Wall clock time and date at job start Tue Mar 31 2020 11:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.47373 * 2 1 4 4 C 1.51173 * 110.52682 * 122.64373 * 2 1 3 5 5 C 1.37219 * 132.74215 * 298.60543 * 4 2 1 6 6 C 1.39919 * 119.79096 * 179.71073 * 5 4 2 7 7 C 1.47462 * 120.24351 * 180.28617 * 6 5 4 8 8 O 1.21503 * 120.00256 * 0.27769 * 7 6 5 9 9 O 1.34750 * 119.99584 * 180.26837 * 7 6 5 10 10 C 1.45205 * 116.99587 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46978 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47183 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47225 * 179.97438 * 12 11 10 14 14 H 1.08006 * 120.00225 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00280 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99503 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00049 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47228 * 89.99872 * 17 15 13 19 19 H 1.48508 * 109.46842 * 210.00115 * 17 15 13 20 20 H 1.48501 * 109.47188 * 329.99914 * 17 15 13 21 21 C 1.39824 * 119.50873 * 0.56299 * 6 5 4 22 22 C 1.37448 * 120.22174 * 359.46875 * 21 6 5 23 23 C 1.39210 * 106.28712 * 118.62359 * 4 2 1 24 24 N 1.39068 * 110.21118 * 0.02562 * 23 4 2 25 25 C 1.34338 * 112.38042 * 359.97438 * 24 23 4 26 26 O 1.21281 * 126.43029 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.47074 * 297.35693 * 1 2 3 28 28 H 1.09001 * 109.47364 * 57.35918 * 1 2 3 29 29 H 1.08998 * 109.47059 * 177.35961 * 1 2 3 30 30 H 1.08990 * 109.47478 * 182.64047 * 3 2 1 31 31 H 1.09005 * 109.46696 * 302.64568 * 3 2 1 32 32 H 1.09004 * 109.46720 * 62.63638 * 3 2 1 33 33 H 1.07995 * 120.10445 * 0.04288 * 5 4 2 34 34 H 1.08997 * 109.47017 * 299.99804 * 10 9 7 35 35 H 1.08994 * 109.47167 * 60.00373 * 10 9 7 36 36 H 1.09002 * 109.46554 * 299.99924 * 11 10 9 37 37 H 1.09000 * 109.47367 * 59.99396 * 11 10 9 38 38 H 1.09004 * 109.46828 * 299.99778 * 12 11 10 39 39 H 1.08994 * 109.47244 * 59.99567 * 12 11 10 40 40 H 0.97009 * 119.99423 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.89063 * 179.75675 * 21 6 5 42 42 H 1.08007 * 119.83281 * 180.25424 * 22 21 6 43 43 H 0.96995 * 123.81051 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0651 1.4334 0.0000 4 6 2.0601 -0.7637 1.1921 5 6 1.9348 -0.5804 2.5462 6 6 2.5485 -1.4761 3.4287 7 6 2.4151 -1.2923 4.8857 8 8 1.7662 -0.3632 5.3240 9 8 3.0127 -2.1548 5.7311 10 6 2.8381 -1.9127 7.1521 11 6 3.5837 -2.9862 7.9477 12 6 3.3993 -2.7315 9.4450 13 6 4.1331 -3.7891 10.2285 14 1 4.6763 -4.5656 9.7104 15 6 4.1110 -3.7655 11.6070 16 7 3.4500 -2.8197 12.2379 17 14 5.0201 -5.0770 12.5782 18 1 6.4100 -4.6246 12.8403 19 1 4.3233 -5.3090 13.8690 20 1 5.0495 -6.3399 11.7975 21 6 3.2940 -2.5435 2.9188 22 6 3.4136 -2.7174 1.5606 23 6 2.7964 -1.8275 0.6783 24 7 2.7760 -1.7988 -0.7119 25 6 2.0611 -0.7677 -1.1919 26 8 1.8766 -0.5013 -2.3606 27 1 -0.3633 0.4722 0.9127 28 1 -0.3634 0.5543 -0.8654 29 1 -0.3633 -1.0266 -0.0473 30 1 3.1538 1.4147 -0.0473 31 1 1.6728 1.9676 -0.8654 32 1 1.7497 1.9389 0.9127 33 1 1.3598 0.2495 2.9296 34 1 3.2375 -0.9306 7.4051 35 1 1.7771 -1.9483 7.3991 36 1 3.1847 -3.9685 7.6947 37 1 4.6447 -2.9504 7.7006 38 1 3.7980 -1.7491 9.6982 39 1 2.3383 -2.7677 9.6917 40 1 3.4342 -2.8034 13.2077 41 1 3.7735 -3.2364 3.5944 42 1 3.9876 -3.5465 1.1736 43 1 3.2264 -2.4503 -1.2719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768693907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:40 Heat of formation + Delta-G solvation = -106.824958 kcal Electronic energy + Delta-G solvation = -25103.751671 eV Core-core repulsion = 21306.366578 eV Total energy + Delta-G solvation = -3797.385092 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.32150 -40.27691 -38.71351 -36.59158 -36.01772 -35.19926 -34.00228 -31.75714 -30.89604 -30.00128 -27.86821 -27.12870 -25.53930 -24.59855 -23.01565 -22.15111 -20.99264 -20.38827 -20.08716 -18.33012 -17.92570 -16.94895 -16.81698 -16.32748 -16.18133 -16.09582 -15.39889 -14.83674 -14.65397 -14.46714 -14.32559 -14.17773 -13.64914 -13.63773 -13.22101 -13.14939 -12.78667 -12.59341 -12.39218 -12.18519 -12.16058 -11.88152 -11.84641 -11.26992 -11.17167 -10.98653 -10.72049 -10.66170 -10.54124 -10.41374 -10.39179 -9.74664 -9.53595 -9.43272 -9.18369 -8.59286 -8.40388 -6.05176 -4.08222 0.24569 0.85865 1.79457 2.40906 2.51918 2.75016 3.29731 3.36077 3.39269 3.42103 3.54382 3.74395 4.24798 4.40970 4.42198 4.50623 4.64099 4.71005 4.83269 5.06323 5.15862 5.21392 5.25417 5.27426 5.30875 5.51660 5.53507 5.55875 5.60413 5.62298 5.68923 5.71905 5.91601 5.99965 6.01335 6.21576 6.39626 6.46341 6.51556 6.80063 6.95709 7.40389 7.58436 7.69363 7.86670 7.93148 8.34009 8.98012 9.56101 11.06210 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.035849 B = 0.001996 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.861539 B =14026.080717 C =14603.236886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.051 4.051 3 C -0.128 4.128 4 C -0.150 4.150 5 C 0.003 3.997 6 C -0.141 4.141 7 C 0.507 3.493 8 O -0.510 6.510 9 O -0.353 6.353 10 C 0.069 3.931 11 C -0.109 4.109 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.022 4.022 22 C -0.151 4.151 23 C 0.175 3.825 24 N -0.658 5.658 25 C 0.537 3.463 26 O -0.493 6.493 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.262 0.738 41 H 0.152 0.848 42 H 0.137 0.863 43 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 4.024 -27.291 27.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.055 4.055 3 C -0.186 4.186 4 C -0.153 4.153 5 C -0.016 4.016 6 C -0.143 4.143 7 C 0.351 3.649 8 O -0.400 6.400 9 O -0.270 6.270 10 C -0.003 4.003 11 C -0.146 4.146 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.041 4.041 22 C -0.172 4.172 23 C 0.076 3.924 24 N -0.300 5.300 25 C 0.325 3.675 26 O -0.366 6.366 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.162 0.838 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.169 0.831 42 H 0.155 0.845 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.114 4.607 -27.626 28.181 hybrid contribution 0.747 -1.062 0.522 1.399 sum -2.367 3.545 -27.105 27.438 Atomic orbital electron populations 1.21693 0.89955 1.03133 1.03799 1.20128 0.98567 0.96833 0.89946 1.21692 1.01432 0.91648 1.03797 1.19583 1.03792 0.98142 0.93738 1.20247 0.94512 0.97090 0.89733 1.19032 1.05601 0.99699 0.90000 1.20863 0.76540 0.80025 0.87429 1.90839 1.38778 1.31321 1.79021 1.86530 1.68086 1.51897 1.20477 1.23544 1.01817 1.01330 0.73642 1.21771 0.99248 0.96309 0.97316 1.19052 0.97660 0.97598 0.87040 1.21164 1.31923 1.11700 0.91188 0.92430 1.25036 0.95551 0.95965 0.97964 1.69967 1.41867 1.33017 1.08453 0.86545 0.79762 0.81981 0.79422 1.20619 1.21203 1.19822 1.21299 0.93229 0.95136 0.94434 1.20364 1.04211 1.00678 0.91967 1.18408 0.95643 0.95515 0.82804 1.43693 1.50918 1.29718 1.05698 1.20615 0.76963 0.80161 0.89780 1.90805 1.58331 1.69459 1.17973 0.90420 0.90883 0.91942 0.91938 0.90887 0.90419 0.83798 0.91365 0.91358 0.92104 0.92101 0.96211 0.96204 0.92884 0.83051 0.84523 0.74605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 8.64 37.16 0.32 -0.53 16 2 C -0.05 -0.39 1.01 -156.24 -0.16 -0.55 16 3 C -0.13 -0.85 8.64 37.16 0.32 -0.53 16 4 C -0.15 -1.24 4.98 -104.40 -0.52 -1.76 16 5 C 0.00 0.03 9.58 -39.32 -0.38 -0.35 16 6 C -0.14 -1.55 5.88 -104.92 -0.62 -2.17 16 7 C 0.51 7.40 7.89 34.49 0.27 7.68 16 8 O -0.51 -8.72 16.15 -19.27 -0.31 -9.03 16 9 O -0.35 -5.53 9.47 -40.63 -0.38 -5.92 16 10 C 0.07 1.23 5.48 37.16 0.20 1.43 16 11 C -0.11 -2.17 5.53 -26.73 -0.15 -2.32 16 12 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 13 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 14 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.02 -0.20 9.59 -39.28 -0.38 -0.57 16 22 C -0.15 -1.06 10.05 -39.33 -0.40 -1.45 16 23 C 0.17 1.34 7.11 -83.67 -0.59 0.74 16 24 N -0.66 -4.61 5.85 -9.66 -0.06 -4.67 16 25 C 0.54 4.84 7.37 -10.84 -0.08 4.76 16 26 O -0.49 -5.85 18.03 5.56 0.10 -5.75 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.14 1.32 7.66 -52.49 -0.40 0.91 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.15 1.23 7.61 -52.49 -0.40 0.83 16 42 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 43 H 0.42 1.96 8.96 -40.82 -0.37 1.59 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -32.89 370.98 -8.25 -41.14 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -6.20 Total: -3.43 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -2.70 Total: -8.42 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.68 Total: -30.44 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.60 Total: -20.70 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.89 -8.25 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768693907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.686 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds