Wall clock time and date at job start Tue Mar 31 2020 11:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38289 * 119.92943 * 2 1 4 4 C 1.38109 * 120.07158 * 179.97438 * 3 2 1 5 5 C 1.38874 * 119.92793 * 0.02562 * 4 3 2 6 6 N 1.39925 * 120.06707 * 180.02562 * 5 4 3 7 7 C 1.46496 * 119.99882 * 292.12354 * 6 5 4 8 8 C 1.50700 * 109.47463 * 270.00097 * 7 6 5 9 9 H 1.08005 * 119.99735 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00153 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00119 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99995 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47144 * 89.99831 * 12 10 8 14 14 H 1.48498 * 109.46911 * 209.99454 * 12 10 8 15 15 H 1.48496 * 109.46967 * 329.99766 * 12 10 8 16 16 C 1.34780 * 119.99655 * 112.13024 * 6 5 4 17 17 O 1.21285 * 120.00100 * 355.26088 * 16 6 5 18 18 C 1.50706 * 119.99541 * 175.26647 * 16 6 5 19 19 C 1.53005 * 109.46842 * 179.97438 * 18 16 6 20 20 H 1.09000 * 110.75191 * 54.29623 * 19 18 16 21 21 C 1.54273 * 110.84121 * 290.82728 * 19 18 16 22 22 O 1.45375 * 106.62621 * 226.41433 * 21 19 18 23 23 C 1.34000 * 111.49330 * 357.73027 * 22 21 19 24 24 O 1.20832 * 125.69363 * 199.70422 * 23 22 21 25 25 C 1.52211 * 108.64388 * 19.69237 * 23 22 21 26 26 C 1.38866 * 119.85740 * 0.27559 * 5 4 3 27 27 C 1.38114 * 119.93248 * 359.42603 * 26 5 4 28 28 H 1.09000 * 109.47336 * 89.99449 * 1 2 3 29 29 H 1.08997 * 109.47196 * 210.00217 * 1 2 3 30 30 H 1.08998 * 109.47204 * 329.99836 * 1 2 3 31 31 H 1.08002 * 119.96090 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.03570 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47416 * 30.00949 * 7 6 5 34 34 H 1.09006 * 109.46883 * 150.00380 * 7 6 5 35 35 H 0.97001 * 120.00001 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.47391 * 59.99619 * 18 16 6 37 37 H 1.08999 * 109.46950 * 299.99475 * 18 16 6 38 38 H 1.08998 * 110.02729 * 345.70708 * 21 19 18 39 39 H 1.09002 * 110.02576 * 107.12753 * 21 19 18 40 40 H 1.09004 * 110.88273 * 213.12186 * 25 23 22 41 41 H 1.09000 * 110.77701 * 89.70978 * 25 23 22 42 42 H 1.08009 * 120.03518 * 179.72691 * 26 5 4 43 43 H 1.08002 * 119.96569 * 180.30289 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2739 0.0001 0.0005 6 7 5.6731 0.0001 0.0016 7 6 6.4065 0.4785 -1.1729 8 6 6.6584 -0.6734 -2.1114 9 1 6.3070 -1.6628 -1.8584 10 6 7.3375 -0.4641 -3.2929 11 7 7.7650 0.7408 -3.6012 12 14 7.6492 -1.8919 -4.4565 13 1 6.5201 -2.0054 -5.4144 14 1 8.9104 -1.6550 -5.2039 15 1 7.7649 -3.1501 -3.6763 16 6 6.3461 -0.4400 1.0832 17 8 5.7420 -0.7551 2.0866 18 6 7.8494 -0.5405 1.0458 19 6 8.3592 -1.0624 2.3907 20 1 7.8697 -2.0007 2.6515 21 6 8.1560 -0.0102 3.5004 22 8 9.4040 0.0575 4.2431 23 6 10.2998 -0.8245 3.7791 24 8 11.2664 -1.2300 4.3801 25 6 9.8970 -1.2310 2.3687 26 6 3.5780 -1.2017 -0.0058 27 6 2.1969 -1.1983 -0.0001 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6551 2.1328 0.0004 32 1 4.1163 2.1382 0.0010 33 1 5.8178 1.2409 -1.6831 34 1 7.3587 0.9053 -0.8577 35 1 8.2425 0.8881 -4.4326 36 1 8.2748 0.4445 0.8538 37 1 8.1480 -1.2262 0.2528 38 1 7.9319 0.9605 3.0580 39 1 7.3448 -0.3162 4.1610 40 1 10.1682 -2.2680 2.1708 41 1 10.3471 -0.5663 1.6313 42 1 4.1163 -2.1380 -0.0103 43 1 1.6552 -2.1327 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765327898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:55 Heat of formation + Delta-G solvation = -113.931282 kcal Electronic energy + Delta-G solvation = -26440.462942 eV Core-core repulsion = 22642.769696 eV Total energy + Delta-G solvation = -3797.693246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.12652 -41.29516 -39.62598 -38.59894 -36.86477 -35.31833 -34.65279 -32.79699 -31.85500 -30.01799 -29.28927 -28.46388 -26.80180 -25.00604 -23.51423 -23.21472 -22.41512 -21.77383 -20.13072 -18.69609 -18.49353 -18.26231 -17.73937 -17.52353 -17.07746 -16.64672 -16.36600 -16.22309 -15.67388 -15.54765 -14.95155 -14.69802 -14.49300 -14.46670 -14.34368 -14.28087 -14.05265 -13.61341 -13.40320 -13.08950 -12.95848 -12.91935 -12.76581 -12.63083 -12.46284 -12.40406 -12.14483 -12.06735 -11.99241 -11.68941 -11.48240 -11.31571 -10.80069 -10.57365 -9.97594 -9.83096 -9.09224 -8.20645 -6.34697 0.38746 0.51362 0.94508 1.41599 1.45378 1.52778 1.68764 2.17873 2.20950 2.42198 2.83858 2.93043 3.10634 3.23836 3.56507 3.72955 3.96836 4.02836 4.07859 4.11731 4.29031 4.40436 4.50227 4.51661 4.55081 4.60745 4.66692 4.76616 4.85972 4.91632 4.92296 4.96704 5.07710 5.14604 5.19442 5.23132 5.42962 5.58709 5.70403 5.71116 5.73936 5.82854 6.03868 6.19030 6.34072 6.51403 6.77709 7.26894 7.39388 8.84580 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008498 B = 0.004891 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3293.975576 B = 5723.170263 C = 8307.713259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.100 4.100 3 C -0.113 4.113 4 C -0.136 4.136 5 C 0.132 3.868 6 N -0.562 5.562 7 C 0.254 3.746 8 C -0.542 4.542 9 H 0.053 0.947 10 C 0.028 3.972 11 N -0.917 5.917 12 Si 0.950 3.050 13 H -0.282 1.282 14 H -0.280 1.280 15 H -0.267 1.267 16 C 0.515 3.485 17 O -0.575 6.575 18 C -0.118 4.118 19 C -0.096 4.096 20 H 0.104 0.896 21 C 0.068 3.932 22 O -0.366 6.366 23 C 0.487 3.513 24 O -0.500 6.500 25 C -0.169 4.169 26 C -0.125 4.125 27 C -0.116 4.116 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.150 0.850 32 H 0.121 0.879 33 H 0.015 0.985 34 H 0.046 0.954 35 H 0.268 0.732 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.105 0.895 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.515 -0.787 6.113 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.100 4.100 3 C -0.131 4.131 4 C -0.156 4.156 5 C 0.041 3.959 6 N -0.289 5.289 7 C 0.134 3.866 8 C -0.580 4.580 9 H 0.071 0.929 10 C -0.173 4.173 11 N -0.556 5.556 12 Si 0.776 3.224 13 H -0.208 1.208 14 H -0.206 1.206 15 H -0.191 1.191 16 C 0.306 3.694 17 O -0.456 6.456 18 C -0.157 4.157 19 C -0.115 4.115 20 H 0.122 0.878 21 C -0.006 4.006 22 O -0.282 6.282 23 C 0.330 3.670 24 O -0.387 6.387 25 C -0.207 4.207 26 C -0.144 4.144 27 C -0.135 4.135 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.139 0.861 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.149 0.851 41 H 0.155 0.845 42 H 0.124 0.876 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.234 -0.867 6.936 10.059 hybrid contribution 0.465 -0.540 -1.160 1.361 sum -6.769 -1.407 5.776 9.009 Atomic orbital electron populations 1.20795 0.88465 1.03843 1.03141 1.20295 0.97942 0.92408 0.99340 1.21177 0.92668 0.99063 1.00193 1.21355 0.95500 0.96876 1.01857 1.17881 0.83404 0.93979 1.00611 1.45887 1.03889 1.62439 1.16694 1.19229 0.91571 0.94336 0.81424 1.21576 1.36529 0.95303 1.04623 0.92865 1.25540 0.95091 0.97796 0.98896 1.69988 1.38497 1.22058 1.25093 0.85668 0.77547 0.80070 0.79106 1.20797 1.20577 1.19114 1.21039 0.91167 0.75593 0.81599 1.90619 1.71429 1.51220 1.32360 1.21662 0.90331 1.05382 0.98341 1.22165 0.94774 1.00422 0.94155 0.87785 1.24147 0.81643 1.01399 0.93381 1.86731 1.26550 1.55257 1.59684 1.23761 0.80473 0.74333 0.88389 1.90679 1.28271 1.52940 1.66804 1.23245 0.95464 1.07574 0.94390 1.21261 0.95398 0.96804 1.00977 1.21148 0.92647 0.99134 1.00524 0.90315 0.90553 0.90241 0.83260 0.86069 0.96657 0.93650 0.92295 0.87118 0.86756 0.88001 0.87939 0.85103 0.84473 0.87640 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 10.01 71.24 0.71 -1.07 16 2 C -0.10 -2.56 5.88 -19.84 -0.12 -2.67 16 3 C -0.11 -3.08 9.69 22.25 0.22 -2.87 16 4 C -0.14 -4.61 9.69 22.39 0.22 -4.39 16 5 C 0.13 5.04 4.74 38.15 0.18 5.22 16 6 N -0.56 -22.07 2.51 -635.30 -1.59 -23.66 16 7 C 0.25 11.17 4.88 85.63 0.42 11.59 16 8 C -0.54 -26.11 9.16 25.60 0.23 -25.88 16 9 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 10 C 0.03 1.36 5.46 84.65 0.46 1.82 16 11 N -0.92 -47.62 13.29 21.45 0.28 -47.33 16 12 Si 0.95 39.55 29.54 68.60 2.03 41.58 16 13 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 16 C 0.52 18.36 7.34 87.66 0.64 19.01 16 17 O -0.58 -22.07 14.97 -3.04 -0.05 -22.12 16 18 C -0.12 -3.31 3.65 29.85 0.11 -3.20 16 19 C -0.10 -2.26 2.67 -9.78 -0.03 -2.29 16 20 H 0.10 2.50 7.97 -2.39 -0.02 2.48 16 21 C 0.07 1.64 6.63 72.41 0.48 2.12 16 22 O -0.37 -10.15 10.95 -49.59 -0.54 -10.69 16 23 C 0.49 13.48 8.64 71.72 0.62 14.10 16 24 O -0.50 -17.11 18.00 21.58 0.39 -16.72 16 25 C -0.17 -3.50 6.55 30.92 0.20 -3.30 16 26 C -0.12 -4.49 9.56 22.39 0.21 -4.28 16 27 C -0.12 -3.36 9.69 22.25 0.22 -3.14 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 30 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 31 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 32 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.02 0.74 7.86 -2.39 -0.02 0.72 16 34 H 0.05 1.96 6.47 -2.38 -0.02 1.94 16 35 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 36 H 0.11 2.88 7.16 -2.39 -0.02 2.87 16 37 H 0.11 3.38 7.91 -2.39 -0.02 3.36 16 38 H 0.10 2.34 7.70 -2.39 -0.02 2.32 16 39 H 0.10 2.52 8.06 -2.39 -0.02 2.50 16 40 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.14 2.45 7.91 -2.39 -0.02 2.44 16 42 H 0.11 3.93 8.06 -2.91 -0.02 3.91 16 43 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -62.89 366.66 6.31 -56.58 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 1.01 Total: 21.61 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 4.78 Total: 0.77 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -1.31 Total: -71.00 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.20 Total: -49.53 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -62.89 6.31 -56.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765327898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.355 kcal (2) G-P(sol) polarization free energy of solvation -62.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds