.4687 -3.2936 11 7 7.5537 -1.4750 -4.1116 12 14 7.9430 1.2418 -3.7337 13 1 9.3163 1.4311 -3.2013 14 1 7.9588 1.3968 -5.2104 15 1 7.0372 2.2573 -3.1390 16 6 6.3471 -0.4385 1.0833 17 8 5.7437 -0.7522 2.0876 18 6 7.8502 -0.5391 1.0448 19 6 8.3611 -1.0590 2.3900 20 1 8.0251 -0.4177 3.2047 21 6 7.9067 -2.5152 2.6197 22 8 9.1199 -3.3164 2.6965 23 6 10.1636 -2.5274 3.0098 24 8 11.1276 -2.8405 3.6673 25 6 9.9024 -1.1701 2.3826 26 6 3.5781 -1.2017 -0.0031 27 6 2.1969 -1.1983 0.0012 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6551 2.1327 -0.0004 32 1 4.1162 2.1382 0.0001 33 1 5.8164 1.2385 -1.6851 34 1 7.3580 0.9041 -0.8603 35 1 8.0311 -1.3291 -4.9433 36 1 8.2754 0.4456 0.8511 37 1 8.1482 -1.2258 0.2525 38 1 7.3490 -2.5902 3.5532 39 1 7.2892 -2.8503 1.7863 40 1 10.2845 -1.1389 1.3623 41 1 10.3471 -0.3774 2.9843 42 1 4.1164 -2.1380 -0.0064 43 1 1.6552 -2.1326 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765327897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:53 Heat of formation + Delta-G solvation = -92.265639 kcal Electronic energy + Delta-G solvation = -26596.968142 eV Core-core repulsion = 22800.214389 eV Total energy + Delta-G solvation = -3796.753753 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98240 -40.02549 -38.42665 -37.38949 -35.49249 -34.10239 -32.84639 -31.66347 -30.66968 -28.97389 -28.22611 -27.37996 -25.69086 -23.05168 -22.15118 -22.00556 -21.30224 -20.64900 -18.83274 -17.30358 -17.14791 -17.02068 -16.54927 -16.21201 -16.11502 -15.36207 -15.15042 -14.81654 -14.45130 -14.08455 -13.78111 -13.59376 -13.42679 -13.17513 -13.06381 -13.01335 -12.62498 -12.42595 -12.19111 -12.12991 -11.93573 -11.68363 -11.52458 -11.38952 -11.14459 -11.01061 -10.85924 -10.79092 -10.41972 -10.36263 -10.18565 -9.78482 -9.43451 -8.85009 -8.62491 -8.61643 -7.76010 -6.33365 -4.36738 1.58164 1.72141 1.94635 3.00610 3.07001 3.15289 3.17759 3.43400 3.47690 4.03068 4.04739 4.14980 4.27689 4.63960 4.75100 4.96469 5.04836 5.07777 5.16675 5.27026 5.32717 5.38798 5.47990 5.53985 5.64724 5.68374 5.71628 5.73296 5.79881 5.85841 5.95635 5.99926 6.18013 6.29163 6.35403 6.45906 6.59517 6.78295 6.83123 6.86249 7.02246 7.28107 7.43521 7.44987 7.83673 8.22067 8.60963 8.71999 9.24150 10.78829 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009119 B = 0.004992 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.821259 B = 5607.073527 C = 7837.271814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C -0.114 4.114 4 C -0.122 4.122 5 C 0.166 3.834 6 N -0.553 5.553 7 C 0.209 3.791 8 C -0.545 4.545 9 H 0.080 0.920 10 C 0.080 3.920 11 N -0.885 5.885 12 Si 0.869 3.131 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.264 1.264 16 C 0.522 3.478 17 O -0.555 6.555 18 C -0.132 4.132 19 C -0.103 4.103 20 H 0.103 0.897 21 C 0.069 3.931 22 O -0.358 6.358 23 C 0.490 3.510 24 O -0.458 6.458 25 C -0.185 4.185 26 C -0.097 4.097 27 C -0.111 4.111 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.268 0.732 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.769 5.422 8.620 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.102 4.102 3 C -0.133 4.133 4 C -0.142 4.142 5 C 0.076 3.924 6 N -0.280 5.280 7 C 0.089 3.911 8 C -0.583 4.583 9 H 0.098 0.902 10 C -0.125 4.125 11 N -0.522 5.522 12 Si 0.695 3.305 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.189 1.189 16 C 0.312 3.688 17 O -0.435 6.435 18 C -0.171 4.171 19 C -0.122 4.122 20 H 0.121 0.879 21 C -0.005 4.005 22 O -0.275 6.275 23 C 0.330 3.670 24 O -0.342 6.342 25 C -0.224 4.224 26 C -0.116 4.116 27 C -0.130 4.130 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.140 0.860 41 H 0.127 0.873 42 H 0.139 0.861 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.508 4.835 9.219 11.777 hybrid contribution 0.412 1.014 -0.836 1.377 sum -5.096 5.850 8.383 11.422 Atomic orbital electron populations 1.20731 0.91545 1.02295 1.01998 1.19824 0.95769 0.93222 1.01339 1.20762 0.93438 0.97341 1.01734 1.21146 0.94243 0.97277 1.01509 1.17503 0.83141 0.92935 0.98859 1.45599 1.03424 1.62566 1.16425 1.19972 0.91694 0.96450 0.82969 1.21273 1.37946 0.95624 1.03441 0.90216 1.24847 0.95176 0.96691 0.95772 1.69874 1.40252 1.30888 1.11196 0.86968 0.79878 0.85024 0.78650 1.19692 1.20717 1.18897 1.20508 0.89957 0.76214 0.82158 1.90654 1.70728 1.50341 1.31746 1.21793 0.92566 1.04992 0.97761 1.22169 0.93154 0.97301 0.99610 0.87855 1.24060 0.83128 0.88564 1.04724 1.87090 1.19373 1.38939 1.82134 1.23334 0.81629 0.86405 0.75587 1.90682 1.30040 1.79367 1.34067 1.23159 0.97245 0.97068 1.04896 1.21217 0.94034 0.97687 0.98708 1.20839 0.93602 0.97399 1.01173 0.91462 0.91841 0.91926 0.86255 0.86211 0.94499 0.94762 0.92176 0.88093 0.86297 0.89120 0.87426 0.86030 0.87276 0.86055 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 36.01 0.36 -0.74 16 2 C -0.10 -1.39 5.88 -104.59 -0.62 -2.01 16 3 C -0.11 -1.61 9.69 -39.61 -0.38 -1.99 16 4 C -0.12 -1.99 9.69 -39.39 -0.38 -2.37 16 5 C 0.17 3.07 4.74 -83.69 -0.40 2.67 16 6 N -0.55 -10.40 2.51 -114.73 -0.29 -10.69 16 7 C 0.21 4.22 3.95 -5.19 -0.02 4.20 16 8 C -0.54 -13.29 9.71 -34.44 -0.33 -13.63 16 9 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 10 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.89 -24.54 13.96 55.43 0.77 -23.76 16 12 Si 0.87 18.62 27.47 -169.99 -4.67 13.95 16 13 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 15 H -0.26 -5.37 6.54 56.52 0.37 -5.00 16 16 C 0.52 9.06 7.06 -10.98 -0.08 8.98 16 17 O -0.56 -10.38 14.88 5.55 0.08 -10.29 16 18 C -0.13 -1.86 3.59 -27.88 -0.10 -1.96 16 19 C -0.10 -1.25 2.74 -89.15 -0.24 -1.50 16 20 H 0.10 1.17 8.04 -51.94 -0.42 0.76 16 21 C 0.07 0.92 6.50 37.82 0.25 1.17 16 22 O -0.36 -5.43 11.07 -39.60 -0.44 -5.87 16 23 C 0.49 7.13 8.57 36.54 0.31 7.45 16 24 O -0.46 -7.93 18.00 -18.28 -0.33 -8.26 16 25 C -0.19 -2.06 6.58 -26.54 -0.17 -2.23 16 26 C -0.10 -1.73 9.56 -39.39 -0.38 -2.10 16 27 C -0.11 -1.68 9.69 -39.61 -0.38 -2.06 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.04 0.76 6.92 -51.93 -0.36 0.41 16 34 H 0.03 0.63 5.90 -51.93 -0.31 0.33 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.10 1.25 7.26 -51.93 -0.38 0.87 16 37 H 0.12 1.85 7.91 -51.93 -0.41 1.44 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.11 1.54 7.33 -51.93 -0.38 1.16 16 40 H 0.12 1.27 7.82 -51.93 -0.41 0.86 16 41 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 43 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -30.35 362.45 -8.12 -38.47 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.05 Total: 5.18 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.67 Total: -4.19 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.49 Total: -34.45 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.68 Total: -24.43 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.67 Total: 13.95 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.35 -8.12 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765327897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.792 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds