Wall clock time and date at job start Tue Mar 31 2020 11:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38287 * 119.92411 * 2 1 4 4 C 1.38111 * 120.06482 * 179.97438 * 3 2 1 5 5 C 1.38879 * 119.93213 * 359.97438 * 4 3 2 6 6 N 1.39925 * 120.07263 * 179.97438 * 5 4 3 7 7 C 1.46503 * 119.99606 * 292.12401 * 6 5 4 8 8 C 1.50696 * 109.47070 * 269.99829 * 7 6 5 9 9 H 1.08006 * 120.00012 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99901 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00011 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00129 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46948 * 89.99735 * 12 10 8 14 14 H 1.48497 * 109.47205 * 209.99793 * 12 10 8 15 15 H 1.48498 * 109.47054 * 329.99933 * 12 10 8 16 16 C 1.34779 * 120.00184 * 112.12350 * 6 5 4 17 17 O 1.21288 * 119.99720 * 355.26132 * 16 6 5 18 18 C 1.50700 * 119.99794 * 175.26914 * 16 6 5 19 19 C 1.52998 * 109.46749 * 179.97438 * 18 16 6 20 20 H 1.08987 * 110.75319 * 303.29016 * 19 18 16 21 21 C 1.54262 * 110.69100 * 66.45455 * 19 18 16 22 22 O 1.45589 * 106.37478 * 117.32571 * 21 19 18 23 23 C 1.34527 * 109.63467 * 21.26321 * 22 21 19 24 24 O 1.20822 * 126.42794 * 147.15537 * 23 22 21 25 25 C 1.51786 * 107.14280 * 327.17635 * 23 22 21 26 26 C 1.38866 * 119.85719 * 0.25108 * 5 4 3 27 27 C 1.38118 * 119.92754 * 359.51779 * 26 5 4 28 28 H 1.09004 * 109.46776 * 90.00354 * 1 2 3 29 29 H 1.09001 * 109.47619 * 210.00450 * 1 2 3 30 30 H 1.09004 * 109.47454 * 330.00523 * 1 2 3 31 31 H 1.07991 * 119.96801 * 359.97343 * 3 2 1 32 32 H 1.08002 * 120.03378 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.47356 * 30.00169 * 7 6 5 34 34 H 1.09000 * 109.46871 * 150.00100 * 7 6 5 35 35 H 0.96995 * 120.00217 * 180.02562 * 11 10 8 36 36 H 1.08993 * 109.47314 * 59.99932 * 18 16 6 37 37 H 1.09003 * 109.46764 * 299.99687 * 18 16 6 38 38 H 1.09000 * 110.07342 * 236.55501 * 21 19 18 39 39 H 1.09005 * 110.07748 * 358.09758 * 21 19 18 40 40 H 1.08997 * 110.61318 * 272.11501 * 25 23 22 41 41 H 1.09001 * 110.61309 * 149.13433 * 25 23 22 42 42 H 1.08002 * 120.03685 * 179.74912 * 26 5 4 43 43 H 1.08000 * 119.96489 * 180.22527 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2739 0.0001 0.0016 6 7 5.6731 0.0001 0.0016 7 6 6.4056 0.4769 -1.1742 8 6 6.6567 -0.6763 -2.1112 9 1 6.3055 -1.6654 -1.8566 10 6 7.3349 -0.4687 -3.2936 11 7 7.5537 -1.4750 -4.1116 12 14 7.9430 1.2418 -3.7337 13 1 9.3163 1.4311 -3.2013 14 1 7.9588 1.3968 -5.2104 15 1 7.0372 2.2573 -3.1390 16 6 6.3471 -0.4385 1.0833 17 8 5.7437 -0.7522 2.0876 18 6 7.8502 -0.5391 1.0448 19 6 8.3611 -1.0590 2.3900 20 1 8.0251 -0.4177 3.2047 21 6 7.9067 -2.5152 2.6197 22 8 9.1199 -3.3164 2.6965 23 6 10.1636 -2.5274 3.0098 24 8 11.1276 -2.8405 3.6673 25 6 9.9024 -1.1701 2.3826 26 6 3.5781 -1.2017 -0.0031 27 6 2.1969 -1.1983 0.0012 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6551 2.1327 -0.0004 32 1 4.1162 2.1382 0.0001 33 1 5.8164 1.2385 -1.6851 34 1 7.3580 0.9041 -0.8603 35 1 8.0311 -1.3291 -4.9433 36 1 8.2754 0.4456 0.8511 37 1 8.1482 -1.2258 0.2525 38 1 7.3490 -2.5902 3.5532 39 1 7.2892 -2.8503 1.7863 40 1 10.2845 -1.1389 1.3623 41 1 10.3471 -0.3774 2.9843 42 1 4.1164 -2.1380 -0.0064 43 1 1.6552 -2.1326 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765327897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:53 Heat of formation + Delta-G solvation = -108.414624 kcal Electronic energy + Delta-G solvation = -26597.668414 eV Core-core repulsion = 22800.214389 eV Total energy + Delta-G solvation = -3797.454026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.15534 -41.32618 -39.65176 -38.62015 -36.92276 -35.26422 -34.62601 -32.90224 -31.87077 -30.05019 -29.90159 -28.50976 -26.81181 -24.66302 -23.46931 -23.19834 -22.40697 -21.79356 -20.13178 -19.09147 -18.43384 -18.29844 -17.71709 -17.65721 -17.24946 -16.70432 -16.32427 -16.13039 -15.94293 -15.38448 -14.98038 -14.69731 -14.60191 -14.48395 -14.35458 -14.18493 -14.10929 -13.73938 -13.53504 -13.18509 -13.02808 -12.90246 -12.76412 -12.58677 -12.46050 -12.34640 -12.12020 -12.07071 -11.90583 -11.69636 -11.48053 -11.36459 -10.84551 -10.72782 -9.98514 -9.84530 -9.08931 -8.28676 -6.36899 0.36435 0.49940 0.80149 1.40826 1.44137 1.52385 1.64671 2.15290 2.31077 2.35419 2.81480 2.98677 3.05648 3.22937 3.56934 3.68669 3.95181 4.00694 4.06547 4.10423 4.36299 4.36521 4.46399 4.50798 4.52205 4.55213 4.61483 4.70547 4.80131 4.83850 4.85743 4.89278 4.91475 5.09705 5.15204 5.18685 5.40045 5.41930 5.59203 5.67374 5.69421 5.77305 6.11112 6.22418 6.29932 6.52889 6.68960 7.20964 7.31702 8.87329 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009119 B = 0.004992 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.821259 B = 5607.073527 C = 7837.271814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C -0.111 4.111 4 C -0.132 4.132 5 C 0.130 3.870 6 N -0.559 5.559 7 C 0.218 3.782 8 C -0.538 4.538 9 H 0.029 0.971 10 C 0.021 3.979 11 N -0.942 5.942 12 Si 0.937 3.063 13 H -0.252 1.252 14 H -0.292 1.292 15 H -0.239 1.239 16 C 0.516 3.484 17 O -0.572 6.572 18 C -0.127 4.127 19 C -0.093 4.093 20 H 0.120 0.880 21 C 0.068 3.932 22 O -0.379 6.379 23 C 0.487 3.513 24 O -0.491 6.491 25 C -0.168 4.168 26 C -0.127 4.127 27 C -0.119 4.119 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.155 0.845 32 H 0.133 0.867 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.268 0.732 36 H 0.129 0.871 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.096 0.904 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 8.950 9.364 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.098 4.098 3 C -0.129 4.129 4 C -0.151 4.151 5 C 0.040 3.960 6 N -0.286 5.286 7 C 0.097 3.903 8 C -0.576 4.576 9 H 0.048 0.952 10 C -0.178 4.178 11 N -0.581 5.581 12 Si 0.759 3.241 13 H -0.176 1.176 14 H -0.218 1.218 15 H -0.162 1.162 16 C 0.307 3.693 17 O -0.452 6.452 18 C -0.166 4.166 19 C -0.112 4.112 20 H 0.138 0.862 21 C -0.006 4.006 22 O -0.297 6.297 23 C 0.330 3.670 24 O -0.377 6.377 25 C -0.206 4.206 26 C -0.146 4.146 27 C -0.137 4.137 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.173 0.827 32 H 0.151 0.849 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.114 0.886 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.326 8.371 9.990 14.487 hybrid contribution 0.485 -0.231 -1.047 1.176 sum -5.841 8.139 8.943 13.429 Atomic orbital electron populations 1.20805 0.88485 1.03873 1.03145 1.20302 0.97951 0.92416 0.99162 1.21215 0.92788 0.98960 0.99970 1.21390 0.95395 0.96821 1.01508 1.17853 0.83233 0.93965 1.00984 1.45616 1.03870 1.62926 1.16164 1.19795 0.93133 0.94543 0.82840 1.21419 1.36776 0.95062 1.04374 0.95245 1.25767 0.95432 1.01118 0.95520 1.70054 1.42220 1.33823 1.12029 0.85873 0.80557 0.79850 0.77779 1.17633 1.21788 1.16250 1.21071 0.91205 0.75413 0.81599 1.90629 1.71472 1.50845 1.32289 1.21807 0.90321 1.06121 0.98343 1.22129 0.93882 0.96182 0.98959 0.86171 1.24088 0.82511 0.89528 1.04460 1.87063 1.20194 1.40347 1.82079 1.23891 0.80766 0.87516 0.74837 1.90660 1.31106 1.80273 1.35646 1.23146 0.96225 0.95513 1.05698 1.21245 0.95495 0.96885 1.01008 1.21122 0.92613 0.99230 1.00762 0.90341 0.90806 0.89925 0.82749 0.84908 0.94191 0.91840 0.92341 0.85281 0.88115 0.88253 0.89270 0.84859 0.84068 0.88613 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 10.01 71.24 0.71 -1.07 16 2 C -0.10 -2.49 5.88 -19.84 -0.12 -2.61 16 3 C -0.11 -2.84 9.69 22.25 0.22 -2.62 16 4 C -0.13 -4.09 9.69 22.39 0.22 -3.88 16 5 C 0.13 4.85 4.74 38.15 0.18 5.03 16 6 N -0.56 -21.09 2.51 -635.29 -1.59 -22.69 16 7 C 0.22 8.59 3.95 85.63 0.34 8.93 16 8 C -0.54 -27.01 9.71 25.60 0.25 -26.76 16 9 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 10 C 0.02 1.07 5.47 84.65 0.46 1.53 16 11 N -0.94 -54.20 13.96 21.45 0.30 -53.90 16 12 Si 0.94 37.37 27.47 68.60 1.88 39.25 16 13 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 14 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.24 -8.52 6.54 99.48 0.65 -7.87 16 16 C 0.52 17.91 7.06 87.66 0.62 18.53 16 17 O -0.57 -21.55 14.88 -3.05 -0.05 -21.60 16 18 C -0.13 -3.43 3.59 29.85 0.11 -3.32 16 19 C -0.09 -2.10 2.74 -9.84 -0.03 -2.12 16 20 H 0.12 2.40 8.04 -2.39 -0.02 2.38 16 21 C 0.07 1.84 6.50 72.41 0.47 2.31 16 22 O -0.38 -11.72 11.07 -54.75 -0.61 -12.32 16 23 C 0.49 13.90 8.57 71.58 0.61 14.51 16 24 O -0.49 -16.91 18.00 21.53 0.39 -16.52 16 25 C -0.17 -3.33 6.58 30.72 0.20 -3.12 16 26 C -0.13 -4.73 9.56 22.39 0.21 -4.51 16 27 C -0.12 -3.57 9.69 22.25 0.22 -3.35 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 30 H 0.08 1.09 8.08 -2.38 -0.02 1.07 16 31 H 0.15 2.81 8.06 -2.92 -0.02 2.79 16 32 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 33 H 0.04 1.57 6.92 -2.38 -0.02 1.56 16 34 H 0.06 2.16 5.90 -2.39 -0.01 2.14 16 35 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.13 2.76 7.26 -2.39 -0.02 2.75 16 37 H 0.10 3.16 7.91 -2.39 -0.02 3.14 16 38 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.09 2.74 7.33 -2.38 -0.02 2.72 16 40 H 0.13 2.42 7.82 -2.39 -0.02 2.40 16 41 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.10 3.89 8.06 -2.91 -0.02 3.87 16 43 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -70.06 362.45 5.96 -64.10 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.96 Total: 26.20 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 4.67 Total: -2.53 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -1.29 Total: -76.58 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -0.26 Total: -50.45 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 1.88 Total: 39.25 kcal Total: -70.06 5.96 -64.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765327897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.311 kcal (2) G-P(sol) polarization free energy of solvation -70.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds