Wall clock time and date at job start Tue Mar 31 2020 11:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38289 * 119.92943 * 2 1 4 4 C 1.38109 * 120.07158 * 179.97438 * 3 2 1 5 5 C 1.38874 * 119.92793 * 0.02562 * 4 3 2 6 6 N 1.39925 * 120.06707 * 180.02562 * 5 4 3 7 7 C 1.46496 * 119.99882 * 292.12354 * 6 5 4 8 8 C 1.50700 * 109.47463 * 270.00097 * 7 6 5 9 9 H 1.08005 * 119.99735 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00153 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00119 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99995 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47144 * 89.99831 * 12 10 8 14 14 H 1.48498 * 109.46911 * 209.99454 * 12 10 8 15 15 H 1.48496 * 109.46967 * 329.99766 * 12 10 8 16 16 C 1.34780 * 119.99655 * 112.13024 * 6 5 4 17 17 O 1.21285 * 120.00100 * 355.26088 * 16 6 5 18 18 C 1.50706 * 119.99541 * 175.26647 * 16 6 5 19 19 C 1.53005 * 109.46842 * 179.97438 * 18 16 6 20 20 H 1.09000 * 110.75191 * 54.29623 * 19 18 16 21 21 C 1.54273 * 110.84121 * 290.82728 * 19 18 16 22 22 O 1.45375 * 106.62621 * 226.41433 * 21 19 18 23 23 C 1.34000 * 111.49330 * 357.73027 * 22 21 19 24 24 O 1.20832 * 125.69363 * 199.70422 * 23 22 21 25 25 C 1.52211 * 108.64388 * 19.69237 * 23 22 21 26 26 C 1.38866 * 119.85740 * 0.27559 * 5 4 3 27 27 C 1.38114 * 119.93248 * 359.42603 * 26 5 4 28 28 H 1.09000 * 109.47336 * 89.99449 * 1 2 3 29 29 H 1.08997 * 109.47196 * 210.00217 * 1 2 3 30 30 H 1.08998 * 109.47204 * 329.99836 * 1 2 3 31 31 H 1.08002 * 119.96090 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.03570 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47416 * 30.00949 * 7 6 5 34 34 H 1.09006 * 109.46883 * 150.00380 * 7 6 5 35 35 H 0.97001 * 120.00001 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.47391 * 59.99619 * 18 16 6 37 37 H 1.08999 * 109.46950 * 299.99475 * 18 16 6 38 38 H 1.08998 * 110.02729 * 345.70708 * 21 19 18 39 39 H 1.09002 * 110.02576 * 107.12753 * 21 19 18 40 40 H 1.09004 * 110.88273 * 213.12186 * 25 23 22 41 41 H 1.09000 * 110.77701 * 89.70978 * 25 23 22 42 42 H 1.08009 * 120.03518 * 179.72691 * 26 5 4 43 43 H 1.08002 * 119.96569 * 180.30289 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2739 0.0001 0.0005 6 7 5.6731 0.0001 0.0016 7 6 6.4065 0.4785 -1.1729 8 6 6.6584 -0.6734 -2.1114 9 1 6.3070 -1.6628 -1.8584 10 6 7.3375 -0.4641 -3.2929 11 7 7.7650 0.7408 -3.6012 12 14 7.6492 -1.8919 -4.4565 13 1 6.5201 -2.0054 -5.4144 14 1 8.9104 -1.6550 -5.2039 15 1 7.7649 -3.1501 -3.6763 16 6 6.3461 -0.4400 1.0832 17 8 5.7420 -0.7551 2.0866 18 6 7.8494 -0.5405 1.0458 19 6 8.3592 -1.0624 2.3907 20 1 7.8697 -2.0007 2.6515 21 6 8.1560 -0.0102 3.5004 22 8 9.4040 0.0575 4.2431 23 6 10.2998 -0.8245 3.7791 24 8 11.2664 -1.2300 4.3801 25 6 9.8970 -1.2310 2.3687 26 6 3.5780 -1.2017 -0.0058 27 6 2.1969 -1.1983 -0.0001 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6551 2.1328 0.0004 32 1 4.1163 2.1382 0.0010 33 1 5.8178 1.2409 -1.6831 34 1 7.3587 0.9053 -0.8577 35 1 8.2425 0.8881 -4.4326 36 1 8.2748 0.4445 0.8538 37 1 8.1480 -1.2262 0.2528 38 1 7.9319 0.9605 3.0580 39 1 7.3448 -0.3162 4.1610 40 1 10.1682 -2.2680 2.1708 41 1 10.3471 -0.5663 1.6313 42 1 4.1163 -2.1380 -0.0103 43 1 1.6552 -2.1327 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765327898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:56 Heat of formation + Delta-G solvation = -100.449446 kcal Electronic energy + Delta-G solvation = -26439.878325 eV Core-core repulsion = 22642.769696 eV Total energy + Delta-G solvation = -3797.108629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97927 -39.96244 -38.37562 -37.38923 -35.39301 -34.15077 -32.92325 -31.55783 -30.63101 -28.92489 -27.64056 -27.31666 -25.64704 -23.31258 -22.21625 -22.05243 -21.32621 -20.62207 -18.81115 -17.38141 -16.94945 -16.79438 -16.60149 -16.06317 -15.96329 -15.27432 -15.09507 -14.70611 -14.35354 -14.27498 -13.76545 -13.60657 -13.56323 -13.22950 -13.12838 -12.82112 -12.52362 -12.37253 -12.14216 -11.90526 -11.81238 -11.59047 -11.36797 -11.30449 -11.11683 -11.06212 -10.86419 -10.79215 -10.42639 -10.32108 -10.13974 -9.95936 -9.36345 -8.70885 -8.58778 -8.56273 -7.71989 -6.32623 -4.40870 1.62886 1.75640 2.06775 3.07365 3.14055 3.22265 3.24464 3.27927 3.56713 3.97900 4.07124 4.21972 4.29801 4.64585 4.78187 5.01355 5.08524 5.09918 5.22978 5.30639 5.33947 5.41252 5.49988 5.54428 5.66265 5.66625 5.72675 5.75043 5.83838 5.98782 6.05240 6.06058 6.16173 6.35092 6.53752 6.71992 6.81681 6.85141 6.86208 7.01531 7.15180 7.46525 7.50818 7.62326 7.86780 8.03011 8.60110 8.76148 9.27624 10.74191 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008498 B = 0.004891 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3293.975576 B = 5723.170263 C = 8307.713259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.113 4.113 4 C -0.120 4.120 5 C 0.170 3.830 6 N -0.559 5.559 7 C 0.238 3.762 8 C -0.541 4.541 9 H 0.062 0.938 10 C 0.068 3.932 11 N -0.889 5.889 12 Si 0.896 3.104 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.520 3.480 17 O -0.560 6.560 18 C -0.126 4.126 19 C -0.105 4.105 20 H 0.104 0.896 21 C 0.066 3.934 22 O -0.354 6.354 23 C 0.487 3.513 24 O -0.465 6.465 25 C -0.184 4.184 26 C -0.102 4.102 27 C -0.113 4.113 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.039 0.961 34 H 0.043 0.957 35 H 0.267 0.733 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 -0.408 6.382 8.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.132 4.132 4 C -0.140 4.140 5 C 0.078 3.922 6 N -0.286 5.286 7 C 0.119 3.881 8 C -0.579 4.579 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.527 5.527 12 Si 0.724 3.276 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.197 1.197 16 C 0.309 3.691 17 O -0.440 6.440 18 C -0.165 4.165 19 C -0.124 4.124 20 H 0.123 0.877 21 C -0.008 4.008 22 O -0.271 6.271 23 C 0.328 3.672 24 O -0.349 6.349 25 C -0.222 4.222 26 C -0.122 4.122 27 C -0.132 4.132 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.879 -0.485 7.196 9.305 hybrid contribution 0.199 -0.697 -1.276 1.467 sum -5.680 -1.182 5.920 8.289 Atomic orbital electron populations 1.20721 0.91610 1.02254 1.01928 1.19806 0.95713 0.93239 1.01629 1.20778 0.93505 0.97308 1.01581 1.21175 0.94180 0.97445 1.01155 1.17533 0.83480 0.92834 0.98302 1.45950 1.03379 1.62144 1.17097 1.19604 0.91804 0.95674 0.80972 1.21401 1.37223 0.95136 1.04160 0.91987 1.24917 0.95086 0.95962 0.97598 1.69907 1.37579 1.20607 1.24579 0.86511 0.77893 0.82307 0.80914 1.20432 1.20948 1.19696 1.20511 0.89952 0.76338 0.82279 1.90641 1.70708 1.50625 1.32048 1.21691 0.92672 1.04814 0.97347 1.22276 0.94011 1.00669 0.95451 0.87746 1.24112 0.82336 1.00932 0.93433 1.86748 1.26064 1.55230 1.59059 1.23358 0.81196 0.75044 0.87623 1.90698 1.26822 1.51634 1.65769 1.23266 0.96687 1.06090 0.96153 1.21190 0.94004 0.97618 0.99360 1.20811 0.93602 0.97318 1.01428 0.91533 0.91927 0.91921 0.86266 0.86064 0.94254 0.93881 0.92327 0.88173 0.86307 0.88703 0.87883 0.86920 0.86177 0.86301 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 36.00 0.36 -0.76 16 2 C -0.10 -1.45 5.88 -104.59 -0.62 -2.06 16 3 C -0.11 -1.64 9.69 -39.61 -0.38 -2.03 16 4 C -0.12 -2.02 9.69 -39.39 -0.38 -2.40 16 5 C 0.17 3.19 4.74 -83.70 -0.40 2.79 16 6 N -0.56 -10.75 2.51 -114.74 -0.29 -11.04 16 7 C 0.24 5.13 4.88 -5.20 -0.03 5.10 16 8 C -0.54 -12.93 9.16 -34.44 -0.32 -13.24 16 9 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 10 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -23.01 13.29 55.43 0.74 -22.28 16 12 Si 0.90 19.43 29.54 -169.99 -5.02 14.41 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 C 0.52 9.20 7.34 -10.98 -0.08 9.12 16 17 O -0.56 -10.69 14.97 5.55 0.08 -10.60 16 18 C -0.13 -1.81 3.65 -27.88 -0.10 -1.91 16 19 C -0.11 -1.29 2.67 -89.05 -0.24 -1.53 16 20 H 0.10 1.31 7.97 -51.93 -0.41 0.89 16 21 C 0.07 0.82 6.63 37.82 0.25 1.07 16 22 O -0.35 -5.04 10.95 -38.27 -0.42 -5.46 16 23 C 0.49 6.93 8.64 36.75 0.32 7.25 16 24 O -0.46 -8.01 18.00 -18.38 -0.33 -8.34 16 25 C -0.18 -2.07 6.55 -26.23 -0.17 -2.24 16 26 C -0.10 -1.82 9.56 -39.39 -0.38 -2.19 16 27 C -0.11 -1.70 9.69 -39.61 -0.38 -2.09 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 33 H 0.04 0.92 7.86 -51.93 -0.41 0.52 16 34 H 0.04 0.92 6.47 -51.93 -0.34 0.58 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.10 1.35 7.16 -51.93 -0.37 0.98 16 37 H 0.12 1.80 7.91 -51.93 -0.41 1.39 16 38 H 0.09 1.13 7.70 -51.93 -0.40 0.73 16 39 H 0.10 1.29 8.06 -51.93 -0.42 0.87 16 40 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.12 1.22 7.91 -51.93 -0.41 0.80 16 42 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 43 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -29.11 366.66 -8.44 -37.55 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.09 Total: 3.76 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.64 Total: -3.53 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.45 Total: -33.31 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.67 Total: -24.41 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.11 -8.44 -37.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765327898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.896 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds